jgi.p|Nanoce1779_2|533188, mRNA_9802 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|533188
Unique Name	mRNA_9802
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	825
Alignment location	scaffold_32:123801..125057 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	533274
Track	FilteredModels2
ProteinId	533188

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_32	supercontig	scaffold_32:123801..125057 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|533188	gene_9802	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|533188	mRNA_9802-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_9802	CDS_9802	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_32:123801..125057+
coding sequence from alignment at scaffold_32:123801..125057+

mRNA sequence

>mRNA_9802 ID=mRNA_9802|Name=jgi.p|Nanoce1779_2|533188|organism=Nannochloropsis oceanica|type=mRNA|length=825bp
ATGGACAAAGAAGAGGAAGGAGGAAAGGGCTTTGAAAGGAAAGAGGAGGG
AGGGGACGAGGGCGGTGCCAAAGGCCTGGAGAACGAGGCGGCTCTGGCCA
CCGCTGCCCTTACTCCTCCATCCCTCGCGCCCTCCTTCGCACCCGCTTTT
CGGCTCTACGCCTTTGACCTTTGCGAAACTTTCGTCTATTTCTCGCACCA
CCTGGTCTCCTTCCCCCCCTCCTCCTGGATCTCGCTCTGCCATCGACAAG
GCGTCTGCTGTCTAGGCACTTTCATCACCGAGTGGGCGGGTGGGAAGGAG
GCATGCCGTCGGCTGTTTGCCTCCCCCTCCCTAGCACACTCCCTGGCCCG
GCAGCTGGTGGACATGGCCAGCCATTATGGTTTCGATGGATGGCTTGTGA
ACATTGAGAACGACTTGGAGGTTGGGAAAGAGGCAGGGGTGGAAAATGTG
CTGGTATTTTTGGAGGCGCTCACGGAGGGGATGAAGGCAGAAGGGGAGGG
AGGGAGGGAGGGAGGGATTGTGTTATGGTATGACTCAGTGGTGAGTGATA
CAGGCAAATTGGAATGGCAGAATGGATTGACAAGACGCAACGAGAGGTTT
TTTAATGCTTGCGATGGAATATTCACCAATTACTGCTGGAAGGAAGAGGA
GCCGGCGTTGAGTGCTGCCTTGGCCGATGCCCGGCGGAGGGACGTGTGGA
TGGGGGTGGATTGCTTCGGGCGTGGCACGTATGGAGGGGGAGGCTTTGAC
TGTGACGTGGCCCTCAAGGTGGCCCGTAAGGCGGGCGTGTCTGCCGCGCT
TTTTGCCCCGGGCTGGGTTTTGGAA

protein sequence of jgi.p|Nanoce1779_2|533188

>mRNA_9802-protein ID=mRNA_9802-protein|Name=jgi.p|Nanoce1779_2|533188|organism=Nannochloropsis oceanica|type=polypeptide|length=275bp
MDKEEEGGKGFERKEEGGDEGGAKGLENEAALATAALTPPSLAPSFAPAF
RLYAFDLCETFVYFSHHLVSFPPSSWISLCHRQGVCCLGTFITEWAGGKE
ACRRLFASPSLAHSLARQLVDMASHYGFDGWLVNIENDLEVGKEAGVENV
LVFLEALTEGMKAEGEGGREGGIVLWYDSVVSDTGKLEWQNGLTRRNERF
FNACDGIFTNYCWKEEEPALSAALADARRRDVWMGVDCFGRGTYGGGGFD
CDVALKVARKAGVSAALFAPGWVLE

mRNA from alignment at scaffold_32:123801..125057+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9802 ID=mRNA_9802|Name=jgi.p|Nanoce1779_2|533188|organism=Nannochloropsis oceanica|type=mRNA|length=1257bp|location=Sequence derived from alignment at scaffold_32:123801..125057+ (Nannochloropsis oceanica)
ATGGACAAAGAAGAGGAAGGAGGAAAGGGCTTTGAAAGGAAAGAGGAGGG
AGGGGACGAGGGCGGTGCCAAAGGCCTGGAGAACGAGGCGGCTCTGGCCA
CCGCTGCCCTTACTCCTCCATCCCTCGCGCCCTCCTTCGCACCCGCTTTT
CGGCTCTACGCCTTTGACCTTTGCGAAACTTTCGTCTATTTCTCGCACCA
CCTGGTCTCCTTCCCCCCCTCCTCCTGGATCTCGCTCTGCCATCGACAAG
GCGTCTGCTGTCTAGGCACTTTCATCACCGAGTGGGCGGGTGGGAAGGAG
GCATGCCGTCGGCTGTTTGCCTCCCCCTCCCTAGCACACTCCCTGGCCCG
GCAGCTGGTGGACATGGCCAGCCATTATGGTTTCGATGGATGGCTTGTGA
ACATTGAGAACGACTTGGAGGTTGGGAAAGAGGCAGGGGTGGAAAATGTG
CTGGTATTTTTGGAGGCGCTCACGGAGGGGATGAAGGCAGAAGGGGAGGG
AGGGAGGGAGGGAGGGATTGTGTTATGGTATGACTCAGTGGTGAGTGATA
CAGGCAAATTGGAATGGCAGAATGGATTGACAAGACGCAACGAGAGGTTT
TTTAATGCTTGCGATGGAATATTCACCAATTACTGCTGGAAGGAAGAGGA
GCCGGCGTTGAGTGCTGCCTTGGCCGATGCGTTTCTCCTCCCGCCTTCCC
CCCCCTCCCCTTCCTCTTCCTTCTTATCGCCGTCAACAACGGCGAAAATT
TCGGCACAGACTCTCCCACCTTCCCCCAACCCTTCAGCCTCCTCCTCTTC
TTCCTCCAACTTCTTTTCTTCATCCCCCTGCTCATCTTCTCCCTCCTCTT
CCGCTAAGCCGCGCTTGGGTAAGGCTGTGGCAGAGATGCCTTCCTGTGTT
TCGCCTGAAGGAAGGGTAAAAAGAGGATGGAAGGAGGGCTTGAAGGAGGA
AGAGGAGGAGGAGGAAAGCAGTAGAGGACAAGGACAAGAAGGGAGAACAG
GAGCAATGACCACAGCTGCAGCGATAGCAGCAGTAGCAGCAACAGCAACA
ACAGCAGCCCGAGGATCAACAGCAACAAGAAAAAAGGAGGCAGGGAGGCT
GGGAGTCAGGAGCCGGCGGAGGGACGTGTGGATGGGGGTGGATTGCTTCG
GGCGTGGCACGTATGGAGGGGGAGGCTTTGACTGTGACGTGGCCCTCAAG
GTGGCCCGTAAGGCGGGCGTGTCTGCCGCGCTTTTTGCCCCGGGCTGGGT
TTTGGAA

Coding sequence (CDS) from alignment at scaffold_32:123801..125057+

>mRNA_9802 ID=mRNA_9802|Name=jgi.p|Nanoce1779_2|533188|organism=Nannochloropsis oceanica|type=CDS|length=1650bp|location=Sequence derived from alignment at scaffold_32:123801..125057+ (Nannochloropsis oceanica)
ATGGACAAAGAAGAGGAAGGAGGAAAGGGCTTTGAAAGGAAAGAGGAGGG
AGGGGACGAGGGCGGTGCCAAAGGCCTGGAGAACGAGGCGGCTCTGGCCA
CCGCTGCCCTTACTCCTCCATCCCTCGCGCCCTCCTTCGCACCCGCTTTT
CGGCTCTACGCCTTTGACCTTTGCGAAACTTTCGTCTATTTCTCGCACCA
CCTGGTCTCCTTCCCCCCCTCCTCCTGGATCTCGCTCTGCCATCGACAAG
GCGTCTGCTGTCTAGGCACTTTCATCACCGAGTGGGCGGGTGGGAAGGAG
GCATGCCGTCGGCTGTTTGCCTCCCCCTCCCTAGCACACTCCCTGGCCCG
GCAGCTGGTGGACATGGCCAGCCATTATGGTTTCGATGGATGGCTTGTGA
ACATTGAGAACGACTTGGAGGTTGGGAAAGAGGCAGGGGTGGAAAATGTG
CTGGTATTTTTGGAGGCGCTCACGGAGGGGATGAAGGCAGAAGGGGAGGG
AGGGAGGGAGGGAGGGATTGTGTTATGGTATGACTCAGTGGTGAGTGATA
CAGGCAAATTGGAATGGCAGAATGGATTGACAAGACGCAACGAGAGGTTT
TTTAATGCTTGCGATGGAATATTCACCAATTACTGCTGGAAGGAAGAGGA
GCCGGCGTTGAGTGCTGCCTTGGCCGATGCCCGGCGGAGGGACGTGTGGA
TGGGGGTGGATTGCTTCGGGCGTGGCACGTATGGAGGGGGAGGCTTTGAC
TGTGACGTGGCCCTCAAGGTGGCCCGTAAGGCGGGCGTGTCTGCCGCGCT
TTTTGCCCCGGGCTGGGTTTTGGAAATGGACAAAGAAGAGGAAGGAGGAA
AGGGCTTTGAAAGGAAAGAGGAGGGAGGGGACGAGGGCGGTGCCAAAGGC
CTGGAGAACGAGGCGGCTCTGGCCACCGCTGCCCTTACTCCTCCATCCCT
CGCGCCCTCCTTCGCACCCGCTTTTCGGCTCTACGCCTTTGACCTTTGCG
AAACTTTCGTCTATTTCTCGCACCACCTGGTCTCCTTCCCCCCCTCCTCC
TGGATCTCGCTCTGCCATCGACAAGGCGTCTGCTGTCTAGGCACTTTCAT
CACCGAGTGGGCGGGTGGGAAGGAGGCATGCCGTCGGCTGTTTGCCTCCC
CCTCCCTAGCACACTCCCTGGCCCGGCAGCTGGTGGACATGGCCAGCCAT
TATGGTTTCGATGGATGGCTTGTGAACATTGAGAACGACTTGGAGGTTGG
GAAAGAGGCAGGGGTGGAAAATGTGCTGGTATTTTTGGAGGCGCTCACGG
AGGGGATGAAGGCAGAAGGGGAGGGAGGGAGGGAGGGAGGGATTGTGTTA
TGGTATGACTCAGTGGTGAGTGATACAGGCAAATTGGAATGGCAGAATGG
ATTGACAAGACGCAACGAGAGGTTTTTTAATGCTTGCGATGGAATATTCA
CCAATTACTGCTGGAAGGAAGAGGAGCCGGCGTTGAGTGCTGCCTTGGCC
GATGCCCGGCGGAGGGACGTGTGGATGGGGGTGGATTGCTTCGGGCGTGG
CACGTATGGAGGGGGAGGCTTTGACTGTGACGTGGCCCTCAAGGTGGCCC
GTAAGGCGGGCGTGTCTGCCGCGCTTTTTGCCCCGGGCTGGGTTTTGGAA

Synonyms

Publications