jgi.p|Nanoce1779_2|633336, mRNA_9796 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|633336
Unique Name	mRNA_9796
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2044
Alignment location	scaffold_32:91951..93994 +

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Properties


Property Name	Value
TranscriptId	633422
Track	FilteredModels2
ProteinId	633336

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_32	supercontig	scaffold_32:91951..93994 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|633336	gene_9796	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|633336	mRNA_9796-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_9796	CDS_9796	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_32:91951..93994+
coding sequence from alignment at scaffold_32:91951..93994+

mRNA sequence

>mRNA_9796 ID=mRNA_9796|Name=jgi.p|Nanoce1779_2|633336|organism=Nannochloropsis oceanica|type=mRNA|length=2044bp
AGACAGGGTGGTAGAATGACGAAAAGGCACGCGAATATGAGCAAGCCTGC
CTTCATGCTGCTGATCCTCATTACAAGGTGAAACATACATGTTCAAACAA
ACGACTCCTTAAAGTTTTATCTTCTAGGTTCACAAAAATAATCGCTTTTG
CAGTCTATTGATAAGCCTTTTGGTTTCACAGGTACCCACCTTGGCGTCCC
CCCCATCATATCCTTGGGACCATATGTTGTTACTCCAAGTGGGTAACAAA
TATAATTTGACAGCAAAGGATTTCTCCGGATGGCAACTATTGACTGATCA
AAACAAGAGCAAGGTATTCCGTCGACAGAATATCATCTTAAAGATTTCAG
ATGCTCTGTTTCCGCATACTCAATATGAGATAGGGCGGACTGAATGCATC
GTGCTCAATTATATTGAGGCCAAGATGCCTGAAACTCATCACTTTCCCCG
GTGCTTAATGTCATCCACAGTTTGGATTGATGGAGTCAAAAGATATGCAA
CCGCAATCCCCTTCTTAAAAGGCGAGCCTTTTGAGGATGCAATAATAAAA
TCCAATGCAACACAGATTTACAGTATTGTTGATTCATTGCTATCAGCGTT
AGAGAGGATGAATGAGATGGGTATTACTCATAGGGATATCGATACAAGAA
ATGTCCTCGTTGACAATCTGGAATCAGTGAAAGTCTTAGACTTTGCATTA
GCGACGTCGCCGCTCGCCCCAGCAGAAGGGCAGACAGTAATGAGTTTGGG
GCTTCATAAGCCGCCTGACGTTGATCTTTGCGGATTTGATGATCTCTTTT
CTGCTGGCGTCATGTTAAGACAAGCACTTGTCAAGCGGCGCGGTAATGTT
CCCAAAGGGATACATAATATTGTGTACCACATTACGAGAGACAAATGCAT
TGATAGGATTCGTGATTTCGCAAGATTAAGGGCTATACTCTATCAGTATG
GCAAAGTATCGGATACCGTCGCACCGTGCTATAATGCCAATGCACATGTT
ATGAACACCACAGTCGGTCAAGAGGAAGAGTGCCTACAGGTAACCGGCTA
TCAGGTTTTCAAAGCATGCAAAAATAGCTACGTGACATCGACAAACGATT
ATTTGGATCTAAGACTTCGAGCGTTTGATGGTATCGATTTAAACGGTACG
CGATTGATGGACATGGGTGGAAACTCCGGATTTTACAGTCTTTGGGCTCT
CCAACACGGCTCTTTGTCGAGTGTAATTATTGAACAAGATATCTACGCTA
TCTCAGCTGGACAGATGGTCGCTGACTTTCTCTCGCTGGACCTGAAGTAT
ACCTCTTTCCTAAATATCCAAGAGGCTGACATCGTTATGGCCTTTGCCAT
CGTACACTGGCTTATGTCCTGCTCACAATCGTTCGGAAATTTAGCTGATG
TGGTGTATTTCTTAAGAAAGCTTACACGCTCAACGTTGCTGGTCGAATGG
ATCGACCCTTTAGATGACGCCATCCAAACCTTTGGGCACGTCGATCCCTC
CTTCTCTTATACGCGAATCAATTTTGAAATGTTGTTGAAGCAATACTTCT
CCTCATTTCGATTTGTAGTGAAATCACGAGACCACCGGTATATTTATCAG
GCCAAGGTTTGATTTCCCAACAATTTCCAAACCTGTTTGCGTGAACGGCC
GTGCTATTCATGATGTGGATGCGTACACAAATCGAGCCATTTGTCGCACC
CCTCAAGAAAGAGGATTACGAATGGCTGTCGATAAGCTACCGGCCAGAAC
TGCAGAGACAAATTGATGAAATAGATAGATTGCTCAATATCACACCATCC
ATCAGACCAAAATCTACCATTGAAATCATTTAAGGAAACAATTTTAAGCA
ATCCGCGTATAGACCGAGCCATAGGCTTCAATCAAAAAAATAATTCTAAA
TATACACGGTGGCAGAGCATTTACATAAAATAAGATAATGCCCTAATAAG
CTTTTATGCTCGGAGTTAGAATGCGTTGAAAGTCCATGTCTAATATACCA
ATAGCAGAGCCACTGCTGAAGGTAAGTAGACCCCACAGGCACAT

protein sequence of jgi.p|Nanoce1779_2|633336

>mRNA_9796-protein ID=mRNA_9796-protein|Name=jgi.p|Nanoce1779_2|633336|organism=Nannochloropsis oceanica|type=polypeptide|length=463bp
MLLLQVGNKYNLTAKDFSGWQLLTDQNKSKVFRRQNIILKISDALFPHTQ
YEIGRTECIVLNYIEAKMPETHHFPRCLMSSTVWIDGVKRYATAIPFLKG
EPFEDAIIKSNATQIYSIVDSLLSALERMNEMGITHRDIDTRNVLVDNLE
SVKVLDFALATSPLAPAEGQTVMSLGLHKPPDVDLCGFDDLFSAGVMLRQ
ALVKRRGNVPKGIHNIVYHITRDKCIDRIRDFARLRAILYQYGKVSDTVA
PCYNANAHVMNTTVGQEEECLQVTGYQVFKACKNSYVTSTNDYLDLRLRA
FDGIDLNGTRLMDMGGNSGFYSLWALQHGSLSSVIIEQDIYAISAGQMVA
DFLSLDLKYTSFLNIQEADIVMAFAIVHWLMSCSQSFGNLADVVYFLRKL
TRSTLLVEWIDPLDDAIQTFGHVDPSFSYTRINFEMLLKQYFSSFRFVVK
SRDHRYIYQAKV*

mRNA from alignment at scaffold_32:91951..93994+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9796 ID=mRNA_9796|Name=jgi.p|Nanoce1779_2|633336|organism=Nannochloropsis oceanica|type=mRNA|length=2044bp|location=Sequence derived from alignment at scaffold_32:91951..93994+ (Nannochloropsis oceanica)
AGACAGGGTGGTAGAATGACGAAAAGGCACGCGAATATGAGCAAGCCTGC
CTTCATGCTGCTGATCCTCATTACAAGGTGAAACATACATGTTCAAACAA
ACGACTCCTTAAAGTTTTATCTTCTAGGTTCACAAAAATAATCGCTTTTG
CAGTCTATTGATAAGCCTTTTGGTTTCACAGGTACCCACCTTGGCGTCCC
CCCCATCATATCCTTGGGACCATATGTTGTTACTCCAAGTGGGTAACAAA
TATAATTTGACAGCAAAGGATTTCTCCGGATGGCAACTATTGACTGATCA
AAACAAGAGCAAGGTATTCCGTCGACAGAATATCATCTTAAAGATTTCAG
ATGCTCTGTTTCCGCATACTCAATATGAGATAGGGCGGACTGAATGCATC
GTGCTCAATTATATTGAGGCCAAGATGCCTGAAACTCATCACTTTCCCCG
GTGCTTAATGTCATCCACAGTTTGGATTGATGGAGTCAAAAGATATGCAA
CCGCAATCCCCTTCTTAAAAGGCGAGCCTTTTGAGGATGCAATAATAAAA
TCCAATGCAACACAGATTTACAGTATTGTTGATTCATTGCTATCAGCGTT
AGAGAGGATGAATGAGATGGGTATTACTCATAGGGATATCGATACAAGAA
ATGTCCTCGTTGACAATCTGGAATCAGTGAAAGTCTTAGACTTTGCATTA
GCGACGTCGCCGCTCGCCCCAGCAGAAGGGCAGACAGTAATGAGTTTGGG
GCTTCATAAGCCGCCTGACGTTGATCTTTGCGGATTTGATGATCTCTTTT
CTGCTGGCGTCATGTTAAGACAAGCACTTGTCAAGCGGCGCGGTAATGTT
CCCAAAGGGATACATAATATTGTGTACCACATTACGAGAGACAAATGCAT
TGATAGGATTCGTGATTTCGCAAGATTAAGGGCTATACTCTATCAGTATG
GCAAAGTATCGGATACCGTCGCACCGTGCTATAATGCCAATGCACATGTT
ATGAACACCACAGTCGGTCAAGAGGAAGAGTGCCTACAGGTAACCGGCTA
TCAGGTTTTCAAAGCATGCAAAAATAGCTACGTGACATCGACAAACGATT
ATTTGGATCTAAGACTTCGAGCGTTTGATGGTATCGATTTAAACGGTACG
CGATTGATGGACATGGGTGGAAACTCCGGATTTTACAGTCTTTGGGCTCT
CCAACACGGCTCTTTGTCGAGTGTAATTATTGAACAAGATATCTACGCTA
TCTCAGCTGGACAGATGGTCGCTGACTTTCTCTCGCTGGACCTGAAGTAT
ACCTCTTTCCTAAATATCCAAGAGGCTGACATCGTTATGGCCTTTGCCAT
CGTACACTGGCTTATGTCCTGCTCACAATCGTTCGGAAATTTAGCTGATG
TGGTGTATTTCTTAAGAAAGCTTACACGCTCAACGTTGCTGGTCGAATGG
ATCGACCCTTTAGATGACGCCATCCAAACCTTTGGGCACGTCGATCCCTC
CTTCTCTTATACGCGAATCAATTTTGAAATGTTGTTGAAGCAATACTTCT
CCTCATTTCGATTTGTAGTGAAATCACGAGACCACCGGTATATTTATCAG
GCCAAGGTTTGATTTCCCAACAATTTCCAAACCTGTTTGCGTGAACGGCC
GTGCTATTCATGATGTGGATGCGTACACAAATCGAGCCATTTGTCGCACC
CCTCAAGAAAGAGGATTACGAATGGCTGTCGATAAGCTACCGGCCAGAAC
TGCAGAGACAAATTGATGAAATAGATAGATTGCTCAATATCACACCATCC
ATCAGACCAAAATCTACCATTGAAATCATTTAAGGAAACAATTTTAAGCA
ATCCGCGTATAGACCGAGCCATAGGCTTCAATCAAAAAAATAATTCTAAA
TATACACGGTGGCAGAGCATTTACATAAAATAAGATAATGCCCTAATAAG
CTTTTATGCTCGGAGTTAGAATGCGTTGAAAGTCCATGTCTAATATACCA
ATAGCAGAGCCACTGCTGAAGGTAAGTAGACCCCACAGGCACAT

Coding sequence (CDS) from alignment at scaffold_32:91951..93994+

>mRNA_9796 ID=mRNA_9796|Name=jgi.p|Nanoce1779_2|633336|organism=Nannochloropsis oceanica|type=CDS|length=1389bp|location=Sequence derived from alignment at scaffold_32:91951..93994+ (Nannochloropsis oceanica)
ATGTTGTTACTCCAAGTGGGTAACAAATATAATTTGACAGCAAAGGATTT
CTCCGGATGGCAACTATTGACTGATCAAAACAAGAGCAAGGTATTCCGTC
GACAGAATATCATCTTAAAGATTTCAGATGCTCTGTTTCCGCATACTCAA
TATGAGATAGGGCGGACTGAATGCATCGTGCTCAATTATATTGAGGCCAA
GATGCCTGAAACTCATCACTTTCCCCGGTGCTTAATGTCATCCACAGTTT
GGATTGATGGAGTCAAAAGATATGCAACCGCAATCCCCTTCTTAAAAGGC
GAGCCTTTTGAGGATGCAATAATAAAATCCAATGCAACACAGATTTACAG
TATTGTTGATTCATTGCTATCAGCGTTAGAGAGGATGAATGAGATGGGTA
TTACTCATAGGGATATCGATACAAGAAATGTCCTCGTTGACAATCTGGAA
TCAGTGAAAGTCTTAGACTTTGCATTAGCGACGTCGCCGCTCGCCCCAGC
AGAAGGGCAGACAGTAATGAGTTTGGGGCTTCATAAGCCGCCTGACGTTG
ATCTTTGCGGATTTGATGATCTCTTTTCTGCTGGCGTCATGTTAAGACAA
GCACTTGTCAAGCGGCGCGGTAATGTTCCCAAAGGGATACATAATATTGT
GTACCACATTACGAGAGACAAATGCATTGATAGGATTCGTGATTTCGCAA
GATTAAGGGCTATACTCTATCAGTATGGCAAAGTATCGGATACCGTCGCA
CCGTGCTATAATGCCAATGCACATGTTATGAACACCACAGTCGGTCAAGA
GGAAGAGTGCCTACAGGTAACCGGCTATCAGGTTTTCAAAGCATGCAAAA
ATAGCTACGTGACATCGACAAACGATTATTTGGATCTAAGACTTCGAGCG
TTTGATGGTATCGATTTAAACGGTACGCGATTGATGGACATGGGTGGAAA
CTCCGGATTTTACAGTCTTTGGGCTCTCCAACACGGCTCTTTGTCGAGTG
TAATTATTGAACAAGATATCTACGCTATCTCAGCTGGACAGATGGTCGCT
GACTTTCTCTCGCTGGACCTGAAGTATACCTCTTTCCTAAATATCCAAGA
GGCTGACATCGTTATGGCCTTTGCCATCGTACACTGGCTTATGTCCTGCT
CACAATCGTTCGGAAATTTAGCTGATGTGGTGTATTTCTTAAGAAAGCTT
ACACGCTCAACGTTGCTGGTCGAATGGATCGACCCTTTAGATGACGCCAT
CCAAACCTTTGGGCACGTCGATCCCTCCTTCTCTTATACGCGAATCAATT
TTGAAATGTTGTTGAAGCAATACTTCTCCTCATTTCGATTTGTAGTGAAA
TCACGAGACCACCGGTATATTTATCAGGCCAAGGTTTGA

Synonyms

Publications