jgi.p|Nanoce1779_2|605418, mRNA_9780 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|605418
Unique NamemRNA_9780
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1154
Alignment locationscaffold_32:34924..36147 +

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Properties
Property NameValue
TranscriptId605504
TrackFilteredModels2
ProteinId605418
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_32supercontigscaffold_32:34924..36147 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|605418gene_9780Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|605418mRNA_9780-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9780CDS_9780Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9780 ID=mRNA_9780|Name=jgi.p|Nanoce1779_2|605418|organism=Nannochloropsis oceanica|type=mRNA|length=1154bp
AGTATCTATTCTCACGTACTGTGCAGATAAACTGGCTGTCTTACCAAAAG
CAACATGGCATTATTCGAACTCAAAGCGCATCCTCGCCGTTTACAAACTA
TGGCGCCATCGATCCTCCTGTTTGCTCCAGGTACCCTCACTACCGCATTT
CTCTTCATGTTCTTTACGTGGACATTGTTCCTCATGGCACTGCAACAATT
ATCTATAACCCGATGTTCTGAATTAAGATCAGACTCTACCCTTCTTGCTG
GTTACGTTAATTACGCACTTCCCTTCCCAGTGTATTATATCAACATGGAG
CAGAGCTCTGCGCGGCGAGAGAGGATGGAGCTCGATTTCGGCGGTATATG
GGACCTACGACGGAGCCCTGCCGTGGACGGAACGGATACAGATATGGTGC
TCCAGCTCATGGGCCGAGCAAACTACGACGAAATAGCTCCGTCCATCTCA
GATGAAAGACGTCAAGGCACTATAAATGGCGGAGAGCTTGGCTGTATACT
ATCGCATCTCATGGCGATAAAACGCGCATATCTGGAAGGGAACGAGATCG
CGATGATTGTGGAAGATGATATCACGCCCTTACTCATGTTAGTGCTCGTA
GGATGGCTAACTTAAATTTCTACTTCTTGCCCTTACATGCACATTATATT
CACTCCACCTGTAGGCCATTTTGGACATGTTCACTCATTGATGTAGTCAA
CGAAGCAGGAAACTATTCAACGGGCACGTGGGATATGGTTCAAATGGCTT
GGATTTGGGGCATGGATAAGACCTTGTATGATAGAGGTGCGCATAATTTT
GGTCCACGCCGTCATATCTTGCAAACACGGTTTCAGTTCGGCACGTCGGC
GTATGTCATTTCCAAAAGAGGAATGGAAAAGATACTTGATGCCTATTTTA
CTGACAGTACAGAGAACGGACAGATTTGTCTTCGAAGAGGGGGCGACCAA
GCCGAGCTCTACATTTACGGTGCTATCTCGAATTTATTTGTTGCTGTGCC
CTCATTTTTCACTATTGAGGGATCTGATACTACCATTTCAACAGGAGAAG
AAAGTCAACTGCGCCTGTCCAGCCATCGGGAGTCCAACAGCATCCATATC
AAGACTGCGTTTGACCTTTTTCACGAAATGAAGAAGGAAAAGCTCGCCTC
CGAG
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protein sequence of jgi.p|Nanoce1779_2|605418

>mRNA_9780-protein ID=mRNA_9780-protein|Name=jgi.p|Nanoce1779_2|605418|organism=Nannochloropsis oceanica|type=polypeptide|length=187bp
MALFELKAHPRRLQTMAPSILLFAPGTLTTAFLFMFFTWTLFLMALQQLS
ITRCSELRSDSTLLAGYVNYALPFPVYYINMEQSSARRERMELDFGGIWD
LRRSPAVDGTDTDMVLQLMGRANYDEIAPSISDERRQGTINGGELGCILS
HLMAIKRAYLEGNEIAMIVEDDITPLLMLVLVGWLT*
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mRNA from alignment at scaffold_32:34924..36147+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9780 ID=mRNA_9780|Name=jgi.p|Nanoce1779_2|605418|organism=Nannochloropsis oceanica|type=mRNA|length=1224bp|location=Sequence derived from alignment at scaffold_32:34924..36147+ (Nannochloropsis oceanica)
AGTATCTATTCTCACGTACTGTGCAGATAAACTGGCTGTCTTACCAAAAG
CAACATGGCATTATTCGAACTCAAAGCGCATCCTCGCCGTTTACAAACTA
TGGCGCCATCGATCCTCCTGTTTGCTCCAGGTACCCTCACTACCGCATTT
CTCTTCATGTTCTTTACGTGGACATTGTTCCTCATGGCACTGCAACAATT
ATCTATAACCCGATGTTCTGAATTAAGGTACGTCCAGAGAAGATACTCCA
GCTCTCAACATGTCTGACCGTGCCTGGGCAATCACCTTATTCTACAGATC
AGACTCTACCCTTCTTGCTGGTTACGTTAATTACGCACTTCCCTTCCCAG
TGTATTATATCAACATGGAGCAGAGCTCTGCGCGGCGAGAGAGGATGGAG
CTCGATTTCGGCGGTATATGGGACCTACGACGGAGCCCTGCCGTGGACGG
AACGGATACAGATATGGTGCTCCAGCTCATGGGCCGAGCAAACTACGACG
AAATAGCTCCGTCCATCTCAGATGAAAGACGTCAAGGCACTATAAATGGC
GGAGAGCTTGGCTGTATACTATCGCATCTCATGGCGATAAAACGCGCATA
TCTGGAAGGGAACGAGATCGCGATGATTGTGGAAGATGATATCACGCCCT
TACTCATGTTAGTGCTCGTAGGATGGCTAACTTAAATTTCTACTTCTTGC
CCTTACATGCACATTATATTCACTCCACCTGTAGGCCATTTTGGACATGT
TCACTCATTGATGTAGTCAACGAAGCAGGAAACTATTCAACGGGCACGTG
GGATATGGTTCAAATGGCTTGGATTTGGGGCATGGATAAGACCTTGTATG
ATAGAGGTGCGCATAATTTTGGTCCACGCCGTCATATCTTGCAAACACGG
TTTCAGTTCGGCACGTCGGCGTATGTCATTTCCAAAAGAGGAATGGAAAA
GATACTTGATGCCTATTTTACTGACAGTACAGAGAACGGACAGATTTGTC
TTCGAAGAGGGGGCGACCAAGCCGAGCTCTACATTTACGGTGCTATCTCG
AATTTATTTGTTGCTGTGCCCTCATTTTTCACTATTGAGGGATCTGATAC
TACCATTTCAACAGGAGAAGAAAGTCAACTGCGCCTGTCCAGCCATCGGG
AGTCCAACAGCATCCATATCAAGACTGCGTTTGACCTTTTTCACGAAATG
AAGAAGGAAAAGCTCGCCTCCGAG
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Coding sequence (CDS) from alignment at scaffold_32:34924..36147+

>mRNA_9780 ID=mRNA_9780|Name=jgi.p|Nanoce1779_2|605418|organism=Nannochloropsis oceanica|type=CDS|length=1122bp|location=Sequence derived from alignment at scaffold_32:34924..36147+ (Nannochloropsis oceanica)
ATGGCATTATTCGAACTCAAAGCGCATCCTCGCCGTTTACAAACTATGGC
GCCATCGATCCTCCTGTTTGCTCCAGGTACCCTCACTACCGCATTTCTCT
TCATGTTCTTTACGTGGACATTGTTCCTCATGGCACTGCAACAATTATCT
ATAACCCGATGTTCTGAATTAAGATCAGACTCTACCCTTCTTGCTGGTTA
CGTTAATTACGCACTTCCCTTCCCAGTGTATTATATCAACATGGAGCAGA
GCTCTGCGCGGCGAGAGAGGATGGAGCTCGATTTCGGCGGTATATGGGAC
CTACGACGGAGCCCTGCCGTGGACGGAACGGATACAGATATGGTGCTCCA
GCTCATGGGCCGAGCAAACTACGACGAAATAGCTCCGTCCATCTCAGATG
AAAGACGTCAAGGCACTATAAATGGCGGAGAGCTTGGCTGTATACTATCG
CATCTCATGGCGATAAAACGCGCATATCTGGAAGGGAACGAGATCGCGAT
GATTGTGGAAGATGATATCACGCCCTTACTCATGTTAGTGCTCGTAGGAT
GGCTAACTTAAATGGCATTATTCGAACTCAAAGCGCATCCTCGCCGTTTA
CAAACTATGGCGCCATCGATCCTCCTGTTTGCTCCAGGTACCCTCACTAC
CGCATTTCTCTTCATGTTCTTTACGTGGACATTGTTCCTCATGGCACTGC
AACAATTATCTATAACCCGATGTTCTGAATTAAGATCAGACTCTACCCTT
CTTGCTGGTTACGTTAATTACGCACTTCCCTTCCCAGTGTATTATATCAA
CATGGAGCAGAGCTCTGCGCGGCGAGAGAGGATGGAGCTCGATTTCGGCG
GTATATGGGACCTACGACGGAGCCCTGCCGTGGACGGAACGGATACAGAT
ATGGTGCTCCAGCTCATGGGCCGAGCAAACTACGACGAAATAGCTCCGTC
CATCTCAGATGAAAGACGTCAAGGCACTATAAATGGCGGAGAGCTTGGCT
GTATACTATCGCATCTCATGGCGATAAAACGCGCATATCTGGAAGGGAAC
GAGATCGCGATGATTGTGGAAGATGATATCACGCCCTTACTCATGTTAGT
GCTCGTAGGATGGCTAACTTAA
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Synonyms
Publications