jgi.p|Nanoce1779_2|627624, mRNA_98 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|627624
Unique NamemRNA_98
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1106
Alignment locationscaffold_3:268625..269730 +

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Properties
Property NameValue
TranscriptId627710
TrackFilteredModels2
ProteinId627624
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:268625..269730 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|627624gene_98Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|627624mRNA_98-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_98CDS_98Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_98 ID=mRNA_98|Name=jgi.p|Nanoce1779_2|627624|organism=Nannochloropsis oceanica|type=mRNA|length=1106bp
AGATTCGGTGCAAGGCAAAACGATGTTTAACCCGCCATACAATCCCCACG
TACACACGATGGGCAGGCAAGCAGGCCGCCAAGCTGCCGTCAGGAAGTAC
AAATGACAAAGAGTCTGACCTCCCCACTCCGTGTCCCAACCCATAATACC
AGATCCATTTAGCCATGACGACCACCAGCACTACCGCCATCGCACCACCA
ACACTTGCACTCGACAATGGCAACAAGGAGCTCCAACTCACGGATGACCC
CGAGGTGTGGGAGGACTATCGCAGGCGCTTCGAGACGGAGGGATACCTCG
TCTTGGAAGGATACTGGTCCCGGGCAACGTGCGCAGCACTCCGTGGCCGA
ATGAACGCCTTGATTCAAGAGTTTGACCTGGCCGCACACCGCTCCGTCTT
CTCCACGGACGAGCAAAGCCGCACTTCCGACGATTACTTCCTCGGGAGTG
GCGACAAGATTCGTTTCTTCTGGGAGGCAGATGCCTTTGACAAGGAGACG
GGTGCATTCCGACAACCCCGGGCCGCCAGCATCAATAAAGTTGGACATGC
ATTGCATGATCTCGACCCCATTTTCCAGCAAATAACCTACACTCCTCAAA
TCGGCAAGTTGGCTCGAGCTGTGGGGGGCCTGAGCGTCCCCTTGGTCGCC
CAAAGCATGTATATTTTCAAGCAGCCGAGGATAGGGGGGAAGGTGGGGGC
GCACCAAGACGGCACCTTTTTGTACACGGAGCCTCAGTCCGTGGTGGGGT
TTTGGTGGGCCTTGGAAGACTGCACGATGACAAATGGATGCTTGTGGGCA
GTGCCGGGATCACATAAAGGAGGGGTTACGAGGCGGTTTCGTCGGCGAGG
GGAGGAGGGAGGAACGGAATTTGTGCCGGCTGCGGCGGGTGGGTGGGATT
TAGAGGGAGGGTTGCCGTTGGAGGTAAAGGCGGGGAGTTTGGTATTGTTG
CATCATGCGTTGGTTCACTATAGTCTCGAGAATTTGTCGGCGGCCTCACG
GCATGCATTTAGTGTACATGTGGTGGAGGGGGGGGAAGGGACTTCCTACC
CGGAGGATAACTGGCTGCAACGTGCCCCCGAAATGCCTTTTCAAATGTTG
CCTTGA
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protein sequence of jgi.p|Nanoce1779_2|627624

>mRNA_98-protein ID=mRNA_98-protein|Name=jgi.p|Nanoce1779_2|627624|organism=Nannochloropsis oceanica|type=polypeptide|length=314bp
MTTTSTTAIAPPTLALDNGNKELQLTDDPEVWEDYRRRFETEGYLVLEGY
WSRATCAALRGRMNALIQEFDLAAHRSVFSTDEQSRTSDDYFLGSGDKIR
FFWEADAFDKETGAFRQPRAASINKVGHALHDLDPIFQQITYTPQIGKLA
RAVGGLSVPLVAQSMYIFKQPRIGGKVGAHQDGTFLYTEPQSVVGFWWAL
EDCTMTNGCLWAVPGSHKGGVTRRFRRRGEEGGTEFVPAAAGGWDLEGGL
PLEVKAGSLVLLHHALVHYSLENLSAASRHAFSVHVVEGGEGTSYPEDNW
LQRAPEMPFQMLP*
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mRNA from alignment at scaffold_3:268625..269730+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_98 ID=mRNA_98|Name=jgi.p|Nanoce1779_2|627624|organism=Nannochloropsis oceanica|type=mRNA|length=1106bp|location=Sequence derived from alignment at scaffold_3:268625..269730+ (Nannochloropsis oceanica)
AGATTCGGTGCAAGGCAAAACGATGTTTAACCCGCCATACAATCCCCACG
TACACACGATGGGCAGGCAAGCAGGCCGCCAAGCTGCCGTCAGGAAGTAC
AAATGACAAAGAGTCTGACCTCCCCACTCCGTGTCCCAACCCATAATACC
AGATCCATTTAGCCATGACGACCACCAGCACTACCGCCATCGCACCACCA
ACACTTGCACTCGACAATGGCAACAAGGAGCTCCAACTCACGGATGACCC
CGAGGTGTGGGAGGACTATCGCAGGCGCTTCGAGACGGAGGGATACCTCG
TCTTGGAAGGATACTGGTCCCGGGCAACGTGCGCAGCACTCCGTGGCCGA
ATGAACGCCTTGATTCAAGAGTTTGACCTGGCCGCACACCGCTCCGTCTT
CTCCACGGACGAGCAAAGCCGCACTTCCGACGATTACTTCCTCGGGAGTG
GCGACAAGATTCGTTTCTTCTGGGAGGCAGATGCCTTTGACAAGGAGACG
GGTGCATTCCGACAACCCCGGGCCGCCAGCATCAATAAAGTTGGACATGC
ATTGCATGATCTCGACCCCATTTTCCAGCAAATAACCTACACTCCTCAAA
TCGGCAAGTTGGCTCGAGCTGTGGGGGGCCTGAGCGTCCCCTTGGTCGCC
CAAAGCATGTATATTTTCAAGCAGCCGAGGATAGGGGGGAAGGTGGGGGC
GCACCAAGACGGCACCTTTTTGTACACGGAGCCTCAGTCCGTGGTGGGGT
TTTGGTGGGCCTTGGAAGACTGCACGATGACAAATGGATGCTTGTGGGCA
GTGCCGGGATCACATAAAGGAGGGGTTACGAGGCGGTTTCGTCGGCGAGG
GGAGGAGGGAGGAACGGAATTTGTGCCGGCTGCGGCGGGTGGGTGGGATT
TAGAGGGAGGGTTGCCGTTGGAGGTAAAGGCGGGGAGTTTGGTATTGTTG
CATCATGCGTTGGTTCACTATAGTCTCGAGAATTTGTCGGCGGCCTCACG
GCATGCATTTAGTGTACATGTGGTGGAGGGGGGGGAAGGGACTTCCTACC
CGGAGGATAACTGGCTGCAACGTGCCCCCGAAATGCCTTTTCAAATGTTG
CCTTGA
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Coding sequence (CDS) from alignment at scaffold_3:268625..269730+

>mRNA_98 ID=mRNA_98|Name=jgi.p|Nanoce1779_2|627624|organism=Nannochloropsis oceanica|type=CDS|length=942bp|location=Sequence derived from alignment at scaffold_3:268625..269730+ (Nannochloropsis oceanica)
ATGACGACCACCAGCACTACCGCCATCGCACCACCAACACTTGCACTCGA
CAATGGCAACAAGGAGCTCCAACTCACGGATGACCCCGAGGTGTGGGAGG
ACTATCGCAGGCGCTTCGAGACGGAGGGATACCTCGTCTTGGAAGGATAC
TGGTCCCGGGCAACGTGCGCAGCACTCCGTGGCCGAATGAACGCCTTGAT
TCAAGAGTTTGACCTGGCCGCACACCGCTCCGTCTTCTCCACGGACGAGC
AAAGCCGCACTTCCGACGATTACTTCCTCGGGAGTGGCGACAAGATTCGT
TTCTTCTGGGAGGCAGATGCCTTTGACAAGGAGACGGGTGCATTCCGACA
ACCCCGGGCCGCCAGCATCAATAAAGTTGGACATGCATTGCATGATCTCG
ACCCCATTTTCCAGCAAATAACCTACACTCCTCAAATCGGCAAGTTGGCT
CGAGCTGTGGGGGGCCTGAGCGTCCCCTTGGTCGCCCAAAGCATGTATAT
TTTCAAGCAGCCGAGGATAGGGGGGAAGGTGGGGGCGCACCAAGACGGCA
CCTTTTTGTACACGGAGCCTCAGTCCGTGGTGGGGTTTTGGTGGGCCTTG
GAAGACTGCACGATGACAAATGGATGCTTGTGGGCAGTGCCGGGATCACA
TAAAGGAGGGGTTACGAGGCGGTTTCGTCGGCGAGGGGAGGAGGGAGGAA
CGGAATTTGTGCCGGCTGCGGCGGGTGGGTGGGATTTAGAGGGAGGGTTG
CCGTTGGAGGTAAAGGCGGGGAGTTTGGTATTGTTGCATCATGCGTTGGT
TCACTATAGTCTCGAGAATTTGTCGGCGGCCTCACGGCATGCATTTAGTG
TACATGTGGTGGAGGGGGGGGAAGGGACTTCCTACCCGGAGGATAACTGG
CTGCAACGTGCCCCCGAAATGCCTTTTCAAATGTTGCCTTGA
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Synonyms
Publications