jgi.p|Nanoce1779_2|605485, mRNA_9790 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|605485
Unique NamemRNA_9790
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1132
Alignment locationscaffold_32:65559..66860 -

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Properties
Property NameValue
TranscriptId605571
TrackFilteredModels2
ProteinId605485
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_32supercontigscaffold_32:65559..66860 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|605485gene_9790Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|605485mRNA_9790-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9790CDS_9790Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9790 ID=mRNA_9790|Name=jgi.p|Nanoce1779_2|605485|organism=Nannochloropsis oceanica|type=mRNA|length=1132bp
ATCGCTGCAATATGGCCATAATCTTGACGCGAAATGTCGAGGTATATAAT
GGGAACCAATGCCTGGAAAGTAATTGTGACACGTAAATTTTACGTGATCA
TTTATGCAATTTCTTTCATCTTGATCTCTTTAAACCTACAACTACAACGC
CACACCTTCTCGAGGGAGAAAAACGACATTGTCATGGCTCACTTGAAAGA
AAAACGCACCACGGATAGCCGATTGAATGCATGGACCGATAAAATATCCT
GTCCTGTCACTCAATATACTATTTGGGAAGAGTGGAGGCAGTGTCAATCA
ATGGCCTTATCAAAAGTATCAAACAGCGATACATTCGATGAGTTCATTGT
ACGGAATGGGGCTCGCCTTCCTTGGAATTTGCATTCCAACCAAACTGCCG
TGCTACTTGAATTTCGAGAGATTCAGTCAAGAATGAGTTTAATCATCAAC
AATATGATAATGAATTTACCCGTACTCTGGCGAGTACAAGTACTCGGTGG
GGACGCTGTGTGCCTCTTGATGCGCCGTCTCTTTCCACATGAAATAGCGG
CAGGTAAAGTTGTGGTGACTCATATCGACAAGGACAATGTAGAGCAGAGC
AGGATTAGCGAGATATTGACAGATCCCACCTTTTACAATCATCTGCTGGG
AGACACTTGGCTTTTCTTCCAGGTAACAGTCAAATATCGATTGCTGATGA
TCGCAAAATTCGCTCACTAACTGAATTTTCCCCGTTCCCCCAAGTTGGAC
TCCCTCATTTGCTCCAAGCAGCGGATATTGCTTCAAACATTTCTCAACAG
GGATTACGGCTGGTGGGGAGCACCATGGAAGTAAGATGCAGCTATGATGT
AGCTTGAAGGCAATCAGCTATGACACTTGTTTCAAAATGCTAACCACTCT
ACCCCTTTTGCACATATGACAGCTTCTGGGGCAGAGTTCCTCGAATATGT
GGCAATGGAGGCTTCTCGCTCCGTAAAAAACAGTTTGTTAATACCATTCT
GTCACGCTTCACATGGAACGGAGAAAGCGAAGACATGTTCTTCTGTCATG
CTGCCGCAGAAATTTTTGATGAGTTGCCACAATACATACAACCAGCACCT
ATGAGTGAAGAAGAAGAGTTCTGTGCGGAAAC
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protein sequence of jgi.p|Nanoce1779_2|605485

>mRNA_9790-protein ID=mRNA_9790-protein|Name=jgi.p|Nanoce1779_2|605485|organism=Nannochloropsis oceanica|type=polypeptide|length=224bp
MGTNAWKVIVTRKFYVIIYAISFILISLNLQLQRHTFSREKNDIVMAHLK
EKRTTDSRLNAWTDKISCPVTQYTIWEEWRQCQSMALSKVSNSDTFDEFI
VRNGARLPWNLHSNQTAVLLEFREIQSRMSLIINNMIMNLPVLWRVQVLG
GDAVCLLMRRLFPHEIAAGKVVVTHIDKDNVEQSRISEILTDPTFYNHLL
GDTWLFFQVTVKYRLLMIAKFAH*
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mRNA from alignment at scaffold_32:65559..66860-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9790 ID=mRNA_9790|Name=jgi.p|Nanoce1779_2|605485|organism=Nannochloropsis oceanica|type=mRNA|length=1302bp|location=Sequence derived from alignment at scaffold_32:65559..66860- (Nannochloropsis oceanica)
ATCGCTGCAATATGGCCATAATCTTGACGCGAAATGTCGAGGTATATAAT
GGGAACCAATGCCTGGAAAGTAATTGTGACACGTAAATTTTACGTGATCA
TTTATGCAATTTCTTTCATCTTGATCTCTTTAAACCTACAACTACAACGC
CACACCTTCTCGAGGGAGAAAAACGACATTGTCATGGCTCACTTGAAAGA
AAAACGCACCACGGATAGCCGATTGAATGCATGGACCGATAAAATATCCT
GTCCTGTCACTCAATATACTATTTGGGAAGAGTGGAGGCAGTGTCAATCA
ATGGCCTTATCAAAAGTATCAAACAGCGATACATTCGATGAGTTCATTGT
ACGGAATGGGGCTCGCCTTCCTTGGAATTTGCATTCCAACCAAACTGCCG
TGCTACTTGAATTTCGAGAGATTCAGTCAAGAATGAGTTTAATCATCAAC
AATATGATAATGAATTTACCCGTACTCTGGCGAGTACAAGTACTCGGTGG
GGACGCTGTGTGCCTCTTGATGCGCCGTCTCTTTCCACATGAAATAGCGG
CAGGTAAAGTTGTGGTGACTCATATCGACAAGGACAATGTAGAGCAGGTA
CGACCTATTATTCTGTAGGCTTTATTTTTTAGGGTCCGATTGTACTTTGA
CATTCCTCACTTTCCCCCTTCTTGGCTGCGTAGAGCAGGATTAGCGAGAT
ATTGACAGATCCCACCTTTTACAATCATCTGCTGGGAGACACTTGGCTTT
TCTTCCAGGTAACAGTCAAATATCGATTGCTGATGATCGCAAAATTCGCT
CACTAACTGAATTTTCCCCGTTCCCCCAAGTTGGACTCCCTCATTTGCTC
CAAGCAGCGGATATTGCTTCAAACATTTCTCAACAGGGATTACGGCTGGT
GGGGAGCACCATGGAAGTAAGATGCAGCTATGATGTAGCTTGAAGGCAAT
CAGCTATGACACTTGTTTCAAAATGCTAACCACTCTACCCCTTTTGCACA
TATGACAGCTTCTGGGGCAGAGTTCCTCGAATATGTGGCAATGGAGGCTT
CTCGCTCCGTAAAAAACAGTTTGTTAATACCATTCTGTCACGGTAAGAGT
TGCATGGTATTTTTTTTTCATAAATTGTCTTATTTCAGATATTAAACTCT
TGATTTATACCTAATGATATAAAAAGCTTCACATGGAACGGAGAAAGCGA
AGACATGTTCTTCTGTCATGCTGCCGCAGAAATTTTTGATGAGTTGCCAC
AATACATACAACCAGCACCTATGAGTGAAGAAGAAGAGTTCTGTGCGGAA
AC
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Coding sequence (CDS) from alignment at scaffold_32:65559..66860-

>mRNA_9790 ID=mRNA_9790|Name=jgi.p|Nanoce1779_2|605485|organism=Nannochloropsis oceanica|type=CDS|length=1344bp|location=Sequence derived from alignment at scaffold_32:65559..66860- (Nannochloropsis oceanica)
AGCAGGATTAGCGAGATATTGACAGATCCCACCTTTTACAATCATCTGCT
GGGAGACACTTGGCTTTTCTTCCAGGTAACAGTCAAATATCGATTGCTGA
TGATCGCAAAATTCGCTCACTAAATGGGAACCAATGCCTGGAAAGTAATT
GTGACACGTAAATTTTACGTGATCATTTATGCAATTTCTTTCATCTTGAT
CTCTTTAAACCTACAACTACAACGCCACACCTTCTCGAGGGAGAAAAACG
ACATTGTCATGGCTCACTTGAAAGAAAAACGCACCACGGATAGCCGATTG
AATGCATGGACCGATAAAATATCCTGTCCTGTCACTCAATATACTATTTG
GGAAGAGTGGAGGCAGTGTCAATCAATGGCCTTATCAAAAGTATCAAACA
GCGATACATTCGATGAGTTCATTGTACGGAATGGGGCTCGCCTTCCTTGG
AATTTGCATTCCAACCAAACTGCCGTGCTACTTGAATTTCGAGAGATTCA
GTCAAGAATGAGTTTAATCATCAACAATATGATAATGAATTTACCCGTAC
TCTGGCGAGTACAAGTACTCGGTGGGGACGCTGTGTGCCTCTTGATGCGC
CGTCTCTTTCCACATGAAATAGCGGCAGGTAAAGTTGTGGTGACTCATAT
CGACAAGGACAATGTAGAGCAGAGCAGGATTAGCGAGATATTGACAGATC
CCACCTTTTACAATCATCTGCTGGGAGACACTTGGCTTTTCTTCCAGGTA
ACAGTCAAATATCGATTGCTGATGATCGCAAAATTCGCTCACTAAATGGG
AACCAATGCCTGGAAAGTAATTGTGACACGTAAATTTTACGTGATCATTT
ATGCAATTTCTTTCATCTTGATCTCTTTAAACCTACAACTACAACGCCAC
ACCTTCTCGAGGGAGAAAAACGACATTGTCATGGCTCACTTGAAAGAAAA
ACGCACCACGGATAGCCGATTGAATGCATGGACCGATAAAATATCCTGTC
CTGTCACTCAATATACTATTTGGGAAGAGTGGAGGCAGTGTCAATCAATG
GCCTTATCAAAAGTATCAAACAGCGATACATTCGATGAGTTCATTGTACG
GAATGGGGCTCGCCTTCCTTGGAATTTGCATTCCAACCAAACTGCCGTGC
TACTTGAATTTCGAGAGATTCAGTCAAGAATGAGTTTAATCATCAACAAT
ATGATAATGAATTTACCCGTACTCTGGCGAGTACAAGTACTCGGTGGGGA
CGCTGTGTGCCTCTTGATGCGCCGTCTCTTTCCACATGAAATAGCGGCAG
GTAAAGTTGTGGTGACTCATATCGACAAGGACAATGTAGAGCAG
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Synonyms
Publications