jgi.p|Nanoce1779_2|574880, mRNA_980 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|574880
Unique NamemRNA_980
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length689
Alignment locationscaffold_2:914713..915401 +

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Properties
Property NameValue
TranscriptId574966
TrackFilteredModels2
ProteinId574880
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:914713..915401 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|574880gene_980Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|574880mRNA_980-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_980CDS_980Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_980 ID=mRNA_980|Name=jgi.p|Nanoce1779_2|574880|organism=Nannochloropsis oceanica|type=mRNA|length=689bp
ACAGGAAATGGTTGATTACAGCCGCTTTGACAAAATTGGCATGGACGACG
ACGAGGACAAGGAGGATACACCATGCCAGCAGCAGTCCAAAGGGTCCACC
TCCTCATCCCAGCCTCCCCACCCCCTTCCTCCTGCCTCTGCCTCCACTAA
CACCACCACCACGAGCAGCACTTTTATCACACCCAAGGGCAAAGAAGGGC
ACCGGCTCAAGTTCGAGCACGGGGGCCAGACTGTCTATGAATGGGAGCAA
ACGCTGGAAGACGTCAGCCTTTACATCACTCCGCCACCGTTGGTGAAGGC
CAGCATGCTGTACTGCACTATCACACCCTCCCATCTCACCTTAGGCTTGA
AAGGGGCACCCCATCCTTTCATTGACGAGACAACTGCTGGGTCTGTCAAG
GCGACTGAAAGCTTTTGGACCTTGGAAGATGGGGAGCTGCATATCTTGCT
ACAGAAAGCGAGCAAGGGGGAAGTCTGGCCCAGCGCCTTGGCCGGGCGGG
GCGCGTTGGACCCCTTGACGAGCGAAACCGTGAGGAAGCAGCTCATGCTG
GAGAGATTTCAGGAGGAGAACCCCGGGTTTGATTTTTCGAATGCCAATTT
CAATGGAGCAGTGCCGGACCCGCAGACGTTTTTGGGTGGCGTAAAGTACA
CGTAGAGACTTGAGCATGTGACTGAAAGAACATGTACAG
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protein sequence of jgi.p|Nanoce1779_2|574880

>mRNA_980-protein ID=mRNA_980-protein|Name=jgi.p|Nanoce1779_2|574880|organism=Nannochloropsis oceanica|type=polypeptide|length=216bp
MVDYSRFDKIGMDDDEDKEDTPCQQQSKGSTSSSQPPHPLPPASASTNTT
TTSSTFITPKGKEGHRLKFEHGGQTVYEWEQTLEDVSLYITPPPLVKASM
LYCTITPSHLTLGLKGAPHPFIDETTAGSVKATESFWTLEDGELHILLQK
ASKGEVWPSALAGRGALDPLTSETVRKQLMLERFQEENPGFDFSNANFNG
AVPDPQTFLGGVKYT*
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mRNA from alignment at scaffold_2:914713..915401+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_980 ID=mRNA_980|Name=jgi.p|Nanoce1779_2|574880|organism=Nannochloropsis oceanica|type=mRNA|length=689bp|location=Sequence derived from alignment at scaffold_2:914713..915401+ (Nannochloropsis oceanica)
ACAGGAAATGGTTGATTACAGCCGCTTTGACAAAATTGGCATGGACGACG
ACGAGGACAAGGAGGATACACCATGCCAGCAGCAGTCCAAAGGGTCCACC
TCCTCATCCCAGCCTCCCCACCCCCTTCCTCCTGCCTCTGCCTCCACTAA
CACCACCACCACGAGCAGCACTTTTATCACACCCAAGGGCAAAGAAGGGC
ACCGGCTCAAGTTCGAGCACGGGGGCCAGACTGTCTATGAATGGGAGCAA
ACGCTGGAAGACGTCAGCCTTTACATCACTCCGCCACCGTTGGTGAAGGC
CAGCATGCTGTACTGCACTATCACACCCTCCCATCTCACCTTAGGCTTGA
AAGGGGCACCCCATCCTTTCATTGACGAGACAACTGCTGGGTCTGTCAAG
GCGACTGAAAGCTTTTGGACCTTGGAAGATGGGGAGCTGCATATCTTGCT
ACAGAAAGCGAGCAAGGGGGAAGTCTGGCCCAGCGCCTTGGCCGGGCGGG
GCGCGTTGGACCCCTTGACGAGCGAAACCGTGAGGAAGCAGCTCATGCTG
GAGAGATTTCAGGAGGAGAACCCCGGGTTTGATTTTTCGAATGCCAATTT
CAATGGAGCAGTGCCGGACCCGCAGACGTTTTTGGGTGGCGTAAAGTACA
CGTAGAGACTTGAGCATGTGACTGAAAGAACATGTACAG
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Coding sequence (CDS) from alignment at scaffold_2:914713..915401+

>mRNA_980 ID=mRNA_980|Name=jgi.p|Nanoce1779_2|574880|organism=Nannochloropsis oceanica|type=CDS|length=648bp|location=Sequence derived from alignment at scaffold_2:914713..915401+ (Nannochloropsis oceanica)
ATGGTTGATTACAGCCGCTTTGACAAAATTGGCATGGACGACGACGAGGA
CAAGGAGGATACACCATGCCAGCAGCAGTCCAAAGGGTCCACCTCCTCAT
CCCAGCCTCCCCACCCCCTTCCTCCTGCCTCTGCCTCCACTAACACCACC
ACCACGAGCAGCACTTTTATCACACCCAAGGGCAAAGAAGGGCACCGGCT
CAAGTTCGAGCACGGGGGCCAGACTGTCTATGAATGGGAGCAAACGCTGG
AAGACGTCAGCCTTTACATCACTCCGCCACCGTTGGTGAAGGCCAGCATG
CTGTACTGCACTATCACACCCTCCCATCTCACCTTAGGCTTGAAAGGGGC
ACCCCATCCTTTCATTGACGAGACAACTGCTGGGTCTGTCAAGGCGACTG
AAAGCTTTTGGACCTTGGAAGATGGGGAGCTGCATATCTTGCTACAGAAA
GCGAGCAAGGGGGAAGTCTGGCCCAGCGCCTTGGCCGGGCGGGGCGCGTT
GGACCCCTTGACGAGCGAAACCGTGAGGAAGCAGCTCATGCTGGAGAGAT
TTCAGGAGGAGAACCCCGGGTTTGATTTTTCGAATGCCAATTTCAATGGA
GCAGTGCCGGACCCGCAGACGTTTTTGGGTGGCGTAAAGTACACGTAG
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Synonyms
Publications