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Properties
| Property Name | Value |
|---|
| TranscriptId | 673976 |
| Track | FilteredModels2 |
| ProteinId | 673890 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_32 | supercontig | scaffold_32:76557..78662 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_9792 ID=mRNA_9792|Name=jgi.p|Nanoce1779_2|673890|organism=Nannochloropsis oceanica|type=mRNA|length=1530bp
CACAGCCTTTTTTTGACTTCACTGCCAAGCTACCATGTTTCGCCAATCTG
CCCTCCTCTTTGTGGCCCTCCTCTGTATGGCAGATGCCCAGTTCGAGGCC
CTGACCGCGAACAAGAACAAGACGGGCAACAAACACCCGAAAGGCGCTCA
CAACGATAAGACGAATCTGCGCAAGGTGACTGGCTTCAATCTCTGCACCC
AGGAGTACGATGCCTACATTGGCGGGACAGGTGTCGCTGGTACGGGCGCA
TTTTCGTACCCCGTCTACCCTGGGGATTGTGCTGAGGTAGACGACATGAC
CGAGGAAATCGGCTCCTTGAGCGCCACATGCTCAAACAACCCGTACGAGG
GCGTGACCTTCACCCTCACTCGCCAAGCAGTGGGACGTGCTGCACTTCTG
GATGACATTAGATCGCCTGGCACCAACTTCAACCCAACTCCGCCTAATCA
AGGAAATTTCGTCCAAGACTGGACTCCCCTTGAAATTGGTGAAACTACCA
CTACTGCACAGGTGCAGGCATCTGTGGATCAATTCTGCGTGGATCAACAA
GGAACCAAGTTTGCGCCTTTCAGTTCCAAGTGCTCCGCCGAGCTCCGCCT
TAGCGGCGATAACCGCAAGAATAAGCATCCAGGGAGCATCTTATCTTTCG
ACTTCACGACCAACACGACTTTAGTCCCCGCTGGCGGCACCTACACATCC
ATCACTCAATATGGAATGGGCGGTGTTTGGACGACTAAAACTGCAGGCAC
AGGTGGAGGATTTTCAGTATCGTTCGCATTTGTTGACGTTGTAGAGCTCT
TCGCTTACCAGGTGATCGACACTGTCACGTGCGTTGCCCGGCCTAACACG
ATTGACACGACGTTCAGTAAGATCTATGGTGGAAGCGGCCGCTTTGAGAA
GTACCCCGCCTCCAAGGTGGCGTCGGTGGAGCTGGATACGATTCTGATTT
TTTCTCCCGATGACGCAGCTAATCCTGAGAACACGTTCGAGACTGAAAGC
CAGGTATGGAACACCCAGCTGGAAGTTAATTACGCGAAGAAGTACCTCGA
TTCCAGCATGCTTTAAGGGCCATAGGCATGACAGTTCTATGTCGGGGTTT
GTGGGAGAAGACTTCGTTTCTTCCTGCACTCCATTCCCCGGAAGACTAGC
ATGCTTTTTCGTGTAAGGATATCACGGTGTTTTGAGGGTATGTCTATGCC
CGTGTTTCTGTGGTTTGTGTCTGTTTTCTGTGTCTTGTCAGTCCAGTAAA
TCATAACAGGCTGCGTCCTGTTATTGGCTTGCCTGGTAGATGGAGAGCAC
TACTTTATGTGAAGGGCCACTGTCCGTCGTCGTGAACTCGAGGTACCACA
GGTACCTGCGGTATGTATTTTGTGTTGTGTGGAACTAGGTCTGGGGTGTG
TGTTTGGAAGAAGATCGCTATGGTAGATCAACGTCTCTGTGGGGGCGTGA
GCGTTGTGCCGGGAGAATGGAAGTATGCGGCGGATAAATGGCCCAAGAAA
CGAAGTATACAACGATATAGCGGATTTGAA back to topprotein sequence of jgi.p|Nanoce1779_2|673890 >mRNA_9792-protein ID=mRNA_9792-protein|Name=jgi.p|Nanoce1779_2|673890|organism=Nannochloropsis oceanica|type=polypeptide|length=344bp
MFRQSALLFVALLCMADAQFEALTANKNKTGNKHPKGAHNDKTNLRKVTG
FNLCTQEYDAYIGGTGVAGTGAFSYPVYPGDCAEVDDMTEEIGSLSATCS
NNPYEGVTFTLTRQAVGRAALLDDIRSPGTNFNPTPPNQGNFVQDWTPLE
IGETTTTAQVQASVDQFCVDQQGTKFAPFSSKCSAELRLSGDNRKNKHPG
SILSFDFTTNTTLVPAGGTYTSITQYGMGGVWTTKTAGTGGGFSVSFAFV
DVVELFAYQVIDTVTCVARPNTIDTTFSKIYGGSGRFEKYPASKVASVEL
DTILIFSPDDAANPENTFETESQVWNTQLEVNYAKKYLDSSML* back to topmRNA from alignment at scaffold_32:76557..78662+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_9792 ID=mRNA_9792|Name=jgi.p|Nanoce1779_2|673890|organism=Nannochloropsis oceanica|type=mRNA|length=2106bp|location=Sequence derived from alignment at scaffold_32:76557..78662+ (Nannochloropsis oceanica)
CACAGCCTTTTTTTGACTTCACTGCCAAGCTACCATGTTTCGCCAATCTG
CCCTCCTCTTTGTGGCCCTCCTCTGTATGGCAGGTAAGTAAGAGATGGAT
GACACTTTAAGGGAGTTGTTTGGAAAGACACGGGAGGCCACATTGTGTCG
TCCAGAGCTGCTGATTATTTCCTGTTTCTTTCGCTTTATATTTATGGGAC
AGGCAGAAGCAGGTCGACAGACACTAAACTTGGCCGGAATCATCCCCCAC
CCTATGAACTAGGACAATCCATCACAACCTCACCAACCATGCATGCATTC
ATCCCAACAGATGCCCAGTTCGAGGCCCTGACCGCGAACAAGAACAAGAC
GGGCAACAAACACCCGAAAGGCGCTCACAACGATAAGACGAATCTGCGCA
AGGTGACTGGCTTCAATCTCTGCACCCAGGAGTACGATGCCTACATTGGC
GGGACAGGTGTCGCTGGTACGGGCGCATTTTCGTACCCCGTCTACCCTGG
GGATTGTGCTGAGGTAGGCAAGGGTAATCGAAGCATTTTTTCCTGTGAAT
TATTGTTATTCGGCCGGATAGAAAGGTGCCTGGCCCTCAATGCTCACCTC
AGTACATACCGTACAACTAACACTCACAACTCACAATCATCACTGGACAA
TACGCAATTATCAGGTAGACGACATGACCGAGGAAATCGGCTCCTTGAGC
GCCACATGCTCAAACAACCCGTACGAGGGCGTGACCTTCACCCTCACTCG
CCAAGCAGTGGGACGTGCTGCACTTCTGGATGACATTAGATCGCCTGGCA
CCAACTTCAACCCAACTCCGCCTAATCAAGGAAATTTCGTCCAAGACTGG
ACTCCCCTTGAAATTGGTGAAACTACCACTACTGCACAGGTGCAGGCATC
TGTGGATCAATTCTGCGTGGATCAACAAGGAACCAAGTTTGCGCCTTTCA
GTTCCAAGTGCTCCGCCGAGCTCCGCCTTAGCGGCGATAACCGCAAGAAT
AAGCATCCAGGGAGCATCTTATCTTTCGACTTCACGACCAACACGACTTT
AGTCCCCGGTACGTTGTTGTGGCGATTCATATGAATGCGTGCATGCTGCG
TGTTGGGGGAAGGGTACAGATTCGATGCATTTGATGCATGTGGAAAGTGT
GTTACCTTAATTTTAATCCATTAACCCTACGTCTTGCACCATAATCGGGA
TTCTCATTAACCTCTCCTCCCTTCCTCCCTTATTTTCCAACATTCTTTCC
CTGAAGCTGGCGGCACCTACACATCCATCACTCAATATGGAATGGGCGGT
GTTTGGACGACTAAAACTGCAGGCACAGGTGGAGGATTTTCAGTATCGTT
CGCATTTGTTGACGTTGTAGAGCTCTTCGCTTACCAGGTGATCGACACTG
TCACGTGCGTTGCCCGGCCTAACACGATTGACACGACGTTCAGTAAGATC
TATGGTGGAAGCGGCCGCTTTGAGAAGTACCCCGCCTCCAAGGTGGCGTC
GGTGGAGCTGGATACGATTCTGATTTTTTCTCCCGATGACGCAGCTAATC
CTGAGAACACGTTCGAGACTGAAAGCCAGGTATGGAACACCCAGCTGGAA
GTTAATTACGCGAAGAAGTACCTCGATTCCAGCATGCTTTAAGGGCCATA
GGCATGACAGTTCTATGTCGGGGTTTGTGGGAGAAGACTTCGTTTCTTCC
TGCACTCCATTCCCCGGAAGACTAGCATGCTTTTTCGTGTAAGGATATCA
CGGTGTTTTGAGGGTATGTCTATGCCCGTGTTTCTGTGGTTTGTGTCTGT
TTTCTGTGTCTTGTCAGTCCAGTAAATCATAACAGGCTGCGTCCTGTTAT
TGGCTTGCCTGGTAGATGGAGAGCACTACTTTATGTGAAGGGCCACTGTC
CGTCGTCGTGAACTCGAGGTACCACAGGTACCTGCGGTATGTATTTTGTG
TTGTGTGGAACTAGGTCTGGGGTGTGTGTTTGGAAGAAGATCGCTATGGT
AGATCAACGTCTCTGTGGGGGCGTGAGCGTTGTGCCGGGAGAATGGAAGT
ATGCGGCGGATAAATGGCCCAAGAAACGAAGTATACAACGATATAGCGGA
TTTGAA back to topCoding sequence (CDS) from alignment at scaffold_32:76557..78662+ >mRNA_9792 ID=mRNA_9792|Name=jgi.p|Nanoce1779_2|673890|organism=Nannochloropsis oceanica|type=CDS|length=4128bp|location=Sequence derived from alignment at scaffold_32:76557..78662+ (Nannochloropsis oceanica)
ATGTTTCGCCAATCTGCCCTCCTCTTTGTGGCCCTCCTCTGTATGGCAGA
TGCCCAGTTCGAGGCCCTGACCGCGAACAAGAACAAGACGGGCAACAAAC
ACCCGAAAGGCGCTCACAACGATAAGACGAATCTGCGCAAGGTGACTGGC
TTCAATCTCTGCACCCAGGAGTACGATGCCTACATTGGCGGGACAGGTGT
CGCTGGTACGGGCGCATTTTCGTACCCCGTCTACCCTGGGGATTGTGCTG
AGGTAGACGACATGACCGAGGAAATCGGCTCCTTGAGCGCCACATGCTCA
AACAACCCGTACGAGGGCGTGACCTTCACCCTCACTCGCCAAGCAGTGGG
ACGTGCTGCACTTCTGGATGACATTAGATCGCCTGGCACCAACTTCAACC
CAACTCCGCCTAATCAAGGAAATTTCGTCCAAGACTGGACTCCCCTTGAA
ATTGGTGAAACTACCACTACTGCACAGGTGCAGGCATCTGTGGATCAATT
CTGCGTGGATCAACAAGGAACCAAGTTTGCGCCTTTCAGTTCCAAGTGCT
CCGCCGAGCTCCGCCTTAGCGGCGATAACCGCAAGAATAAGCATCCAGGG
AGCATCTTATCTTTCGACTTCACGACCAACACGACTTTAGTCCCCGCTGG
CGGCACCTACACATCCATCACTCAATATGGAATGGGCGGTGTTTGGACGA
CTAAAACTGCAGGCACAGGTGGAGGATTTTCAGTATCGTTCGCATTTGTT
GACGTTGTAGAGCTCTTCGCTTACCAGGTGATCGACACTGTCACGTGCGT
TGCCCGGCCTAACACGATTGACACGACGTTCAGTAAGATCTATGGTGGAA
GCGGCCGCTTTGAGAAGTACCCCGCCTCCAAGGTGGCGTCGGTGGAGCTG
GATACGATTCTGATTTTTTCTCCCGATGACGCAGCTAATCCTGAGAACAC
GTTCGAGACTGAAAGCCAGGTATGGAACACCCAGCTGGAAGTTAATTACG
CGAAGAAGTACCTCGATTCCAGCATGCTTTAAATGTTTCGCCAATCTGCC
CTCCTCTTTGTGGCCCTCCTCTGTATGGCAGATGCCCAGTTCGAGGCCCT
GACCGCGAACAAGAACAAGACGGGCAACAAACACCCGAAAGGCGCTCACA
ACGATAAGACGAATCTGCGCAAGGTGACTGGCTTCAATCTCTGCACCCAG
GAGTACGATGCCTACATTGGCGGGACAGGTGTCGCTGGTACGGGCGCATT
TTCGTACCCCGTCTACCCTGGGGATTGTGCTGAGGTAGACGACATGACCG
AGGAAATCGGCTCCTTGAGCGCCACATGCTCAAACAACCCGTACGAGGGC
GTGACCTTCACCCTCACTCGCCAAGCAGTGGGACGTGCTGCACTTCTGGA
TGACATTAGATCGCCTGGCACCAACTTCAACCCAACTCCGCCTAATCAAG
GAAATTTCGTCCAAGACTGGACTCCCCTTGAAATTGGTGAAACTACCACT
ACTGCACAGGTGCAGGCATCTGTGGATCAATTCTGCGTGGATCAACAAGG
AACCAAGTTTGCGCCTTTCAGTTCCAAGTGCTCCGCCGAGCTCCGCCTTA
GCGGCGATAACCGCAAGAATAAGCATCCAGGGAGCATCTTATCTTTCGAC
TTCACGACCAACACGACTTTAGTCCCCGCTGGCGGCACCTACACATCCAT
CACTCAATATGGAATGGGCGGTGTTTGGACGACTAAAACTGCAGGCACAG
GTGGAGGATTTTCAGTATCGTTCGCATTTGTTGACGTTGTAGAGCTCTTC
GCTTACCAGGTGATCGACACTGTCACGTGCGTTGCCCGGCCTAACACGAT
TGACACGACGTTCAGTAAGATCTATGGTGGAAGCGGCCGCTTTGAGAAGT
ACCCCGCCTCCAAGGTGGCGTCGGTGGAGCTGGATACGATTCTGATTTTT
TCTCCCGATGACGCAGCTAATCCTGAGAACACGTTCGAGACTGAAAGCCA
GGTATGGAACACCCAGCTGGAAGTTAATTACGCGAAGAAGTACCTCGATT
CCAGCATGCTTTAAATGTTTCGCCAATCTGCCCTCCTCTTTGTGGCCCTC
CTCTGTATGGCAGATGCCCAGTTCGAGGCCCTGACCGCGAACAAGAACAA
GACGGGCAACAAACACCCGAAAGGCGCTCACAACGATAAGACGAATCTGC
GCAAGGTGACTGGCTTCAATCTCTGCACCCAGGAGTACGATGCCTACATT
GGCGGGACAGGTGTCGCTGGTACGGGCGCATTTTCGTACCCCGTCTACCC
TGGGGATTGTGCTGAGGTAGACGACATGACCGAGGAAATCGGCTCCTTGA
GCGCCACATGCTCAAACAACCCGTACGAGGGCGTGACCTTCACCCTCACT
CGCCAAGCAGTGGGACGTGCTGCACTTCTGGATGACATTAGATCGCCTGG
CACCAACTTCAACCCAACTCCGCCTAATCAAGGAAATTTCGTCCAAGACT
GGACTCCCCTTGAAATTGGTGAAACTACCACTACTGCACAGGTGCAGGCA
TCTGTGGATCAATTCTGCGTGGATCAACAAGGAACCAAGTTTGCGCCTTT
CAGTTCCAAGTGCTCCGCCGAGCTCCGCCTTAGCGGCGATAACCGCAAGA
ATAAGCATCCAGGGAGCATCTTATCTTTCGACTTCACGACCAACACGACT
TTAGTCCCCGCTGGCGGCACCTACACATCCATCACTCAATATGGAATGGG
CGGTGTTTGGACGACTAAAACTGCAGGCACAGGTGGAGGATTTTCAGTAT
CGTTCGCATTTGTTGACGTTGTAGAGCTCTTCGCTTACCAGGTGATCGAC
ACTGTCACGTGCGTTGCCCGGCCTAACACGATTGACACGACGTTCAGTAA
GATCTATGGTGGAAGCGGCCGCTTTGAGAAGTACCCCGCCTCCAAGGTGG
CGTCGGTGGAGCTGGATACGATTCTGATTTTTTCTCCCGATGACGCAGCT
AATCCTGAGAACACGTTCGAGACTGAAAGCCAGGTATGGAACACCCAGCT
GGAAGTTAATTACGCGAAGAAGTACCTCGATTCCAGCATGCTTTAAATGT
TTCGCCAATCTGCCCTCCTCTTTGTGGCCCTCCTCTGTATGGCAGATGCC
CAGTTCGAGGCCCTGACCGCGAACAAGAACAAGACGGGCAACAAACACCC
GAAAGGCGCTCACAACGATAAGACGAATCTGCGCAAGGTGACTGGCTTCA
ATCTCTGCACCCAGGAGTACGATGCCTACATTGGCGGGACAGGTGTCGCT
GGTACGGGCGCATTTTCGTACCCCGTCTACCCTGGGGATTGTGCTGAGGT
AGACGACATGACCGAGGAAATCGGCTCCTTGAGCGCCACATGCTCAAACA
ACCCGTACGAGGGCGTGACCTTCACCCTCACTCGCCAAGCAGTGGGACGT
GCTGCACTTCTGGATGACATTAGATCGCCTGGCACCAACTTCAACCCAAC
TCCGCCTAATCAAGGAAATTTCGTCCAAGACTGGACTCCCCTTGAAATTG
GTGAAACTACCACTACTGCACAGGTGCAGGCATCTGTGGATCAATTCTGC
GTGGATCAACAAGGAACCAAGTTTGCGCCTTTCAGTTCCAAGTGCTCCGC
CGAGCTCCGCCTTAGCGGCGATAACCGCAAGAATAAGCATCCAGGGAGCA
TCTTATCTTTCGACTTCACGACCAACACGACTTTAGTCCCCGCTGGCGGC
ACCTACACATCCATCACTCAATATGGAATGGGCGGTGTTTGGACGACTAA
AACTGCAGGCACAGGTGGAGGATTTTCAGTATCGTTCGCATTTGTTGACG
TTGTAGAGCTCTTCGCTTACCAGGTGATCGACACTGTCACGTGCGTTGCC
CGGCCTAACACGATTGACACGACGTTCAGTAAGATCTATGGTGGAAGCGG
CCGCTTTGAGAAGTACCCCGCCTCCAAGGTGGCGTCGGTGGAGCTGGATA
CGATTCTGATTTTTTCTCCCGATGACGCAGCTAATCCTGAGAACACGTTC
GAGACTGAAAGCCAGGTATGGAACACCCAGCTGGAAGTTAATTACGCGAA
GAAGTACCTCGATTCCAGCATGCTTTAA back to top
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