jgi.p|Nanoce1779_2|658648, mRNA_9799 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|658648
Unique NamemRNA_9799
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length498
Alignment locationscaffold_32:108620..109117 -

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Properties
Property NameValue
TranscriptId658734
TrackFilteredModels2
ProteinId658648
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_32supercontigscaffold_32:108620..109117 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|658648gene_9799Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|658648mRNA_9799-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9799CDS_9799Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9799 ID=mRNA_9799|Name=jgi.p|Nanoce1779_2|658648|organism=Nannochloropsis oceanica|type=mRNA|length=498bp
ATGTTGAATCGTGCGATTGTGGAAGGGGTGGGACATTCAGAGGCAAAGGA
AGATACGTCAAACGAGGGTAGGAGAAAACTAGTGATTGAGGTGCGGAAGA
TGATCACACATATCTTTAAGTCTGCTCCGATGAAAGCTGTGTTTGACGAG
TCGCAGACCAAATTGTTCGGCAACTCGCTCAAGCTCATTGATATGGCCAT
GCAGCGGTGGTCATCTGCTAAGCGAACGCTCTATCGCGTGTTTGCAGATT
GGAGAGCAATTCTGAGGACATATCGTAAGCGGAGCAAGTGGGTGTACCTC
AGAAAAAAGAGGCAGGAATTGGTGGAGCTATAGCCTGCTCCATTGTGTCA
ATCTTCTTTTGAAGGACTTGCAGGACTCCCCTGTCACATCCAGGCCCCTC
CTCGTCATGCGTGTCGTCCTTTTCCTACAAAACGAGCTTGCCTTAGACAA
GGCTGTAACTGTGATTGATCCCATCGTCGTGGAGAGAAAGGATGAGGC
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protein sequence of jgi.p|Nanoce1779_2|658648

>mRNA_9799-protein ID=mRNA_9799-protein|Name=jgi.p|Nanoce1779_2|658648|organism=Nannochloropsis oceanica|type=polypeptide|length=111bp
MLNRAIVEGVGHSEAKEDTSNEGRRKLVIEVRKMITHIFKSAPMKAVFDE
SQTKLFGNSLKLIDMAMQRWSSAKRTLYRVFADWRAILRTYRKRSKWVYL
RKKRQELVEL*
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mRNA from alignment at scaffold_32:108620..109117-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9799 ID=mRNA_9799|Name=jgi.p|Nanoce1779_2|658648|organism=Nannochloropsis oceanica|type=mRNA|length=498bp|location=Sequence derived from alignment at scaffold_32:108620..109117- (Nannochloropsis oceanica)
ATGTTGAATCGTGCGATTGTGGAAGGGGTGGGACATTCAGAGGCAAAGGA
AGATACGTCAAACGAGGGTAGGAGAAAACTAGTGATTGAGGTGCGGAAGA
TGATCACACATATCTTTAAGTCTGCTCCGATGAAAGCTGTGTTTGACGAG
TCGCAGACCAAATTGTTCGGCAACTCGCTCAAGCTCATTGATATGGCCAT
GCAGCGGTGGTCATCTGCTAAGCGAACGCTCTATCGCGTGTTTGCAGATT
GGAGAGCAATTCTGAGGACATATCGTAAGCGGAGCAAGTGGGTGTACCTC
AGAAAAAAGAGGCAGGAATTGGTGGAGCTATAGCCTGCTCCATTGTGTCA
ATCTTCTTTTGAAGGACTTGCAGGACTCCCCTGTCACATCCAGGCCCCTC
CTCGTCATGCGTGTCGTCCTTTTCCTACAAAACGAGCTTGCCTTAGACAA
GGCTGTAACTGTGATTGATCCCATCGTCGTGGAGAGAAAGGATGAGGC
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Coding sequence (CDS) from alignment at scaffold_32:108620..109117-

>mRNA_9799 ID=mRNA_9799|Name=jgi.p|Nanoce1779_2|658648|organism=Nannochloropsis oceanica|type=CDS|length=333bp|location=Sequence derived from alignment at scaffold_32:108620..109117- (Nannochloropsis oceanica)
ATGTTGAATCGTGCGATTGTGGAAGGGGTGGGACATTCAGAGGCAAAGGA
AGATACGTCAAACGAGGGTAGGAGAAAACTAGTGATTGAGGTGCGGAAGA
TGATCACACATATCTTTAAGTCTGCTCCGATGAAAGCTGTGTTTGACGAG
TCGCAGACCAAATTGTTCGGCAACTCGCTCAAGCTCATTGATATGGCCAT
GCAGCGGTGGTCATCTGCTAAGCGAACGCTCTATCGCGTGTTTGCAGATT
GGAGAGCAATTCTGAGGACATATCGTAAGCGGAGCAAGTGGGTGTACCTC
AGAAAAAAGAGGCAGGAATTGGTGGAGCTATAG
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Synonyms
Publications