jgi.p|Nanoce1779_2|633339, mRNA_9798 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|633339
Unique Name	mRNA_9798
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2819
Alignment location	scaffold_32:103819..106637 -

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Properties


Property Name	Value
TranscriptId	633425
Track	FilteredModels2
ProteinId	633339

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_32	supercontig	scaffold_32:103819..106637 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|633339	gene_9798	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|633339	mRNA_9798-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_9798	CDS_9798	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_32:103819..106637-
coding sequence from alignment at scaffold_32:103819..106637-

mRNA sequence

>mRNA_9798 ID=mRNA_9798|Name=jgi.p|Nanoce1779_2|633339|organism=Nannochloropsis oceanica|type=mRNA|length=2819bp
CAGCATCTGGCAGGCGACCTCAGCAAGATATGGCAGGAAGGCCTAGCTCT
GACTGGCATTTAAGAATTGGCGCGCTACAGAATCTCGATGGATTTTCAGA
ACGCAAACGTTTAAGCAGCAAGACTACGCGTGCGAGAACCATCTTAAGGA
AAAGGGTCATATCGGCTATTCTGTTGGGCTTGTTCTTGCTGATCATTGGA
CAGACTTTGATGCTAATAAATAAGAATGAAACAAGAAATATTTTGTTATC
TACAGACTTGCCAGAACGCCTGTTGCATGTAAATCTTGGCTCTGACAGGC
TAAGAGATAGCTACAACGTAACGAGACGTACTCTCTCAAGAAGACATCAA
GAATACAAGGAGGCTTTATCGTGTGCATCCCCAAACGTTGGGACCAGCAC
TCGAGTATTTTATATATCAGAAACCCAATCTGGCGGATCAAGAAAGTATA
TTCAAGACCTAATCACGCATTACAGCTTGTATGGTATTGAGTTTCATAGG
CTTTCGAACAAGGCAGCTGCCTTAGAAGCAACGGACAAATTTATGGAAAA
CGACATTCTTCTAGTTCAATATCTTTTGTACACAGATTTTACATTTGACG
ACATCCACAACCTGGTAGATACTTACCGGCTACGTCTGGTTGTCCCGATC
CACGATATGTACTTTTTTTCTAACGAGTCGTTGGAATATGAATATGATCC
CATCATCCACTCTGCTGACCAGGGGAAAAAACTCAGCGCAAAGCAAAGGC
TTTTTCTAGAGAAAGCAGATCATATTATTTTTCCGTCTGCTTACATCTAT
GACGTCTTTCACAAGGCTATCAAGCTAAAGTCCATGGTTGTGGTCCCACA
TATTGACCAGAAGTTGTACCGTCGTACGTATATTCCTGCACTCAAGGCCA
ATATCAATATAGGCATCATAACAGAAACATCTCACACTAAGGGGCTAGAT
CTATTGCAAAAGCTTTTTAGATATGGAAGGAGGAAGAGGGCGGACCGCGT
CAAATTTTTCGTTTACTCCAAGTATGACAACAAAGGAGAGCCTAATGTCT
TTATTCGAGGAGAGTACATTGAAAATGACATTTATCGCAAGTTGAAGCAG
GACAAAGTTCACGGTCTATTGTTTCTAAACAATTACCCTGAGACGTATAG
TTATGCTTTTACAAAAGGGATTAATTCGGGACTGCCAATCCTCTACACAA
ACATGGGTGCAATTGCAGATCGGGTCGCTGCGGAGAATAACACCGCAAAA
TATATCGCCACTGACAATACCGATGTGACTCAAAAGTTTGACGCTTTACT
TACATTTATTCGAAAGCACGCCGGACTGGGAGAAAAAAATCAGATATTAT
CTGTGCTTGAAAAGGAGAACCTCGTCGAAATACCAGTATTTTATGACAGT
CTCTTTTTTAGAAGCGCTTTGGATATCATCAATTGCGTCCAAAAAAATCA
CGACCGTTTTAGCAAGCATTTTGCCAAAATTCATCGCCATATTCAGCCCT
ATGCCATATTTTTCCCTCAATTTCATCCCATCCCTGAAAATAACATCAAC
TTTTATGAAGGCTATACGGATATGACGAATTTAGTCGCAGCCAAGCTGGA
GGATCCCAGCTTACTAACACCGCTGAAAAATTTCTTGGGCTTCTACGATT
TGGTGCAAAATAATGAGATGATTCCAAGACAAATTCAGATTGCAAAGTCA
TATGGCATGGCTGGATTCGCCATTTACTACTATTGGTTCAGCGACAATTC
CATAAGTAAAAAAAATATGGTGTTCGATAAGGTAATTGACCGATTTTTTG
ATAGTGTCTTGAAGGATTTCTCAGTCTTCTTCGTGTATTGTAACGAGGCA
TGGACAAAGAACGTGGCATTTGGAACCCATAGAACTGGATACACGATTAT
GAATGACTATACTGAAGAGAATATCAAGGCAAATATACATCATCTTATCA
AGTATTTTAAGCACCAAAATTATCGCAAGATTAGAAATAGGCCACTCTTC
TTCTTGCATCATCCGCACGAGATGACAGATACTGAGATTCACTTGCTGAA
GGTAGTAGGTGATTCAGTCACTCGAGAGAACGGCTTTGATGGAATTGAAC
TGATCATTGACAGCAGGCAAGGGGCGTACGCGGGTTTTCCTGGATACTAC
TTGCATGCAAATTACAAGTCACCAAAATCCACAGCGTTCATGAAATCCTC
AAGCCGCCCCCAGCATATCGACTACAAAGCGTATGTGCGCAAATTCTTGC
CGAACGAGGAGAAGTTGGGAGACAATTCGAGCACGATAAATTCAATTTTT
ACAAATTTTGACAACACAGTGCGTTTTTATGCACACGACGGGGACCGGCA
ATTCGAGGGTGTGGGCAACAAGACAATGTTCATGACACGGACTCAAGGAA
GAAGTGTTACTCTCTTTAAGGAGTTTTTAGATGTGCAATTCGAGAAATAC
TCTCAAAAGTCTGATCCCATTTTGCAGATATTCCTAGTCAATGCTTGGAA
CGAATGGGGTGAGCAAATGGTGATGGAGCCGTCGAATGAAGAGGGATTCG
CGTACCTTGAAGCTTTTCAGGAGAGACTATTGCTCGCCCCTCTTTCAGAT
AGCGCACATGACAATGCATCAAGTAGATGGGGTGGAAAGGGAGTAAATCC
ATGATATGCTAAAATGAAACGTATTTTCATAGAAAATGTAGTCCAGGTCT
TGTACTCCAAGAATCAAGGGAAAGACGGAGAATGGAGGGGGTTGAAGAGT
TCATAGCAAGCGTTGAGCCCCAAAATCACGCTCTTGGTAAAATGTATTGA
GAGAAAATCAATCAGGAAA

protein sequence of jgi.p|Nanoce1779_2|633339

>mRNA_9798-protein ID=mRNA_9798-protein|Name=jgi.p|Nanoce1779_2|633339|organism=Nannochloropsis oceanica|type=polypeptide|length=875bp
MAGRPSSDWHLRIGALQNLDGFSERKRLSSKTTRARTILRKRVISAILLG
LFLLIIGQTLMLINKNETRNILLSTDLPERLLHVNLGSDRLRDSYNVTRR
TLSRRHQEYKEALSCASPNVGTSTRVFYISETQSGGSRKYIQDLITHYSL
YGIEFHRLSNKAAALEATDKFMENDILLVQYLLYTDFTFDDIHNLVDTYR
LRLVVPIHDMYFFSNESLEYEYDPIIHSADQGKKLSAKQRLFLEKADHII
FPSAYIYDVFHKAIKLKSMVVVPHIDQKLYRRTYIPALKANINIGIITET
SHTKGLDLLQKLFRYGRRKRADRVKFFVYSKYDNKGEPNVFIRGEYIEND
IYRKLKQDKVHGLLFLNNYPETYSYAFTKGINSGLPILYTNMGAIADRVA
AENNTAKYIATDNTDVTQKFDALLTFIRKHAGLGEKNQILSVLEKENLVE
IPVFYDSLFFRSALDIINCVQKNHDRFSKHFAKIHRHIQPYAIFFPQFHP
IPENNINFYEGYTDMTNLVAAKLEDPSLLTPLKNFLGFYDLVQNNEMIPR
QIQIAKSYGMAGFAIYYYWFSDNSISKKNMVFDKVIDRFFDSVLKDFSVF
FVYCNEAWTKNVAFGTHRTGYTIMNDYTEENIKANIHHLIKYFKHQNYRK
IRNRPLFFLHHPHEMTDTEIHLLKVVGDSVTRENGFDGIELIIDSRQGAY
AGFPGYYLHANYKSPKSTAFMKSSSRPQHIDYKAYVRKFLPNEEKLGDNS
STINSIFTNFDNTVRFYAHDGDRQFEGVGNKTMFMTRTQGRSVTLFKEFL
DVQFEKYSQKSDPILQIFLVNAWNEWGEQMVMEPSNEEGFAYLEAFQERL
LLAPLSDSAHDNASSRWGGKGVNP*

mRNA from alignment at scaffold_32:103819..106637-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9798 ID=mRNA_9798|Name=jgi.p|Nanoce1779_2|633339|organism=Nannochloropsis oceanica|type=mRNA|length=2819bp|location=Sequence derived from alignment at scaffold_32:103819..106637- (Nannochloropsis oceanica)
CAGCATCTGGCAGGCGACCTCAGCAAGATATGGCAGGAAGGCCTAGCTCT
GACTGGCATTTAAGAATTGGCGCGCTACAGAATCTCGATGGATTTTCAGA
ACGCAAACGTTTAAGCAGCAAGACTACGCGTGCGAGAACCATCTTAAGGA
AAAGGGTCATATCGGCTATTCTGTTGGGCTTGTTCTTGCTGATCATTGGA
CAGACTTTGATGCTAATAAATAAGAATGAAACAAGAAATATTTTGTTATC
TACAGACTTGCCAGAACGCCTGTTGCATGTAAATCTTGGCTCTGACAGGC
TAAGAGATAGCTACAACGTAACGAGACGTACTCTCTCAAGAAGACATCAA
GAATACAAGGAGGCTTTATCGTGTGCATCCCCAAACGTTGGGACCAGCAC
TCGAGTATTTTATATATCAGAAACCCAATCTGGCGGATCAAGAAAGTATA
TTCAAGACCTAATCACGCATTACAGCTTGTATGGTATTGAGTTTCATAGG
CTTTCGAACAAGGCAGCTGCCTTAGAAGCAACGGACAAATTTATGGAAAA
CGACATTCTTCTAGTTCAATATCTTTTGTACACAGATTTTACATTTGACG
ACATCCACAACCTGGTAGATACTTACCGGCTACGTCTGGTTGTCCCGATC
CACGATATGTACTTTTTTTCTAACGAGTCGTTGGAATATGAATATGATCC
CATCATCCACTCTGCTGACCAGGGGAAAAAACTCAGCGCAAAGCAAAGGC
TTTTTCTAGAGAAAGCAGATCATATTATTTTTCCGTCTGCTTACATCTAT
GACGTCTTTCACAAGGCTATCAAGCTAAAGTCCATGGTTGTGGTCCCACA
TATTGACCAGAAGTTGTACCGTCGTACGTATATTCCTGCACTCAAGGCCA
ATATCAATATAGGCATCATAACAGAAACATCTCACACTAAGGGGCTAGAT
CTATTGCAAAAGCTTTTTAGATATGGAAGGAGGAAGAGGGCGGACCGCGT
CAAATTTTTCGTTTACTCCAAGTATGACAACAAAGGAGAGCCTAATGTCT
TTATTCGAGGAGAGTACATTGAAAATGACATTTATCGCAAGTTGAAGCAG
GACAAAGTTCACGGTCTATTGTTTCTAAACAATTACCCTGAGACGTATAG
TTATGCTTTTACAAAAGGGATTAATTCGGGACTGCCAATCCTCTACACAA
ACATGGGTGCAATTGCAGATCGGGTCGCTGCGGAGAATAACACCGCAAAA
TATATCGCCACTGACAATACCGATGTGACTCAAAAGTTTGACGCTTTACT
TACATTTATTCGAAAGCACGCCGGACTGGGAGAAAAAAATCAGATATTAT
CTGTGCTTGAAAAGGAGAACCTCGTCGAAATACCAGTATTTTATGACAGT
CTCTTTTTTAGAAGCGCTTTGGATATCATCAATTGCGTCCAAAAAAATCA
CGACCGTTTTAGCAAGCATTTTGCCAAAATTCATCGCCATATTCAGCCCT
ATGCCATATTTTTCCCTCAATTTCATCCCATCCCTGAAAATAACATCAAC
TTTTATGAAGGCTATACGGATATGACGAATTTAGTCGCAGCCAAGCTGGA
GGATCCCAGCTTACTAACACCGCTGAAAAATTTCTTGGGCTTCTACGATT
TGGTGCAAAATAATGAGATGATTCCAAGACAAATTCAGATTGCAAAGTCA
TATGGCATGGCTGGATTCGCCATTTACTACTATTGGTTCAGCGACAATTC
CATAAGTAAAAAAAATATGGTGTTCGATAAGGTAATTGACCGATTTTTTG
ATAGTGTCTTGAAGGATTTCTCAGTCTTCTTCGTGTATTGTAACGAGGCA
TGGACAAAGAACGTGGCATTTGGAACCCATAGAACTGGATACACGATTAT
GAATGACTATACTGAAGAGAATATCAAGGCAAATATACATCATCTTATCA
AGTATTTTAAGCACCAAAATTATCGCAAGATTAGAAATAGGCCACTCTTC
TTCTTGCATCATCCGCACGAGATGACAGATACTGAGATTCACTTGCTGAA
GGTAGTAGGTGATTCAGTCACTCGAGAGAACGGCTTTGATGGAATTGAAC
TGATCATTGACAGCAGGCAAGGGGCGTACGCGGGTTTTCCTGGATACTAC
TTGCATGCAAATTACAAGTCACCAAAATCCACAGCGTTCATGAAATCCTC
AAGCCGCCCCCAGCATATCGACTACAAAGCGTATGTGCGCAAATTCTTGC
CGAACGAGGAGAAGTTGGGAGACAATTCGAGCACGATAAATTCAATTTTT
ACAAATTTTGACAACACAGTGCGTTTTTATGCACACGACGGGGACCGGCA
ATTCGAGGGTGTGGGCAACAAGACAATGTTCATGACACGGACTCAAGGAA
GAAGTGTTACTCTCTTTAAGGAGTTTTTAGATGTGCAATTCGAGAAATAC
TCTCAAAAGTCTGATCCCATTTTGCAGATATTCCTAGTCAATGCTTGGAA
CGAATGGGGTGAGCAAATGGTGATGGAGCCGTCGAATGAAGAGGGATTCG
CGTACCTTGAAGCTTTTCAGGAGAGACTATTGCTCGCCCCTCTTTCAGAT
AGCGCACATGACAATGCATCAAGTAGATGGGGTGGAAAGGGAGTAAATCC
ATGATATGCTAAAATGAAACGTATTTTCATAGAAAATGTAGTCCAGGTCT
TGTACTCCAAGAATCAAGGGAAAGACGGAGAATGGAGGGGGTTGAAGAGT
TCATAGCAAGCGTTGAGCCCCAAAATCACGCTCTTGGTAAAATGTATTGA
GAGAAAATCAATCAGGAAA

Coding sequence (CDS) from alignment at scaffold_32:103819..106637-

>mRNA_9798 ID=mRNA_9798|Name=jgi.p|Nanoce1779_2|633339|organism=Nannochloropsis oceanica|type=CDS|length=2625bp|location=Sequence derived from alignment at scaffold_32:103819..106637- (Nannochloropsis oceanica)
ATGGCAGGAAGGCCTAGCTCTGACTGGCATTTAAGAATTGGCGCGCTACA
GAATCTCGATGGATTTTCAGAACGCAAACGTTTAAGCAGCAAGACTACGC
GTGCGAGAACCATCTTAAGGAAAAGGGTCATATCGGCTATTCTGTTGGGC
TTGTTCTTGCTGATCATTGGACAGACTTTGATGCTAATAAATAAGAATGA
AACAAGAAATATTTTGTTATCTACAGACTTGCCAGAACGCCTGTTGCATG
TAAATCTTGGCTCTGACAGGCTAAGAGATAGCTACAACGTAACGAGACGT
ACTCTCTCAAGAAGACATCAAGAATACAAGGAGGCTTTATCGTGTGCATC
CCCAAACGTTGGGACCAGCACTCGAGTATTTTATATATCAGAAACCCAAT
CTGGCGGATCAAGAAAGTATATTCAAGACCTAATCACGCATTACAGCTTG
TATGGTATTGAGTTTCATAGGCTTTCGAACAAGGCAGCTGCCTTAGAAGC
AACGGACAAATTTATGGAAAACGACATTCTTCTAGTTCAATATCTTTTGT
ACACAGATTTTACATTTGACGACATCCACAACCTGGTAGATACTTACCGG
CTACGTCTGGTTGTCCCGATCCACGATATGTACTTTTTTTCTAACGAGTC
GTTGGAATATGAATATGATCCCATCATCCACTCTGCTGACCAGGGGAAAA
AACTCAGCGCAAAGCAAAGGCTTTTTCTAGAGAAAGCAGATCATATTATT
TTTCCGTCTGCTTACATCTATGACGTCTTTCACAAGGCTATCAAGCTAAA
GTCCATGGTTGTGGTCCCACATATTGACCAGAAGTTGTACCGTCGTACGT
ATATTCCTGCACTCAAGGCCAATATCAATATAGGCATCATAACAGAAACA
TCTCACACTAAGGGGCTAGATCTATTGCAAAAGCTTTTTAGATATGGAAG
GAGGAAGAGGGCGGACCGCGTCAAATTTTTCGTTTACTCCAAGTATGACA
ACAAAGGAGAGCCTAATGTCTTTATTCGAGGAGAGTACATTGAAAATGAC
ATTTATCGCAAGTTGAAGCAGGACAAAGTTCACGGTCTATTGTTTCTAAA
CAATTACCCTGAGACGTATAGTTATGCTTTTACAAAAGGGATTAATTCGG
GACTGCCAATCCTCTACACAAACATGGGTGCAATTGCAGATCGGGTCGCT
GCGGAGAATAACACCGCAAAATATATCGCCACTGACAATACCGATGTGAC
TCAAAAGTTTGACGCTTTACTTACATTTATTCGAAAGCACGCCGGACTGG
GAGAAAAAAATCAGATATTATCTGTGCTTGAAAAGGAGAACCTCGTCGAA
ATACCAGTATTTTATGACAGTCTCTTTTTTAGAAGCGCTTTGGATATCAT
CAATTGCGTCCAAAAAAATCACGACCGTTTTAGCAAGCATTTTGCCAAAA
TTCATCGCCATATTCAGCCCTATGCCATATTTTTCCCTCAATTTCATCCC
ATCCCTGAAAATAACATCAACTTTTATGAAGGCTATACGGATATGACGAA
TTTAGTCGCAGCCAAGCTGGAGGATCCCAGCTTACTAACACCGCTGAAAA
ATTTCTTGGGCTTCTACGATTTGGTGCAAAATAATGAGATGATTCCAAGA
CAAATTCAGATTGCAAAGTCATATGGCATGGCTGGATTCGCCATTTACTA
CTATTGGTTCAGCGACAATTCCATAAGTAAAAAAAATATGGTGTTCGATA
AGGTAATTGACCGATTTTTTGATAGTGTCTTGAAGGATTTCTCAGTCTTC
TTCGTGTATTGTAACGAGGCATGGACAAAGAACGTGGCATTTGGAACCCA
TAGAACTGGATACACGATTATGAATGACTATACTGAAGAGAATATCAAGG
CAAATATACATCATCTTATCAAGTATTTTAAGCACCAAAATTATCGCAAG
ATTAGAAATAGGCCACTCTTCTTCTTGCATCATCCGCACGAGATGACAGA
TACTGAGATTCACTTGCTGAAGGTAGTAGGTGATTCAGTCACTCGAGAGA
ACGGCTTTGATGGAATTGAACTGATCATTGACAGCAGGCAAGGGGCGTAC
GCGGGTTTTCCTGGATACTACTTGCATGCAAATTACAAGTCACCAAAATC
CACAGCGTTCATGAAATCCTCAAGCCGCCCCCAGCATATCGACTACAAAG
CGTATGTGCGCAAATTCTTGCCGAACGAGGAGAAGTTGGGAGACAATTCG
AGCACGATAAATTCAATTTTTACAAATTTTGACAACACAGTGCGTTTTTA
TGCACACGACGGGGACCGGCAATTCGAGGGTGTGGGCAACAAGACAATGT
TCATGACACGGACTCAAGGAAGAAGTGTTACTCTCTTTAAGGAGTTTTTA
GATGTGCAATTCGAGAAATACTCTCAAAAGTCTGATCCCATTTTGCAGAT
ATTCCTAGTCAATGCTTGGAACGAATGGGGTGAGCAAATGGTGATGGAGC
CGTCGAATGAAGAGGGATTCGCGTACCTTGAAGCTTTTCAGGAGAGACTA
TTGCTCGCCCCTCTTTCAGATAGCGCACATGACAATGCATCAAGTAGATG
GGGTGGAAAGGGAGTAAATCCATGA

Synonyms

Publications