jgi.p|Nanoce1779_2|605446, mRNA_9787 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|605446
Unique NamemRNA_9787
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1426
Alignment locationscaffold_32:55070..57249 +

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Properties
Property NameValue
TranscriptId605532
TrackFilteredModels2
ProteinId605446
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_32supercontigscaffold_32:55070..57249 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|605446gene_9787Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|605446mRNA_9787-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9787CDS_9787Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9787 ID=mRNA_9787|Name=jgi.p|Nanoce1779_2|605446|organism=Nannochloropsis oceanica|type=mRNA|length=1426bp
TGCATTTCGATTTCAAAGAGAAAATTTATTAATTTCCTTGATCTCCAACT
TCTCGTCTCACATTCAATGAAAGATTAAGAATGGAAACATGGCAAGCGAC
TTTAGGCCTCCGACCCTCATCTTCTATGTCACACACTGTCCTGCTACTAC
TGATCGGAGCATTTTTATATTGCTGCTCAAAGGAAATTATGCCTCTCAAG
GCATGGAGAAAGGCATCCATTAGTCCCCACGAGTATAAATTGAAGGCGGA
CCCTTCTCCTCTCGAACTATGGACCCTCTTTCCTCAAGGGTATGATACCG
AAACTGCAGTGGTCCAGCAACGAATCAAAGAGAGCCAGAATCCGCCGGAC
TGCGAAAGTGGAAAATACTTTTCGAACAACCTCAACAATTACGGCATGAG
TTCTGACATTCATACGCCAGGTAAACCGCTTTCACGATGCCAGGTCTGTA
TTTTTGCATATACTCTTTTACTTGTACCTTCAATCAATGTTTTCTCTGAA
CCACAGCCTATAACAGTACATGGCAAACAGCATAGATGTCGTCAGCAAAC
GGTATAATGATACTTCACGTGACCTTGTGGATTACCAGCTCCTGCTGGCC
CCGAGCTGTTTTGATTTGGACAAAGGCCTTATTCCCAATTTGTCCGACTG
GCCGAAAAAAGGCATCTCTTAGTGGAGAGCACAAACAACAAGGTATTTAG
CACGGCCTTCTGACAGCCTTTTTGCTTGGGCAAGACACTATTTTGTGCAA
GACTTGATCAGACATCCATCTCCTACTAGTTGGAACGCCTCCAGGCAAAC
TCCCCCCGATAATGCAATATGTATCCATATTCGCCATGGCGATAAATTCC
AAGAGATGACGCTACATCCTATGGAAGAATATCTTGAGGCTGCTGCGAGG
CTAGCTGGGAACGACACTAGCTTGTCTCTAAGCCAAAGTATATTTCTGTT
CACTGATGATCTCAACATAATCGACGATATCGCCCGCGGTAGTTATGACC
ACATGAATTTTACTTTCTACTACACAAGGTAATAGTTTTTTCAATCGAGA
ATCAAATTTACTCAGACAAATACAAATTATTCTTTCCTCTGTTGTGGTCT
ACAGGTACGAGAGGCGATCTGACGACATTAGTCCTGGTGGAATCGCTAGA
AATATAGGTCCCGGATTACTCGACAGTATTTCTGTGGCCAACTTGATATT
AGGCGCGCATCCACACTGCAAAAATTTTGTGCAGACTACTGGTTTGAACT
GAAATAGATTGATCGATGAAATACGAAAAACAGACGGTGAAAGGAAAAAC
GCTGCTTCTATAGATTTGGAGCCGGGAGAATGGTGAAAAGGATGATGGGG
GGAAAGTCGTTGTAAGATAGACCACTAGTGGACACTGGCAATTATCACTG
ATACTGCGCCTTCTTCCTCTATTTCT
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protein sequence of jgi.p|Nanoce1779_2|605446

>mRNA_9787-protein ID=mRNA_9787-protein|Name=jgi.p|Nanoce1779_2|605446|organism=Nannochloropsis oceanica|type=polypeptide|length=159bp
METWQATLGLRPSSSMSHTVLLLLIGAFLYCCSKEIMPLKAWRKASISPH
EYKLKADPSPLELWTLFPQGYDTETAVVQQRIKESQNPPDCESGKYFSNN
LNNYGMSSDIHTPGKPLSRCQVCIFAYTLLLVPSINVFSEPQPITVHGKQ
HRCRQQTV*
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mRNA from alignment at scaffold_32:55070..57249+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9787 ID=mRNA_9787|Name=jgi.p|Nanoce1779_2|605446|organism=Nannochloropsis oceanica|type=mRNA|length=2180bp|location=Sequence derived from alignment at scaffold_32:55070..57249+ (Nannochloropsis oceanica)
TGCATTTCGATTTCAAAGAGAAAATTTATTAATTTCCTTGATCTCCAACT
TCTCGTCTCACATTCAATGAAAGATTAAGAATGGAAACATGGCAAGCGAC
TTTAGGCCTCCGACCCTCATCTTCTATGTCACACACTGTCCTGCTACTAC
TGATCGGAGCATTTTTATATTGCTGCTCAAAGGAAATTATGCCTCTCAAG
GCATGGAGAAAGGCATCCATTAGTCCCCACGAGTATAAATTGAAGGCGGA
CCCTTCTCCTCTCGAACTATGGACCCTCTTTCCTCAAGGTAAGAAGATGT
GTCTAATGAATTGGTGTAGCGGACTTTAAGTCGAGTGACCAAGCACATTT
TCCATTTGCGCTTTAATATAGGGTATGATACCGAAACTGCAGTGGTCCAG
CAACGAATCAAAGAGAGCCAGAATCCGCCGGACTGCGAAAGTGGAAAATA
CTTTTCGAACAACCTCAACAATTACGGCATGAGTTCTGACATTCATACGC
CAGGTAAGTAGACAATATACCCATTTGAAAGAACAGAGTCATCGATAAAT
CAAATCTCTGGGGCACACACACAATCACAAGTCTTATGATTGGCTTTGCT
ATGCAGCACAATCGTACTCTGCTCTACCATCCGCAGACGTACGTGTTATG
GGAGGAGTCAATCGTCATTCAGTCGCGATTCAAACCATATTTCATATTTC
CTTCACCAAAAACAGCAACTGGCGATACACGTCTGAGCATGTTTGCCATG
AAATTTTGACTCCTGATTTTTTTTCAGACCGCTTTCACGATGCCAGGTCT
GTATTTTTGCATATACTCTTTTACTTGTACCTTCAATCAATGTTTTCTCT
GAACCACAGCCTATAACAGTACATGGCAAACAGCATAGATGTCGTCAGCA
AACGGTATAATGATACTTCACGTGACCTTGTGGATTACCAGCTCCTGCTG
GCCCCGAGCTGTTTTGATTTGGACAAAGGCCTTATTCCCAATTTGTCCGA
CTGGCCGAAAAAAGGCATCTCTTAGTGGAGAGCACAAACAACAAGGTAAT
CAAACGCAGCACGTCTTCATTACTTTCCTTCACCGATCTGTCTGTATCAG
GAATAAACTAATCCAAAATCTATGCGATTTATCATTTAGGTATTTAGCAC
GGCCTTCTGACAGCCTTTTTGCTTGGGCAAGACACTATTTTGTGCAAGAC
TTGATCAGGTGAGGTCGATTTCTCAATCTGACTCAAGATTGTTCAAGATA
TTGCTCTCAAGATTGTTCAAGATATTGCTCTTACAATTTGTCGTCAATTC
CTAGACATCCATCTCCTACTAGTTGGAACGCCTCCAGGCAAACTCCCCCC
GATAATGCAATATGTATCCATATTCGCCATGGCGATAAATTCCAAGAGAT
GACGTGAGAATGGCACGTGGGCTATTCTTGCTCTCTCTCTCTCGTTTCTC
TTTACCTATTGAGAGAACACCACGATGTGATATACATCCTACACGAATAG
GCTACATCCTATGGAAGAATATCTTGAGGCTGCTGCGAGGCTAGCTGGGA
ACGACACTAGCTTGTCTCTAAGCCAAAGTATATTTCTGTTCACTGATGAT
CTCAACATAATCGACGATATCGCCCGCGGTAGTTATGACCACATGAATTT
TACTTTCTACTACACAAGGTAATAGTTTTTTCAATCGAGAATCAAATTTA
CTCAGACAAATACAAATTATTCTTTCCTCTGTTGTGGTCTACAGGTACGA
GAGGCGATCTGACGACATTAGTCCTGGTGGAATCGCTAGAAATATAGGTC
CCGGATTACTCGACAGGTGAGCGTGTCTACAAGAAGCGGTCACATACACA
ATGGGCGACAAGAGGTATCACTAAGTCTCCGCTCCTTTCTCCTCCCCACC
CCTTCCCCTCTTTTCTTGTATTTGAAATAGTATTTCTGTGGCCAACTTGA
TATTAGGCGCGCATCCACACTGCAAAAATTTTGTGCAGACTACTGGTTTG
AACTGAAATAGATTGATCGATGAAATACGAAAAACAGACGGTGAAAGGAA
AAACGCTGCTTCTATAGATTTGGAGCCGGGAGAATGGTGAAAAGGATGAT
GGGGGGAAAGTCGTTGTAAGATAGACCACTAGTGGACACTGGCAATTATC
ACTGATACTGCGCCTTCTTCCTCTATTTCT
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Coding sequence (CDS) from alignment at scaffold_32:55070..57249+

>mRNA_9787 ID=mRNA_9787|Name=jgi.p|Nanoce1779_2|605446|organism=Nannochloropsis oceanica|type=CDS|length=1431bp|location=Sequence derived from alignment at scaffold_32:55070..57249+ (Nannochloropsis oceanica)
ATGGAAACATGGCAAGCGACTTTAGGCCTCCGACCCTCATCTTCTATGTC
ACACACTGTCCTGCTACTACTGATCGGAGCATTTTTATATTGCTGCTCAA
AGGAAATTATGCCTCTCAAGGCATGGAGAAAGGCATCCATTAGTCCCCAC
GAGTATAAATTGAAGGCGGACCCTTCTCCTCTCGAACTATGGACCCTCTT
TCCTCAAGGGTATGATACCGAAACTGCAGTGGTCCAGCAACGAATCAAAG
AGAGCCAGAATCCGCCGGACTGCGAAAGTGGAAAATACTTTTCGAACAAC
CTCAACAATTACGGCATGAGTTCTGACATTCATACGCCAGGTAAACCGCT
TTCACGATGCCAGGTCTGTATTTTTGCATATACTCTTTTACTTGTACCTT
CAATCAATGTTTTCTCTGAACCACAGCCTATAACAGTACATGGCAAACAG
CATAGATGTCGTCAGCAAACGGTATAAATGGAAACATGGCAAGCGACTTT
AGGCCTCCGACCCTCATCTTCTATGTCACACACTGTCCTGCTACTACTGA
TCGGAGCATTTTTATATTGCTGCTCAAAGGAAATTATGCCTCTCAAGGCA
TGGAGAAAGGCATCCATTAGTCCCCACGAGTATAAATTGAAGGCGGACCC
TTCTCCTCTCGAACTATGGACCCTCTTTCCTCAAGGGTATGATACCGAAA
CTGCAGTGGTCCAGCAACGAATCAAAGAGAGCCAGAATCCGCCGGACTGC
GAAAGTGGAAAATACTTTTCGAACAACCTCAACAATTACGGCATGAGTTC
TGACATTCATACGCCAGGTAAACCGCTTTCACGATGCCAGGTCTGTATTT
TTGCATATACTCTTTTACTTGTACCTTCAATCAATGTTTTCTCTGAACCA
CAGCCTATAACAGTACATGGCAAACAGCATAGATGTCGTCAGCAAACGGT
ATAAATGGAAACATGGCAAGCGACTTTAGGCCTCCGACCCTCATCTTCTA
TGTCACACACTGTCCTGCTACTACTGATCGGAGCATTTTTATATTGCTGC
TCAAAGGAAATTATGCCTCTCAAGGCATGGAGAAAGGCATCCATTAGTCC
CCACGAGTATAAATTGAAGGCGGACCCTTCTCCTCTCGAACTATGGACCC
TCTTTCCTCAAGGGTATGATACCGAAACTGCAGTGGTCCAGCAACGAATC
AAAGAGAGCCAGAATCCGCCGGACTGCGAAAGTGGAAAATACTTTTCGAA
CAACCTCAACAATTACGGCATGAGTTCTGACATTCATACGCCAGGTAAAC
CGCTTTCACGATGCCAGGTCTGTATTTTTGCATATACTCTTTTACTTGTA
CCTTCAATCAATGTTTTCTCTGAACCACAGCCTATAACAGTACATGGCAA
ACAGCATAGATGTCGTCAGCAAACGGTATAA
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Synonyms
Publications