jgi.p|Nanoce1779_2|605545, mRNA_9803 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|605545
Unique Name	mRNA_9803
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1610
Alignment location	scaffold_32:126081..127690 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	605631
Track	FilteredModels2
ProteinId	605545

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_32	supercontig	scaffold_32:126081..127690 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|605545	gene_9803	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|605545	mRNA_9803-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_9803	CDS_9803	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_32:126081..127690+
coding sequence from alignment at scaffold_32:126081..127690+

mRNA sequence

>mRNA_9803 ID=mRNA_9803|Name=jgi.p|Nanoce1779_2|605545|organism=Nannochloropsis oceanica|type=mRNA|length=1610bp
GGGAGGGGGGGTGGGTGGGCATCAAGGCGGGTGGGCAAGGTAGTAGAAGG
AACGGATAGAGGGAGCGAGACCATCTATAGTCGTAAGTTTTTTTTTGCTC
CCGTCGCCGATTATTTGGTAGTGGAGGAAGAGGAGAACGAGATGGAGGTG
GGGTTGAGAGCGGCTTTTTTCTCCCCGTTGAAAACCGCTCTTGGGGATAC
CAGTGCCAGCACTTTCTCCTCCACCATACCCTTATCTTCGATGCCAGGCG
AGGAGGTGGAGGGTGCGAAGGATGAAGAGGCCCTCGCTGCTGTTCCGTGG
CGCCGTCGTCTCTTCCGTTTGCGCGACCTCCGACTCGAAGGCGAAACCAT
TCAAGAAGTCCGCCTTGTATGCCTCAAACGTCCCCTTTCCTCCCCTCCTC
CTCTCCCCAGTCCTCCTCGGCCTTACAGGCTTTACGTAGGCGAGATCAGC
ATAGGTCACGTACGGGCGCCGGCGAGGAAGGAAGAGCGACTGCCCTCTCT
CCGCAGGTCCCTTGCCCTCCCTCCCCTCCAGCGACCGACCAACCTTCTCC
GCCTCAACCGTCTTGCTTTTAAACGAGATATGAGTGAGGGAGGGAAGGAG
GAGGCCTGGGTGGAGGCTGGGAGCGTGGGCTTGAGAGGGGCAGGATGGGA
GGAGGGAAGTCGGACCTTAAGTGGCCAGTTGGTCTGGCATTGGCGGAGAC
CCCAGGACGTGCACAGCACAGAGGTGTTCCTTTTGTTTCTCCACCCCACC
CTTGCTAGCACCCTCTGTCCTCCTCCTTTGTGGTTGGGGAGAGTTTGGAC
ATCAGTCTTTCCAATGTGTCTGGTCCTGCCTTCTTGGGAAGGCGGGAGGG
ATGGAGGGAAGATCAGGTTGGTGCTGCAGCCGAGGGATGGGTTTGGAAAT
GTCTTGCCTTTGTGCGAATGTCCATCGCTGGAAATGGACGTGCCGTGAGG
TAGGAAAGATCCTGCGACAATCGGAGTTTTTGAGAGAGATGATGGGAGAC
GTTTAGACAAGCCAAACATCGGCCAAGCCCCGCATTATAGGTGTTTAGCT
ATTTGGTGAGTGTACATACATGAACAAATCGTAATGATGGGCGTCAGTGG
GTCCATCTTATTAACATGTAACAACAAGCTACTTGAGAGGCAAAACCAAT
TTGAATAATACGCTCTGATTTCTTGCAAACTGTATTCGATCCTCCGCCCA
ACTATGTCCAAGGTTTCCTTTCCTGTCTTCCCACCTTGTGCATACTGACC
GGGATTCTCTTCCAAGTGAAACAAGATAAATTTCGTTGGTGGCGGAGCTG
GACAAGCGCGCTAACTCGTCGGTCTGGAGGGGATATTCCAAAAATGTATC
CACTATACTCTGGCTGCAATGCGGTAAAATATTGTCACAAGCCGTGAACA
GCATGTTCGCAGCTTCCTGGGCGCCCAGCCGTTCAAAGTCATGCAAACAC
GAAGTGTGTAGTCTGTATGTAGCACAAGAACACAAGCAAACCGTACCTAC
TAGGTCCTCGAGTCCCCTCGGTTTCTTTGAACATGTCATTTAACTGAGAC
GCCATTTGGTTGCTCGCTTTTCGATAACGCAGTATGTCTTTTTTCTTTGT
TGCCTTATCG

protein sequence of jgi.p|Nanoce1779_2|605545

>mRNA_9803-protein ID=mRNA_9803-protein|Name=jgi.p|Nanoce1779_2|605545|organism=Nannochloropsis oceanica|type=polypeptide|length=269bp
MEVGLRAAFFSPLKTALGDTSASTFSSTIPLSSMPGEEVEGAKDEEALAA
VPWRRRLFRLRDLRLEGETIQEVRLVCLKRPLSSPPPLPSPPRPYRLYVG
EISIGHVRAPARKEERLPSLRRSLALPPLQRPTNLLRLNRLAFKRDMSEG
GKEEAWVEAGSVGLRGAGWEEGSRTLSGQLVWHWRRPQDVHSTEVFLLFL
HPTLASTLCPPPLWLGRVWTSVFPMCLVLPSWEGGRDGGKIRLVLQPRDG
FGNVLPLCECPSLEMDVP*

mRNA from alignment at scaffold_32:126081..127690+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9803 ID=mRNA_9803|Name=jgi.p|Nanoce1779_2|605545|organism=Nannochloropsis oceanica|type=mRNA|length=1610bp|location=Sequence derived from alignment at scaffold_32:126081..127690+ (Nannochloropsis oceanica)
GGGAGGGGGGGTGGGTGGGCATCAAGGCGGGTGGGCAAGGTAGTAGAAGG
AACGGATAGAGGGAGCGAGACCATCTATAGTCGTAAGTTTTTTTTTGCTC
CCGTCGCCGATTATTTGGTAGTGGAGGAAGAGGAGAACGAGATGGAGGTG
GGGTTGAGAGCGGCTTTTTTCTCCCCGTTGAAAACCGCTCTTGGGGATAC
CAGTGCCAGCACTTTCTCCTCCACCATACCCTTATCTTCGATGCCAGGCG
AGGAGGTGGAGGGTGCGAAGGATGAAGAGGCCCTCGCTGCTGTTCCGTGG
CGCCGTCGTCTCTTCCGTTTGCGCGACCTCCGACTCGAAGGCGAAACCAT
TCAAGAAGTCCGCCTTGTATGCCTCAAACGTCCCCTTTCCTCCCCTCCTC
CTCTCCCCAGTCCTCCTCGGCCTTACAGGCTTTACGTAGGCGAGATCAGC
ATAGGTCACGTACGGGCGCCGGCGAGGAAGGAAGAGCGACTGCCCTCTCT
CCGCAGGTCCCTTGCCCTCCCTCCCCTCCAGCGACCGACCAACCTTCTCC
GCCTCAACCGTCTTGCTTTTAAACGAGATATGAGTGAGGGAGGGAAGGAG
GAGGCCTGGGTGGAGGCTGGGAGCGTGGGCTTGAGAGGGGCAGGATGGGA
GGAGGGAAGTCGGACCTTAAGTGGCCAGTTGGTCTGGCATTGGCGGAGAC
CCCAGGACGTGCACAGCACAGAGGTGTTCCTTTTGTTTCTCCACCCCACC
CTTGCTAGCACCCTCTGTCCTCCTCCTTTGTGGTTGGGGAGAGTTTGGAC
ATCAGTCTTTCCAATGTGTCTGGTCCTGCCTTCTTGGGAAGGCGGGAGGG
ATGGAGGGAAGATCAGGTTGGTGCTGCAGCCGAGGGATGGGTTTGGAAAT
GTCTTGCCTTTGTGCGAATGTCCATCGCTGGAAATGGACGTGCCGTGAGG
TAGGAAAGATCCTGCGACAATCGGAGTTTTTGAGAGAGATGATGGGAGAC
GTTTAGACAAGCCAAACATCGGCCAAGCCCCGCATTATAGGTGTTTAGCT
ATTTGGTGAGTGTACATACATGAACAAATCGTAATGATGGGCGTCAGTGG
GTCCATCTTATTAACATGTAACAACAAGCTACTTGAGAGGCAAAACCAAT
TTGAATAATACGCTCTGATTTCTTGCAAACTGTATTCGATCCTCCGCCCA
ACTATGTCCAAGGTTTCCTTTCCTGTCTTCCCACCTTGTGCATACTGACC
GGGATTCTCTTCCAAGTGAAACAAGATAAATTTCGTTGGTGGCGGAGCTG
GACAAGCGCGCTAACTCGTCGGTCTGGAGGGGATATTCCAAAAATGTATC
CACTATACTCTGGCTGCAATGCGGTAAAATATTGTCACAAGCCGTGAACA
GCATGTTCGCAGCTTCCTGGGCGCCCAGCCGTTCAAAGTCATGCAAACAC
GAAGTGTGTAGTCTGTATGTAGCACAAGAACACAAGCAAACCGTACCTAC
TAGGTCCTCGAGTCCCCTCGGTTTCTTTGAACATGTCATTTAACTGAGAC
GCCATTTGGTTGCTCGCTTTTCGATAACGCAGTATGTCTTTTTTCTTTGT
TGCCTTATCG

Coding sequence (CDS) from alignment at scaffold_32:126081..127690+

>mRNA_9803 ID=mRNA_9803|Name=jgi.p|Nanoce1779_2|605545|organism=Nannochloropsis oceanica|type=CDS|length=807bp|location=Sequence derived from alignment at scaffold_32:126081..127690+ (Nannochloropsis oceanica)
ATGGAGGTGGGGTTGAGAGCGGCTTTTTTCTCCCCGTTGAAAACCGCTCT
TGGGGATACCAGTGCCAGCACTTTCTCCTCCACCATACCCTTATCTTCGA
TGCCAGGCGAGGAGGTGGAGGGTGCGAAGGATGAAGAGGCCCTCGCTGCT
GTTCCGTGGCGCCGTCGTCTCTTCCGTTTGCGCGACCTCCGACTCGAAGG
CGAAACCATTCAAGAAGTCCGCCTTGTATGCCTCAAACGTCCCCTTTCCT
CCCCTCCTCCTCTCCCCAGTCCTCCTCGGCCTTACAGGCTTTACGTAGGC
GAGATCAGCATAGGTCACGTACGGGCGCCGGCGAGGAAGGAAGAGCGACT
GCCCTCTCTCCGCAGGTCCCTTGCCCTCCCTCCCCTCCAGCGACCGACCA
ACCTTCTCCGCCTCAACCGTCTTGCTTTTAAACGAGATATGAGTGAGGGA
GGGAAGGAGGAGGCCTGGGTGGAGGCTGGGAGCGTGGGCTTGAGAGGGGC
AGGATGGGAGGAGGGAAGTCGGACCTTAAGTGGCCAGTTGGTCTGGCATT
GGCGGAGACCCCAGGACGTGCACAGCACAGAGGTGTTCCTTTTGTTTCTC
CACCCCACCCTTGCTAGCACCCTCTGTCCTCCTCCTTTGTGGTTGGGGAG
AGTTTGGACATCAGTCTTTCCAATGTGTCTGGTCCTGCCTTCTTGGGAAG
GCGGGAGGGATGGAGGGAAGATCAGGTTGGTGCTGCAGCCGAGGGATGGG
TTTGGAAATGTCTTGCCTTTGTGCGAATGTCCATCGCTGGAAATGGACGT
GCCGTGA

Synonyms

Publications