jgi.p|Nanoce1779_2|574878, mRNA_979 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|574878
Unique NamemRNA_979
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1559
Alignment locationscaffold_2:912885..914573 -

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Properties
Property NameValue
TranscriptId574964
TrackFilteredModels2
ProteinId574878
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:912885..914573 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|574878gene_979Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|574878mRNA_979-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_979CDS_979Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_979 ID=mRNA_979|Name=jgi.p|Nanoce1779_2|574878|organism=Nannochloropsis oceanica|type=mRNA|length=1559bp
CAACAGAGCCAGCCTACGGTAGAGCCATGCCGATGCGGAGCGAGAGTCCA
TCATCCTCAGGCCGGGCGCTTGGCATTAACGAACTTGCCTTGCTCCTGCT
TTTGCTGTCAAGGGTCGTCGTAGAGGGATTCTTCTTCACAGGGCCGCGCA
GTGTAGACCATCTTAAAGACGTACGAGGGTTGCAGCCGCCCCGCCCGTTT
CTACTCCAGACGTCTACGAGCCTGGGAGGTGCCTCTGCTACGTCCGTCGA
TGGGTAAGCCCCCTTTTCTTGTCTTGTTTTCGTAGTCTTTTCTGATGCCT
TCCGCTCACTCGCTCACATTTCACACTATCTGTTACAAATCACATACATG
GAGGCTGTTGCGGGACGAGAGTGCCGACGTTACCAATGGGGACAGTCGCA
GCATTAGTGTAGCGGGACCCACGACAGAGGGCAAGTGCAGTGGCAGGTAC
GTTTTTAGGCATAGAAGGCATTTTTCACATTCCCTCCCCTCCTCCCTTCC
CTCTATTTAATCGCTACTCAAACGCCCATCCTCTCAGAATCCTCCAAGTC
ATCACCGATATCGATGATACTGTCAAGTCCAGCGGCGGGCTGCGTCTCCT
CGGGGTAGCCTTGGGAGGGATTGACACCCAATACAAACGCGGACAGTATT
ACCCAGGTGCCTTCCAGTTTGCCCTGGAGCTCTCTCGTTTCGGCGTACCT
GAAGGTCGAGATCCTGCACGTGTTGCTGTACTGACAGCGAGAGCCCGTGA
ATTCAAATTCGCCCTCGAACTCAAACCCTCCCACAAAGTTTGCCGGACAT
ATGCCGCTGCTGGGGTTGACAATGGGGTGGATGGGTGGGGGGTCGGTACG
GTGCTGTATGGTAGTGTCAAGGAGTGGGTGTGTCAGGGTAGGAAGGGTTT
AAGGAAGTTTCGCAATTTCGAGGCGTTGCGGAGAGAGGATCGCTTTGATT
TGACGGATTATGTGTTTGTTGGAGATACGGGGGAGTTGGATGTGCAGGCG
GGTGAGAGCATGATCAGGTAGGTGAGAAGGGGAGGGACGGAGAGGGGGAG
GGAGGGAGTGAGTGAGTGAGGGCTGTTTGGGTGGGTGGGTGGAGGAATGA
GAGACGTTTGGTATTTCGTGTGTGCGGCCGTAAAATTTATGTCACATGTA
TCAGGTACGTCATGGCCTGATCAACTCACACACCTACACCCTCCTTCCCT
CCGTCAGGAAGTACCCCACCCGTATCAAGGCCCTCTTCATGCACTACGTC
TCTGAAGCCCGTCCCTCCCCCCCTCCTCCCCGCGATCGCTCCCTGCTTGA
TGTCCCCGTGATTTATTTTCAGACCTATGTGGGCGCTGCTGTGAAAGCTG
CCGGCCTGGGTTTGCTGGACAGAAGAGGGGTGGAGGCAGTAATAGCTCGA
GCCCTTGATGAATTGGAGGGAGGAGGGAAAAAGGGAGAGAAAAAAGGAGG
GAGAAAGGCTACGCCGGAACAGCTGGCCGATCTGATGGCAGATATTGATC
TAGCAAAGAGGACGGTGTTAATGACCAAGGAGGAGGACGGGGGTACGGGC
AAAGGAAAG
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protein sequence of jgi.p|Nanoce1779_2|574878

>mRNA_979-protein ID=mRNA_979-protein|Name=jgi.p|Nanoce1779_2|574878|organism=Nannochloropsis oceanica|type=polypeptide|length=77bp
MPMRSESPSSSGRALGINELALLLLLLSRVVVEGFFFTGPRSVDHLKDVR
GLQPPRPFLLQTSTSLGGASATSVDG*
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mRNA from alignment at scaffold_2:912885..914573-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_979 ID=mRNA_979|Name=jgi.p|Nanoce1779_2|574878|organism=Nannochloropsis oceanica|type=mRNA|length=1689bp|location=Sequence derived from alignment at scaffold_2:912885..914573- (Nannochloropsis oceanica)
CAACAGAGCCAGCCTACGGTAGAGCCATGCCGATGCGGAGCGAGAGTCCA
TCATCCTCAGGCCGGGCGCTTGGCATTAACGAACTTGCCTTGCTCCTGCT
TTTGCTGTCAAGGGTCGTCGTAGAGGGATTCTTCTTCACAGGGCCGCGCA
GTGTAGACCATCTTAAAGACGTACGAGGGTTGCAGCCGCCCCGCCCGTTT
CTACTCCAGACGTCTACGAGCCTGGGAGGTGCCTCTGCTACGTCCGTCGA
TGGGTAAGCCCCCTTTTCTTGTCTTGTTTTCGTAGTCTTTTCTGATGCCT
TCCGCTCACTCGCTCACATTTCACACTATCTGTTACAAATCACATACATG
GAGGCTGTTGCGGGACGAGAGTGCCGACGTTACCAATGGGGACAGTCGCA
GCATTAGTGTAGCGGGACCCACGACAGAGGGCAAGTGCAGTGGCAGGTAC
GTTTTTAGGCATAGAAGGCATTTTTCACATTCCCTCCCCTCCTCCCTTCC
CTCTATTTAATCGCTACTCAAACGCCCATCCTCTCAGAATCCTCCAAGTC
ATCACCGATATCGATGATACTGTCAAGTCCAGCGGCGGGCTGCGTCTCCT
CGGGGTAGCCTTGGGAGGGATTGACACCCAATACAAACGCGGACAGTATT
ACCCAGGTGCCTTCCAGTTTGCCCTGGAGCTCTCTCGTTTCGGCGTACCT
GAAGGTCGAGATCCTGCACGTGTTGCTGTACTGACAGCGAGGTGGGTGCT
TCAGCCATCTCTCCCACCTACACTTTCCTCCTCTCTCTTTGTACGAGCCT
CTGGAGACATTCCTCTATCAAGCACCCTCACTTAAATTCCTCTTTCTCCC
CTCCCTAAAAACCAAACACAGAGCCCGTGAATTCAAATTCGCCCTCGAAC
TCAAACCCTCCCACAAAGTTTGCCGGACATATGCCGCTGCTGGGGTTGAC
AATGGGGTGGATGGGTGGGGGGTCGGTACGGTGCTGTATGGTAGTGTCAA
GGAGTGGGTGTGTCAGGGTAGGAAGGGTTTAAGGAAGTTTCGCAATTTCG
AGGCGTTGCGGAGAGAGGATCGCTTTGATTTGACGGATTATGTGTTTGTT
GGAGATACGGGGGAGTTGGATGTGCAGGCGGGTGAGAGCATGATCAGGTA
GGTGAGAAGGGGAGGGACGGAGAGGGGGAGGGAGGGAGTGAGTGAGTGAG
GGCTGTTTGGGTGGGTGGGTGGAGGAATGAGAGACGTTTGGTATTTCGTG
TGTGCGGCCGTAAAATTTATGTCACATGTATCAGGTACGTCATGGCCTGA
TCAACTCACACACCTACACCCTCCTTCCCTCCGTCAGGAAGTACCCCACC
CGTATCAAGGCCCTCTTCATGCACTACGTCTCTGAAGCCCGTCCCTCCCC
CCCTCCTCCCCGCGATCGCTCCCTGCTTGATGTCCCCGTGATTTATTTTC
AGACCTATGTGGGCGCTGCTGTGAAAGCTGCCGGCCTGGGTTTGCTGGAC
AGAAGAGGGGTGGAGGCAGTAATAGCTCGAGCCCTTGATGAATTGGAGGG
AGGAGGGAAAAAGGGAGAGAAAAAAGGAGGGAGAAAGGCTACGCCGGAAC
AGCTGGCCGATCTGATGGCAGATATTGATCTAGCAAAGAGGACGGTGTTA
ATGACCAAGGAGGAGGACGGGGGTACGGGCAAAGGAAAG
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Coding sequence (CDS) from alignment at scaffold_2:912885..914573-

>mRNA_979 ID=mRNA_979|Name=jgi.p|Nanoce1779_2|574878|organism=Nannochloropsis oceanica|type=CDS|length=231bp|location=Sequence derived from alignment at scaffold_2:912885..914573- (Nannochloropsis oceanica)
ATGCCGATGCGGAGCGAGAGTCCATCATCCTCAGGCCGGGCGCTTGGCAT
TAACGAACTTGCCTTGCTCCTGCTTTTGCTGTCAAGGGTCGTCGTAGAGG
GATTCTTCTTCACAGGGCCGCGCAGTGTAGACCATCTTAAAGACGTACGA
GGGTTGCAGCCGCCCCGCCCGTTTCTACTCCAGACGTCTACGAGCCTGGG
AGGTGCCTCTGCTACGTCCGTCGATGGGTAA
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Synonyms
Publications