jgi.p|Nanoce1779_2|569000, mRNA_9781 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|569000
Unique NamemRNA_9781
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length975
Alignment locationscaffold_32:36307..37281 -

Link to JBrowse

Properties
Property NameValue
TranscriptId569086
TrackFilteredModels2
ProteinId569000
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_32supercontigscaffold_32:36307..37281 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|569000gene_9781Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9781CDS_9781Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|569000mRNA_9781-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9781 ID=mRNA_9781|Name=jgi.p|Nanoce1779_2|569000|organism=Nannochloropsis oceanica|type=mRNA|length=975bp
ATGCCTTATTCCAAATACGAAGAAAAATACGCCCGCAAAAAGCGGATACC
CTCACCCATCGTTATGGTTAGGGTTTGGATGGTGTTTATGGCAATAATCA
CTGGCATCGTCTTTGTCGTATTCATAACCAAATATCTGAATCTAGGCCTC
AATCTAGATCATAAAGGTCCTATTCGCAATGCGAATCCTCCTTCATTTGC
TCCTGCTTATACCAAGCTTGTGTTTGTGACAGCCTGGATCGACCTGGGAG
CCGAACACATAGAAAAGACGCCGGCTTCAAGGCTAGATCACTTTAAAAGA
TTGGCTTCGAGTGGTATTTCTTTGTTTGTATTTACCAGTCCTTCCAATAT
CGATGTCATGGAGAAAGTTCGGATCGAATTCCCCAACATTGTTGGGCTAC
GGTCCGTGGAAATGGATGAATTTCAATCGGTGCGAACCATAAGATCTTTT
ATCGACTTGAGGCTTCCTACTTCTTTAAACGACAATAAGGACACGCACGG
ATTTCTAGAGCTCATGCTGGCAAAAATCGACTTTGTCTACCAAGCCCTCG
CATATACGGACGCAACCCACCTTGCTTGGATAGACTTTAATATAGCCCAC
GTATTTGATGACTCCATAAACGCTCTGGAATCATTGCAAGATTTGCAGCA
AAGGGATCTTGAGCCTCACCTTCTCACATTTCCTGTCATCTGGAATCGCT
CCGACTTCAATATGGAGGAACTCATCCAACGAGTCAACTGGCGTTTCGCC
GGGGGGCTATTTTTAGGCGATCGATACTCTTTGGAACAATGGTACAAGCT
GTGCTCTGACACCCTCAGACTATTCCTTGCCCAGACGCAAACGCTTGTGT
GGGAGGTGAATTTTTGGGCATGGCTTGAAAATGCTTACCCTAATTCTTTT
CGCCCGCAGGTGTACACCTCAGATCATGACAACAGCCTTGTGGCAGTTCC
TGCGACAATGTTTGGTAACTTTTGA
back to top

protein sequence of jgi.p|Nanoce1779_2|569000

>mRNA_9781-protein ID=mRNA_9781-protein|Name=jgi.p|Nanoce1779_2|569000|organism=Nannochloropsis oceanica|type=polypeptide|length=325bp
MPYSKYEEKYARKKRIPSPIVMVRVWMVFMAIITGIVFVVFITKYLNLGL
NLDHKGPIRNANPPSFAPAYTKLVFVTAWIDLGAEHIEKTPASRLDHFKR
LASSGISLFVFTSPSNIDVMEKVRIEFPNIVGLRSVEMDEFQSVRTIRSF
IDLRLPTSLNDNKDTHGFLELMLAKIDFVYQALAYTDATHLAWIDFNIAH
VFDDSINALESLQDLQQRDLEPHLLTFPVIWNRSDFNMEELIQRVNWRFA
GGLFLGDRYSLEQWYKLCSDTLRLFLAQTQTLVWEVNFWAWLENAYPNSF
RPQVYTSDHDNSLVAVPATMFGNF*
back to top

mRNA from alignment at scaffold_32:36307..37281-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9781 ID=mRNA_9781|Name=jgi.p|Nanoce1779_2|569000|organism=Nannochloropsis oceanica|type=mRNA|length=975bp|location=Sequence derived from alignment at scaffold_32:36307..37281- (Nannochloropsis oceanica)
ATGCCTTATTCCAAATACGAAGAAAAATACGCCCGCAAAAAGCGGATACC
CTCACCCATCGTTATGGTTAGGGTTTGGATGGTGTTTATGGCAATAATCA
CTGGCATCGTCTTTGTCGTATTCATAACCAAATATCTGAATCTAGGCCTC
AATCTAGATCATAAAGGTCCTATTCGCAATGCGAATCCTCCTTCATTTGC
TCCTGCTTATACCAAGCTTGTGTTTGTGACAGCCTGGATCGACCTGGGAG
CCGAACACATAGAAAAGACGCCGGCTTCAAGGCTAGATCACTTTAAAAGA
TTGGCTTCGAGTGGTATTTCTTTGTTTGTATTTACCAGTCCTTCCAATAT
CGATGTCATGGAGAAAGTTCGGATCGAATTCCCCAACATTGTTGGGCTAC
GGTCCGTGGAAATGGATGAATTTCAATCGGTGCGAACCATAAGATCTTTT
ATCGACTTGAGGCTTCCTACTTCTTTAAACGACAATAAGGACACGCACGG
ATTTCTAGAGCTCATGCTGGCAAAAATCGACTTTGTCTACCAAGCCCTCG
CATATACGGACGCAACCCACCTTGCTTGGATAGACTTTAATATAGCCCAC
GTATTTGATGACTCCATAAACGCTCTGGAATCATTGCAAGATTTGCAGCA
AAGGGATCTTGAGCCTCACCTTCTCACATTTCCTGTCATCTGGAATCGCT
CCGACTTCAATATGGAGGAACTCATCCAACGAGTCAACTGGCGTTTCGCC
GGGGGGCTATTTTTAGGCGATCGATACTCTTTGGAACAATGGTACAAGCT
GTGCTCTGACACCCTCAGACTATTCCTTGCCCAGACGCAAACGCTTGTGT
GGGAGGTGAATTTTTGGGCATGGCTTGAAAATGCTTACCCTAATTCTTTT
CGCCCGCAGGTGTACACCTCAGATCATGACAACAGCCTTGTGGCAGTTCC
TGCGACAATGTTTGGTAACTTTTGA
back to top

Coding sequence (CDS) from alignment at scaffold_32:36307..37281-

>mRNA_9781 ID=mRNA_9781|Name=jgi.p|Nanoce1779_2|569000|organism=Nannochloropsis oceanica|type=CDS|length=975bp|location=Sequence derived from alignment at scaffold_32:36307..37281- (Nannochloropsis oceanica)
ATGCCTTATTCCAAATACGAAGAAAAATACGCCCGCAAAAAGCGGATACC
CTCACCCATCGTTATGGTTAGGGTTTGGATGGTGTTTATGGCAATAATCA
CTGGCATCGTCTTTGTCGTATTCATAACCAAATATCTGAATCTAGGCCTC
AATCTAGATCATAAAGGTCCTATTCGCAATGCGAATCCTCCTTCATTTGC
TCCTGCTTATACCAAGCTTGTGTTTGTGACAGCCTGGATCGACCTGGGAG
CCGAACACATAGAAAAGACGCCGGCTTCAAGGCTAGATCACTTTAAAAGA
TTGGCTTCGAGTGGTATTTCTTTGTTTGTATTTACCAGTCCTTCCAATAT
CGATGTCATGGAGAAAGTTCGGATCGAATTCCCCAACATTGTTGGGCTAC
GGTCCGTGGAAATGGATGAATTTCAATCGGTGCGAACCATAAGATCTTTT
ATCGACTTGAGGCTTCCTACTTCTTTAAACGACAATAAGGACACGCACGG
ATTTCTAGAGCTCATGCTGGCAAAAATCGACTTTGTCTACCAAGCCCTCG
CATATACGGACGCAACCCACCTTGCTTGGATAGACTTTAATATAGCCCAC
GTATTTGATGACTCCATAAACGCTCTGGAATCATTGCAAGATTTGCAGCA
AAGGGATCTTGAGCCTCACCTTCTCACATTTCCTGTCATCTGGAATCGCT
CCGACTTCAATATGGAGGAACTCATCCAACGAGTCAACTGGCGTTTCGCC
GGGGGGCTATTTTTAGGCGATCGATACTCTTTGGAACAATGGTACAAGCT
GTGCTCTGACACCCTCAGACTATTCCTTGCCCAGACGCAAACGCTTGTGT
GGGAGGTGAATTTTTGGGCATGGCTTGAAAATGCTTACCCTAATTCTTTT
CGCCCGCAGGTGTACACCTCAGATCATGACAACAGCCTTGTGGCAGTTCC
TGCGACAATGTTTGGTAACTTTTGA
back to top
Synonyms
Publications