jgi.p|Nanoce1779_2|658593, mRNA_9783 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|658593
Unique NamemRNA_9783
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1628
Alignment locationscaffold_32:43367..44994 -

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Properties
Property NameValue
TranscriptId658679
TrackFilteredModels2
ProteinId658593
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_32supercontigscaffold_32:43367..44994 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|658593gene_9783Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9783CDS_9783Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|658593mRNA_9783-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9783 ID=mRNA_9783|Name=jgi.p|Nanoce1779_2|658593|organism=Nannochloropsis oceanica|type=mRNA|length=1628bp
GCCCTTGAATACCCTGGGAAATGCTAATTTTAAATGAACTTTTTTCAAAT
TTTATTTCGATCTCAGGCCCCTGAACTCGGATTTCGCGAATTCAACCATT
CCCTGGAAGCAAGAAAGATATGACACGATCATGGGATTATGCCCTAATGA
CGATTGTCTTCATCACCATAATATTCGCTGTGGAGCTGTGGAGGTCTCCG
GATGCAAGCATGCTAAATTTGCAGAGTCACCAAAGTGAAAAGTCCTGCCT
TCACGAGTCGATTCTATGCGATGCTTCTATGGATTATTCCTACTTGATGA
AATCCAATCCAGAGGCTGCGGCCTTATGGAGGCCGTGTCGTGTGAGATTA
CCCAGAAATGATGGTATTGCAGATATCCCTTTCGCAGAGGGGGAGCAGGA
TGCGTTTACTGTCCGCGTCTGCGCCTCAGCGGGCGAGATATATCTTCACG
TTACTCATCACGAGCTACGTGATTGCATGGTCCCAGGCGCCGCCACGATT
GAAGAGATGGGACTGTCTCATACAGATGCCGCCAAGGACTACATCGAAGT
GCTGTTAGATGGCCCTGAACGACGTTTGCGGCGCTTAGACTTCATGTCAC
ATACTGTGCCTCCAAAGGCGATAGATCCCTTAATAGGTGACTGTGTATTT
ACATTACGATTACCCATATATTTAAGTGGAATGTACCGAGTCCAAATTAT
CGTGGTCCATAGTGACATTGCATTAACAGGCATTGAGCCATACCGTAATT
ACGTCCTCTGGGACCGTTTTCACATTTTGTCGGCCAAAAGTCTTGACCAA
ATTTCTTCCGAGCGGAAAAATGATGGTCTTGAGGCATGGCATAGTACAGG
CATATGGATGCGAAGAGGCGGGAAAAACTTCCCAGGCCATCACTCTGCAC
AGGCCTTGGTAGCCCAAAAGTGGAACAACGAATCGTACCGGTGCCCAGCA
GACGGGACAGCGTCATTTACTTGGATGCCCTATGCAAATGACCTGCCGAG
GGAAACCCTTCCCTATAATATGCGACAACGAAGCATATATAGGCCTCTCA
ACCCCTCCGAAGCGATGGCATGTGCGCGTGCTCTGGCTCCCCAACATATG
TCTACATACCCCAAGCTGGTCCTGTTTGGCGACAGCCTGATGCGTCAGAC
TTTCAACGCCGTCGCATCGGCAATTGGAATGGAAAATGTTACAGCCATCA
AGGAATTCAAATCGCTGATGGAAAGCCAAAACTGGGGTGGGCCATCCATT
GGCCTAGATCTCTCCTTCCAGTGGGCTGCGCGATCTAATGAAGGCCGAGA
CACACGTAAGGAAGCATCGATAAGTGCACTATTATTCGGGTTGCTTAATG
TCACACAAGATACCCTTATCCTTATCTCCGATCACATGATACTCATAATT
GCAGTGAGAGCATTGCTTGAACAAGGCGCGTACGTCCTTGTCAACTACGG
TGCCCACCCACTATGTGACGGCACCATGCTGGATAACCTTAGGATGTTCG
ATGATTGGCTGGAATTTCTTTTGGATATCCTTAAAAATCTGCCGGTCGAC
ACACGGGGCAGAATTGCATGGCTAGGTTCCCACGCAAGGCCCATCATGGG
ATTTCATAATCTATGTCCCACTCCGTAA
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protein sequence of jgi.p|Nanoce1779_2|658593

>mRNA_9783-protein ID=mRNA_9783-protein|Name=jgi.p|Nanoce1779_2|658593|organism=Nannochloropsis oceanica|type=polypeptide|length=503bp
MTRSWDYALMTIVFITIIFAVELWRSPDASMLNLQSHQSEKSCLHESILC
DASMDYSYLMKSNPEAAALWRPCRVRLPRNDGIADIPFAEGEQDAFTVRV
CASAGEIYLHVTHHELRDCMVPGAATIEEMGLSHTDAAKDYIEVLLDGPE
RRLRRLDFMSHTVPPKAIDPLIGDCVFTLRLPIYLSGMYRVQIIVVHSDI
ALTGIEPYRNYVLWDRFHILSAKSLDQISSERKNDGLEAWHSTGIWMRRG
GKNFPGHHSAQALVAQKWNNESYRCPADGTASFTWMPYANDLPRETLPYN
MRQRSIYRPLNPSEAMACARALAPQHMSTYPKLVLFGDSLMRQTFNAVAS
AIGMENVTAIKEFKSLMESQNWGGPSIGLDLSFQWAARSNEGRDTRKEAS
ISALLFGLLNVTQDTLILISDHMILIIAVRALLEQGAYVLVNYGAHPLCD
GTMLDNLRMFDDWLEFLLDILKNLPVDTRGRIAWLGSHARPIMGFHNLCP
TP*
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mRNA from alignment at scaffold_32:43367..44994-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9783 ID=mRNA_9783|Name=jgi.p|Nanoce1779_2|658593|organism=Nannochloropsis oceanica|type=mRNA|length=1628bp|location=Sequence derived from alignment at scaffold_32:43367..44994- (Nannochloropsis oceanica)
GCCCTTGAATACCCTGGGAAATGCTAATTTTAAATGAACTTTTTTCAAAT
TTTATTTCGATCTCAGGCCCCTGAACTCGGATTTCGCGAATTCAACCATT
CCCTGGAAGCAAGAAAGATATGACACGATCATGGGATTATGCCCTAATGA
CGATTGTCTTCATCACCATAATATTCGCTGTGGAGCTGTGGAGGTCTCCG
GATGCAAGCATGCTAAATTTGCAGAGTCACCAAAGTGAAAAGTCCTGCCT
TCACGAGTCGATTCTATGCGATGCTTCTATGGATTATTCCTACTTGATGA
AATCCAATCCAGAGGCTGCGGCCTTATGGAGGCCGTGTCGTGTGAGATTA
CCCAGAAATGATGGTATTGCAGATATCCCTTTCGCAGAGGGGGAGCAGGA
TGCGTTTACTGTCCGCGTCTGCGCCTCAGCGGGCGAGATATATCTTCACG
TTACTCATCACGAGCTACGTGATTGCATGGTCCCAGGCGCCGCCACGATT
GAAGAGATGGGACTGTCTCATACAGATGCCGCCAAGGACTACATCGAAGT
GCTGTTAGATGGCCCTGAACGACGTTTGCGGCGCTTAGACTTCATGTCAC
ATACTGTGCCTCCAAAGGCGATAGATCCCTTAATAGGTGACTGTGTATTT
ACATTACGATTACCCATATATTTAAGTGGAATGTACCGAGTCCAAATTAT
CGTGGTCCATAGTGACATTGCATTAACAGGCATTGAGCCATACCGTAATT
ACGTCCTCTGGGACCGTTTTCACATTTTGTCGGCCAAAAGTCTTGACCAA
ATTTCTTCCGAGCGGAAAAATGATGGTCTTGAGGCATGGCATAGTACAGG
CATATGGATGCGAAGAGGCGGGAAAAACTTCCCAGGCCATCACTCTGCAC
AGGCCTTGGTAGCCCAAAAGTGGAACAACGAATCGTACCGGTGCCCAGCA
GACGGGACAGCGTCATTTACTTGGATGCCCTATGCAAATGACCTGCCGAG
GGAAACCCTTCCCTATAATATGCGACAACGAAGCATATATAGGCCTCTCA
ACCCCTCCGAAGCGATGGCATGTGCGCGTGCTCTGGCTCCCCAACATATG
TCTACATACCCCAAGCTGGTCCTGTTTGGCGACAGCCTGATGCGTCAGAC
TTTCAACGCCGTCGCATCGGCAATTGGAATGGAAAATGTTACAGCCATCA
AGGAATTCAAATCGCTGATGGAAAGCCAAAACTGGGGTGGGCCATCCATT
GGCCTAGATCTCTCCTTCCAGTGGGCTGCGCGATCTAATGAAGGCCGAGA
CACACGTAAGGAAGCATCGATAAGTGCACTATTATTCGGGTTGCTTAATG
TCACACAAGATACCCTTATCCTTATCTCCGATCACATGATACTCATAATT
GCAGTGAGAGCATTGCTTGAACAAGGCGCGTACGTCCTTGTCAACTACGG
TGCCCACCCACTATGTGACGGCACCATGCTGGATAACCTTAGGATGTTCG
ATGATTGGCTGGAATTTCTTTTGGATATCCTTAAAAATCTGCCGGTCGAC
ACACGGGGCAGAATTGCATGGCTAGGTTCCCACGCAAGGCCCATCATGGG
ATTTCATAATCTATGTCCCACTCCGTAA
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Coding sequence (CDS) from alignment at scaffold_32:43367..44994-

>mRNA_9783 ID=mRNA_9783|Name=jgi.p|Nanoce1779_2|658593|organism=Nannochloropsis oceanica|type=CDS|length=1509bp|location=Sequence derived from alignment at scaffold_32:43367..44994- (Nannochloropsis oceanica)
ATGACACGATCATGGGATTATGCCCTAATGACGATTGTCTTCATCACCAT
AATATTCGCTGTGGAGCTGTGGAGGTCTCCGGATGCAAGCATGCTAAATT
TGCAGAGTCACCAAAGTGAAAAGTCCTGCCTTCACGAGTCGATTCTATGC
GATGCTTCTATGGATTATTCCTACTTGATGAAATCCAATCCAGAGGCTGC
GGCCTTATGGAGGCCGTGTCGTGTGAGATTACCCAGAAATGATGGTATTG
CAGATATCCCTTTCGCAGAGGGGGAGCAGGATGCGTTTACTGTCCGCGTC
TGCGCCTCAGCGGGCGAGATATATCTTCACGTTACTCATCACGAGCTACG
TGATTGCATGGTCCCAGGCGCCGCCACGATTGAAGAGATGGGACTGTCTC
ATACAGATGCCGCCAAGGACTACATCGAAGTGCTGTTAGATGGCCCTGAA
CGACGTTTGCGGCGCTTAGACTTCATGTCACATACTGTGCCTCCAAAGGC
GATAGATCCCTTAATAGGTGACTGTGTATTTACATTACGATTACCCATAT
ATTTAAGTGGAATGTACCGAGTCCAAATTATCGTGGTCCATAGTGACATT
GCATTAACAGGCATTGAGCCATACCGTAATTACGTCCTCTGGGACCGTTT
TCACATTTTGTCGGCCAAAAGTCTTGACCAAATTTCTTCCGAGCGGAAAA
ATGATGGTCTTGAGGCATGGCATAGTACAGGCATATGGATGCGAAGAGGC
GGGAAAAACTTCCCAGGCCATCACTCTGCACAGGCCTTGGTAGCCCAAAA
GTGGAACAACGAATCGTACCGGTGCCCAGCAGACGGGACAGCGTCATTTA
CTTGGATGCCCTATGCAAATGACCTGCCGAGGGAAACCCTTCCCTATAAT
ATGCGACAACGAAGCATATATAGGCCTCTCAACCCCTCCGAAGCGATGGC
ATGTGCGCGTGCTCTGGCTCCCCAACATATGTCTACATACCCCAAGCTGG
TCCTGTTTGGCGACAGCCTGATGCGTCAGACTTTCAACGCCGTCGCATCG
GCAATTGGAATGGAAAATGTTACAGCCATCAAGGAATTCAAATCGCTGAT
GGAAAGCCAAAACTGGGGTGGGCCATCCATTGGCCTAGATCTCTCCTTCC
AGTGGGCTGCGCGATCTAATGAAGGCCGAGACACACGTAAGGAAGCATCG
ATAAGTGCACTATTATTCGGGTTGCTTAATGTCACACAAGATACCCTTAT
CCTTATCTCCGATCACATGATACTCATAATTGCAGTGAGAGCATTGCTTG
AACAAGGCGCGTACGTCCTTGTCAACTACGGTGCCCACCCACTATGTGAC
GGCACCATGCTGGATAACCTTAGGATGTTCGATGATTGGCTGGAATTTCT
TTTGGATATCCTTAAAAATCTGCCGGTCGACACACGGGGCAGAATTGCAT
GGCTAGGTTCCCACGCAAGGCCCATCATGGGATTTCATAATCTATGTCCC
ACTCCGTAA
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Synonyms
Publications