jgi.p|Nanoce1779_2|261892, mRNA_9793 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|261892
Unique Name	mRNA_9793
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1345
Alignment location	scaffold_32:81923..83616 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	261978
Track	FilteredModels2
ProteinId	261892

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_32	supercontig	scaffold_32:81923..83616 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|261892	gene_9793	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|261892	mRNA_9793-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_9793	CDS_9793	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_32:81923..83616+
coding sequence from alignment at scaffold_32:81923..83616+

mRNA sequence

>mRNA_9793 ID=mRNA_9793|Name=jgi.p|Nanoce1779_2|261892|organism=Nannochloropsis oceanica|type=mRNA|length=1345bp
GGATGACACTTTAAGGGAGTTGTTTGGAAAGACACGGGAGGCCACATTGT
GTCGTCCAGAGCTGCTGATTATTTCCTGTTTCTTTCGCTTTATATTTATG
GGACAGGCAGAAGCAGGTCGACAGACACTAAACTTGGCCGGAATCATCCC
CCACCCTATGAACTAGGACAATCCATCACAACCTCACCAACCATGCATGC
ATTCATCCCAACAGATGCCCAGTTCGAGGCCCTGACCGCGAACAAGAACA
AGACGGGCAACAAACACCCGAAAGGCGCTCACAACGATAAGACGAATCTG
CGCAAGGTGACTGGCTTCAATCTCTGCACCCAGGAGTACGATGCCTACAT
TGGCGGGACAGGTGTCGCTGGTACGGGCGCATTTTCGTACCCCGTCTACC
CTGGGGATTGTGCTGAGGTAGACGACATGACCGAGGAAATCGGCTCCTTG
AGCGCCACATGCTCAAACAACCCGTACGAGGGCGTGACCTTCACCCTCAC
TCGCCAAGCAGTGGGACGTGCTGCACTTCTGGATGACATTAGATCGCCTG
GCACCAACTTCAACCCAACTCCGCCTAATCAAGGAAATTTCGTCCAAGAC
TGGACTCCCCTTGAAATTGGTGAAACTACCACTACTGCACAGGTGCAGGC
ATCTGTGGATCAATTCTGCGTGGATCAACAAGGAACCAAGTTTGCGCCTT
TCAGTTCCAAGTGCTCCGCCGAGCTCCGCCTTAGCGGCGATAACCGCAAG
AATAAGCATCCAGGGAGCATCTTATCTTTCGACTTCACGACCAACACGAC
TTTAGTCCCCGCTGGCGGCACCTACACATCCATCACTCAATATGGAATGG
GCGGTGTTTGGACGACTAAAACTGCAGGCACAGGTGGAGGATTTTCAGTA
TCGTTCGCATTTGTTGACGTTGTAGAGCTCTTCGCTTACCAGGTGATCGA
CACTGTCACGTGCGTTGCCCGGCCTAACACGATTGACACGACGTTCAGTA
AGATCTATGGTGGAAGCGGCCGCTTTGAGAAGTACCCCGCCTCCAAGGTG
GCGTCGGTGGAGCTGGATACGATTCTGATTTTTTCTCCCGATGACGCAGC
TAATCCTGAGAACACGTTCGAGACTGAAAGCCAGGTATGGAACACCCAGC
TGGAAGTTAATTACGCGAAGAAGTACCTCGATTCCAGCATGCTTTAAGGG
CCATAGGCATGACAGTTCTATGTCGGGGTTTGTGGGAGAAGACTTCGTTT
CTTCCTGCACTCCATTCCCCGGAAGACTAGCATGCTTTTTCGTGTAAGGA
TATCACGGTGTTTTGAGGGTATGTCTATGCCCGTGTTTCTGTGGT

protein sequence of jgi.p|Nanoce1779_2|261892

>mRNA_9793-protein ID=mRNA_9793-protein|Name=jgi.p|Nanoce1779_2|261892|organism=Nannochloropsis oceanica|type=polypeptide|length=335bp
MHAFIPTDAQFEALTANKNKTGNKHPKGAHNDKTNLRKVTGFNLCTQEYD
AYIGGTGVAGTGAFSYPVYPGDCAEVDDMTEEIGSLSATCSNNPYEGVTF
TLTRQAVGRAALLDDIRSPGTNFNPTPPNQGNFVQDWTPLEIGETTTTAQ
VQASVDQFCVDQQGTKFAPFSSKCSAELRLSGDNRKNKHPGSILSFDFTT
NTTLVPAGGTYTSITQYGMGGVWTTKTAGTGGGFSVSFAFVDVVELFAYQ
VIDTVTCVARPNTIDTTFSKIYGGSGRFEKYPASKVASVELDTILIFSPD
DAANPENTFETESQVWNTQLEVNYAKKYLDSSML*

mRNA from alignment at scaffold_32:81923..83616+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9793 ID=mRNA_9793|Name=jgi.p|Nanoce1779_2|261892|organism=Nannochloropsis oceanica|type=mRNA|length=1694bp|location=Sequence derived from alignment at scaffold_32:81923..83616+ (Nannochloropsis oceanica)
GGATGACACTTTAAGGGAGTTGTTTGGAAAGACACGGGAGGCCACATTGT
GTCGTCCAGAGCTGCTGATTATTTCCTGTTTCTTTCGCTTTATATTTATG
GGACAGGCAGAAGCAGGTCGACAGACACTAAACTTGGCCGGAATCATCCC
CCACCCTATGAACTAGGACAATCCATCACAACCTCACCAACCATGCATGC
ATTCATCCCAACAGATGCCCAGTTCGAGGCCCTGACCGCGAACAAGAACA
AGACGGGCAACAAACACCCGAAAGGCGCTCACAACGATAAGACGAATCTG
CGCAAGGTGACTGGCTTCAATCTCTGCACCCAGGAGTACGATGCCTACAT
TGGCGGGACAGGTGTCGCTGGTACGGGCGCATTTTCGTACCCCGTCTACC
CTGGGGATTGTGCTGAGGTAGGCAAGGGTAATCGAAGCATTTTTTCCTGT
GAATTATTGTTATTCGGCCGGATAGAAAGGTGCCTGGCCCTCAATGCTCA
CCTCAGTACATACCGTACAACTAACACTCACAACTCACAATCATCACTGG
ACAATACGCAATTATCAGGTAGACGACATGACCGAGGAAATCGGCTCCTT
GAGCGCCACATGCTCAAACAACCCGTACGAGGGCGTGACCTTCACCCTCA
CTCGCCAAGCAGTGGGACGTGCTGCACTTCTGGATGACATTAGATCGCCT
GGCACCAACTTCAACCCAACTCCGCCTAATCAAGGAAATTTCGTCCAAGA
CTGGACTCCCCTTGAAATTGGTGAAACTACCACTACTGCACAGGTGCAGG
CATCTGTGGATCAATTCTGCGTGGATCAACAAGGAACCAAGTTTGCGCCT
TTCAGTTCCAAGTGCTCCGCCGAGCTCCGCCTTAGCGGCGATAACCGCAA
GAATAAGCATCCAGGGAGCATCTTATCTTTCGACTTCACGACCAACACGA
CTTTAGTCCCCGGTACGTTGTTGTGGCGATTCATATGAATGCGTGCATGC
TGCGTGTTGGGGGAAGGGTACAGATTCGATGCATTTGATGCATGTGGAAA
GTGTGTTACCTTAATTTTAATCCATTAACCCTACGTCTTGCACCATAATC
GGGATTCTCATTAACCTCTCCTCCCTTCCTCCCTTATTTTCCAACATTCT
TTCCCTGAAGCTGGCGGCACCTACACATCCATCACTCAATATGGAATGGG
CGGTGTTTGGACGACTAAAACTGCAGGCACAGGTGGAGGATTTTCAGTAT
CGTTCGCATTTGTTGACGTTGTAGAGCTCTTCGCTTACCAGGTGATCGAC
ACTGTCACGTGCGTTGCCCGGCCTAACACGATTGACACGACGTTCAGTAA
GATCTATGGTGGAAGCGGCCGCTTTGAGAAGTACCCCGCCTCCAAGGTGG
CGTCGGTGGAGCTGGATACGATTCTGATTTTTTCTCCCGATGACGCAGCT
AATCCTGAGAACACGTTCGAGACTGAAAGCCAGGTATGGAACACCCAGCT
GGAAGTTAATTACGCGAAGAAGTACCTCGATTCCAGCATGCTTTAAGGGC
CATAGGCATGACAGTTCTATGTCGGGGTTTGTGGGAGAAGACTTCGTTTC
TTCCTGCACTCCATTCCCCGGAAGACTAGCATGCTTTTTCGTGTAAGGAT
ATCACGGTGTTTTGAGGGTATGTCTATGCCCGTGTTTCTGTGGT

Coding sequence (CDS) from alignment at scaffold_32:81923..83616+

>mRNA_9793 ID=mRNA_9793|Name=jgi.p|Nanoce1779_2|261892|organism=Nannochloropsis oceanica|type=CDS|length=3015bp|location=Sequence derived from alignment at scaffold_32:81923..83616+ (Nannochloropsis oceanica)
ATGCATGCATTCATCCCAACAGATGCCCAGTTCGAGGCCCTGACCGCGAA
CAAGAACAAGACGGGCAACAAACACCCGAAAGGCGCTCACAACGATAAGA
CGAATCTGCGCAAGGTGACTGGCTTCAATCTCTGCACCCAGGAGTACGAT
GCCTACATTGGCGGGACAGGTGTCGCTGGTACGGGCGCATTTTCGTACCC
CGTCTACCCTGGGGATTGTGCTGAGGTAGACGACATGACCGAGGAAATCG
GCTCCTTGAGCGCCACATGCTCAAACAACCCGTACGAGGGCGTGACCTTC
ACCCTCACTCGCCAAGCAGTGGGACGTGCTGCACTTCTGGATGACATTAG
ATCGCCTGGCACCAACTTCAACCCAACTCCGCCTAATCAAGGAAATTTCG
TCCAAGACTGGACTCCCCTTGAAATTGGTGAAACTACCACTACTGCACAG
GTGCAGGCATCTGTGGATCAATTCTGCGTGGATCAACAAGGAACCAAGTT
TGCGCCTTTCAGTTCCAAGTGCTCCGCCGAGCTCCGCCTTAGCGGCGATA
ACCGCAAGAATAAGCATCCAGGGAGCATCTTATCTTTCGACTTCACGACC
AACACGACTTTAGTCCCCGCTGGCGGCACCTACACATCCATCACTCAATA
TGGAATGGGCGGTGTTTGGACGACTAAAACTGCAGGCACAGGTGGAGGAT
TTTCAGTATCGTTCGCATTTGTTGACGTTGTAGAGCTCTTCGCTTACCAG
GTGATCGACACTGTCACGTGCGTTGCCCGGCCTAACACGATTGACACGAC
GTTCAGTAAGATCTATGGTGGAAGCGGCCGCTTTGAGAAGTACCCCGCCT
CCAAGGTGGCGTCGGTGGAGCTGGATACGATTCTGATTTTTTCTCCCGAT
GACGCAGCTAATCCTGAGAACACGTTCGAGACTGAAAGCCAGGTATGGAA
CACCCAGCTGGAAGTTAATTACGCGAAGAAGTACCTCGATTCCAGCATGC
TTTAAATGCATGCATTCATCCCAACAGATGCCCAGTTCGAGGCCCTGACC
GCGAACAAGAACAAGACGGGCAACAAACACCCGAAAGGCGCTCACAACGA
TAAGACGAATCTGCGCAAGGTGACTGGCTTCAATCTCTGCACCCAGGAGT
ACGATGCCTACATTGGCGGGACAGGTGTCGCTGGTACGGGCGCATTTTCG
TACCCCGTCTACCCTGGGGATTGTGCTGAGGTAGACGACATGACCGAGGA
AATCGGCTCCTTGAGCGCCACATGCTCAAACAACCCGTACGAGGGCGTGA
CCTTCACCCTCACTCGCCAAGCAGTGGGACGTGCTGCACTTCTGGATGAC
ATTAGATCGCCTGGCACCAACTTCAACCCAACTCCGCCTAATCAAGGAAA
TTTCGTCCAAGACTGGACTCCCCTTGAAATTGGTGAAACTACCACTACTG
CACAGGTGCAGGCATCTGTGGATCAATTCTGCGTGGATCAACAAGGAACC
AAGTTTGCGCCTTTCAGTTCCAAGTGCTCCGCCGAGCTCCGCCTTAGCGG
CGATAACCGCAAGAATAAGCATCCAGGGAGCATCTTATCTTTCGACTTCA
CGACCAACACGACTTTAGTCCCCGCTGGCGGCACCTACACATCCATCACT
CAATATGGAATGGGCGGTGTTTGGACGACTAAAACTGCAGGCACAGGTGG
AGGATTTTCAGTATCGTTCGCATTTGTTGACGTTGTAGAGCTCTTCGCTT
ACCAGGTGATCGACACTGTCACGTGCGTTGCCCGGCCTAACACGATTGAC
ACGACGTTCAGTAAGATCTATGGTGGAAGCGGCCGCTTTGAGAAGTACCC
CGCCTCCAAGGTGGCGTCGGTGGAGCTGGATACGATTCTGATTTTTTCTC
CCGATGACGCAGCTAATCCTGAGAACACGTTCGAGACTGAAAGCCAGGTA
TGGAACACCCAGCTGGAAGTTAATTACGCGAAGAAGTACCTCGATTCCAG
CATGCTTTAAATGCATGCATTCATCCCAACAGATGCCCAGTTCGAGGCCC
TGACCGCGAACAAGAACAAGACGGGCAACAAACACCCGAAAGGCGCTCAC
AACGATAAGACGAATCTGCGCAAGGTGACTGGCTTCAATCTCTGCACCCA
GGAGTACGATGCCTACATTGGCGGGACAGGTGTCGCTGGTACGGGCGCAT
TTTCGTACCCCGTCTACCCTGGGGATTGTGCTGAGGTAGACGACATGACC
GAGGAAATCGGCTCCTTGAGCGCCACATGCTCAAACAACCCGTACGAGGG
CGTGACCTTCACCCTCACTCGCCAAGCAGTGGGACGTGCTGCACTTCTGG
ATGACATTAGATCGCCTGGCACCAACTTCAACCCAACTCCGCCTAATCAA
GGAAATTTCGTCCAAGACTGGACTCCCCTTGAAATTGGTGAAACTACCAC
TACTGCACAGGTGCAGGCATCTGTGGATCAATTCTGCGTGGATCAACAAG
GAACCAAGTTTGCGCCTTTCAGTTCCAAGTGCTCCGCCGAGCTCCGCCTT
AGCGGCGATAACCGCAAGAATAAGCATCCAGGGAGCATCTTATCTTTCGA
CTTCACGACCAACACGACTTTAGTCCCCGCTGGCGGCACCTACACATCCA
TCACTCAATATGGAATGGGCGGTGTTTGGACGACTAAAACTGCAGGCACA
GGTGGAGGATTTTCAGTATCGTTCGCATTTGTTGACGTTGTAGAGCTCTT
CGCTTACCAGGTGATCGACACTGTCACGTGCGTTGCCCGGCCTAACACGA
TTGACACGACGTTCAGTAAGATCTATGGTGGAAGCGGCCGCTTTGAGAAG
TACCCCGCCTCCAAGGTGGCGTCGGTGGAGCTGGATACGATTCTGATTTT
TTCTCCCGATGACGCAGCTAATCCTGAGAACACGTTCGAGACTGAAAGCC
AGGTATGGAACACCCAGCTGGAAGTTAATTACGCGAAGAAGTACCTCGAT
TCCAGCATGCTTTAA

Synonyms

Publications