jgi.p|Nanoce1779_2|605487, mRNA_9791 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|605487
Unique NamemRNA_9791
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length335
Alignment locationscaffold_32:67471..67805 -

Link to JBrowse

Properties
Property NameValue
TranscriptId605573
TrackFilteredModels2
ProteinId605487
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_32supercontigscaffold_32:67471..67805 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|605487gene_9791Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|605487mRNA_9791-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9791CDS_9791Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9791 ID=mRNA_9791|Name=jgi.p|Nanoce1779_2|605487|organism=Nannochloropsis oceanica|type=mRNA|length=335bp
CCTCTCCACGCCAAAAGCTTTCCGCTTCCCATTGATAGTAGAAAGGGACA
ACCGTCGACGGGATTTCGCGCTGCTATTGGAGCTGGCGGTGATGCTACTG
TTTATGGTGCTGTTGACACTAGCGTTGTCCTCCTGCTCCATCACCACCAC
ATCAGAGTCCTCCTCCTCTATTCCGTCCTCCTCCTCCATTCCGTCAGCTT
GCTGCATCCCGTCAGCTTGTTCATTTTGGTCGTCAGGGACGGCAGATTCG
TCATATTGGCACGGTAAGGCGTTGGCTATAGCGACGGAGGCAGCAGCGAC
ATCTTGTGTTGCCATTCTTTAGGAGTGCTGATGTT
back to top

protein sequence of jgi.p|Nanoce1779_2|605487

>mRNA_9791-protein ID=mRNA_9791-protein|Name=jgi.p|Nanoce1779_2|605487|organism=Nannochloropsis oceanica|type=polypeptide|length=94bp
ERDNRRRDFALLLELAVMLLFMVLLTLALSSCSITTTSESSSSIPSSSSI
PSACCIPSACSFWSSGTADSSYWHGKALAIATEAAATSCVAIL*
back to top

mRNA from alignment at scaffold_32:67471..67805-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9791 ID=mRNA_9791|Name=jgi.p|Nanoce1779_2|605487|organism=Nannochloropsis oceanica|type=mRNA|length=335bp|location=Sequence derived from alignment at scaffold_32:67471..67805- (Nannochloropsis oceanica)
CCTCTCCACGCCAAAAGCTTTCCGCTTCCCATTGATAGTAGAAAGGGACA
ACCGTCGACGGGATTTCGCGCTGCTATTGGAGCTGGCGGTGATGCTACTG
TTTATGGTGCTGTTGACACTAGCGTTGTCCTCCTGCTCCATCACCACCAC
ATCAGAGTCCTCCTCCTCTATTCCGTCCTCCTCCTCCATTCCGTCAGCTT
GCTGCATCCCGTCAGCTTGTTCATTTTGGTCGTCAGGGACGGCAGATTCG
TCATATTGGCACGGTAAGGCGTTGGCTATAGCGACGGAGGCAGCAGCGAC
ATCTTGTGTTGCCATTCTTTAGGAGTGCTGATGTT
back to top

Coding sequence (CDS) from alignment at scaffold_32:67471..67805-

>mRNA_9791 ID=mRNA_9791|Name=jgi.p|Nanoce1779_2|605487|organism=Nannochloropsis oceanica|type=CDS|length=282bp|location=Sequence derived from alignment at scaffold_32:67471..67805- (Nannochloropsis oceanica)
GAAAGGGACAACCGTCGACGGGATTTCGCGCTGCTATTGGAGCTGGCGGT
GATGCTACTGTTTATGGTGCTGTTGACACTAGCGTTGTCCTCCTGCTCCA
TCACCACCACATCAGAGTCCTCCTCCTCTATTCCGTCCTCCTCCTCCATT
CCGTCAGCTTGCTGCATCCCGTCAGCTTGTTCATTTTGGTCGTCAGGGAC
GGCAGATTCGTCATATTGGCACGGTAAGGCGTTGGCTATAGCGACGGAGG
CAGCAGCGACATCTTGTGTTGCCATTCTTTAG
back to top
Synonyms
Publications