jgi.p|Nanoce1779_2|605414, mRNA_9779 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|605414
Unique NamemRNA_9779
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length909
Alignment locationscaffold_32:32020..33006 -

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Properties
Property NameValue
TranscriptId605500
TrackFilteredModels2
ProteinId605414
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_32supercontigscaffold_32:32020..33006 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|605414gene_9779Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|605414mRNA_9779-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9779CDS_9779Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9779 ID=mRNA_9779|Name=jgi.p|Nanoce1779_2|605414|organism=Nannochloropsis oceanica|type=mRNA|length=909bp
GTCGCTATTCATGTAAGTCTTAACGCAATGTCTTTCGAAGGCCAGTCCTC
CCCCCCCCAATTTCCCACCAAATTAAAATCATGACCTATCAATTTATCTT
CCAGCTACGCGTTGGTGACGTGGTGTTGCTTGATGGTGACCAAGGCAAAG
GATTTTTTTCGAGGCTCAAAAGCCAGCTCGACACCGTGCTTACCTTTTCT
CCTGTCCATTACTTTTTCTTTGCGGAAGCGCCTAATGACGAATCGGTAAA
TGAGCTTCTAGTTCCCCCTGCTGGATTCGACTTTTTAGCTGACATATTTG
GGAACAGAAGTCATCAGAAAGAGGGTGTTTCCTCACATCGTATGTCCTAT
ATTAAGCATATGGGTGTCAAAGAGACACTTTACCACCACATGAATGCGGA
CATGGTTATTGCCACTGGCTCCTCGTTCCCATTGGTTGCAGTTACGGTGT
CGTCTAAGCCCGTAGTGCTATTCACCAAATCAAAAGAAGGAGGCTTTTAT
CCCTCCCAGATGCGAGCGGATTATGCAATGATTGGGGATGACGGGACAAT
CTTATCACCCACGATTGCAGAATTGTCGGCACAAACACTCATGCGATTCC
TAGAAGTACACGATAAAGAAGTGCCCTATGGGTGAAACTTTCAATTTACG
CGAGGTAGGTGATGAGGTGAACGCCACAACGAGATTAACTCTTTCTATAT
TACCTAGATAGAATGCAATCGTCAGTCAGTCAAAGTCTAGGTATACGGAG
TGAAATGGAGGATGACAACCGTTATGTGCGCGTCCCCCAGCGCCTCCCGG
CGGCCCGCTCAAGTACAGCTGAGACTCTCTGCACCTGTGAGAGCGGGAGG
GAGTGACCACTCCGTGGCACCTAGACCGCAAACCTTTGTGACTAGATGGG
ACATCGGGG
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protein sequence of jgi.p|Nanoce1779_2|605414

>mRNA_9779-protein ID=mRNA_9779-protein|Name=jgi.p|Nanoce1779_2|605414|organism=Nannochloropsis oceanica|type=polypeptide|length=185bp
MTYQFIFQLRVGDVVLLDGDQGKGFFSRLKSQLDTVLTFSPVHYFFFAEA
PNDESVNELLVPPAGFDFLADIFGNRSHQKEGVSSHRMSYIKHMGVKETL
YHHMNADMVIATGSSFPLVAVTVSSKPVVLFTKSKEGGFYPSQMRADYAM
IGDDGTILSPTIAELSAQTLMRFLEVHDKEVPYG*
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mRNA from alignment at scaffold_32:32020..33006-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9779 ID=mRNA_9779|Name=jgi.p|Nanoce1779_2|605414|organism=Nannochloropsis oceanica|type=mRNA|length=987bp|location=Sequence derived from alignment at scaffold_32:32020..33006- (Nannochloropsis oceanica)
GTCGCTATTCATGTAAGTCTTAACGCAATGTCTTTCGAAGGCCAGTCCTC
CCCCCCCCAATTTCCCACCAAATTAAAATCATGACCTATCAATTTATCTT
CCAGCTACGCGTTGGTGACGTGGTGTTGCTTGATGGTGACCAAGGCAAAG
GATTTTTTTCGAGGCTCAAAAGCCAGCTCGACACCGTGCTTACCTTTTCT
CCTGTCCATTACTTTTTCTTTGCGGAAGCGCCTAATGACGAATCGGTAAA
TGAGCTTCTAGTTCCCCCTGCTGGATTCGACTTTTTAGCTGACATATTTG
GGAACAGAAGTCATCAGAAAGAGGGTGTTTCCTCACATCGTATGTCCTAT
ATTAAGCATATGGGTGTCAAAGAGACACTTTACCACCACATGAATGCGGA
CATGGTTATTGCCACTGGCTCCTCGTTCCCATTGGTTGCAGTTACGGTGT
CGTCTAAGGTATGTGGGCACTTAGATGACGCTAATTTTGGTTCTTCCACC
ATTTTCCCACCTTATACACGCTCCTGCTTTTTCCAGCCCGTAGTGCTATT
CACCAAATCAAAAGAAGGAGGCTTTTATCCCTCCCAGATGCGAGCGGATT
ATGCAATGATTGGGGATGACGGGACAATCTTATCACCCACGATTGCAGAA
TTGTCGGCACAAACACTCATGCGATTCCTAGAAGTACACGATAAAGAAGT
GCCCTATGGGTGAAACTTTCAATTTACGCGAGGTAGGTGATGAGGTGAAC
GCCACAACGAGATTAACTCTTTCTATATTACCTAGATAGAATGCAATCGT
CAGTCAGTCAAAGTCTAGGTATACGGAGTGAAATGGAGGATGACAACCGT
TATGTGCGCGTCCCCCAGCGCCTCCCGGCGGCCCGCTCAAGTACAGCTGA
GACTCTCTGCACCTGTGAGAGCGGGAGGGAGTGACCACTCCGTGGCACCT
AGACCGCAAACCTTTGTGACTAGATGGGACATCGGGG
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Coding sequence (CDS) from alignment at scaffold_32:32020..33006-

>mRNA_9779 ID=mRNA_9779|Name=jgi.p|Nanoce1779_2|605414|organism=Nannochloropsis oceanica|type=CDS|length=1110bp|location=Sequence derived from alignment at scaffold_32:32020..33006- (Nannochloropsis oceanica)
CCCGTAGTGCTATTCACCAAATCAAAAGAAGGAGGCTTTTATCCCTCCCA
GATGCGAGCGGATTATGCAATGATTGGGGATGACGGGACAATCTTATCAC
CCACGATTGCAGAATTGTCGGCACAAACACTCATGCGATTCCTAGAAGTA
CACGATAAAGAAGTGCCCTATGGGTGAATGACCTATCAATTTATCTTCCA
GCTACGCGTTGGTGACGTGGTGTTGCTTGATGGTGACCAAGGCAAAGGAT
TTTTTTCGAGGCTCAAAAGCCAGCTCGACACCGTGCTTACCTTTTCTCCT
GTCCATTACTTTTTCTTTGCGGAAGCGCCTAATGACGAATCGGTAAATGA
GCTTCTAGTTCCCCCTGCTGGATTCGACTTTTTAGCTGACATATTTGGGA
ACAGAAGTCATCAGAAAGAGGGTGTTTCCTCACATCGTATGTCCTATATT
AAGCATATGGGTGTCAAAGAGACACTTTACCACCACATGAATGCGGACAT
GGTTATTGCCACTGGCTCCTCGTTCCCATTGGTTGCAGTTACGGTGTCGT
CTAAGCCCGTAGTGCTATTCACCAAATCAAAAGAAGGAGGCTTTTATCCC
TCCCAGATGCGAGCGGATTATGCAATGATTGGGGATGACGGGACAATCTT
ATCACCCACGATTGCAGAATTGTCGGCACAAACACTCATGCGATTCCTAG
AAGTACACGATAAAGAAGTGCCCTATGGGTGAATGACCTATCAATTTATC
TTCCAGCTACGCGTTGGTGACGTGGTGTTGCTTGATGGTGACCAAGGCAA
AGGATTTTTTTCGAGGCTCAAAAGCCAGCTCGACACCGTGCTTACCTTTT
CTCCTGTCCATTACTTTTTCTTTGCGGAAGCGCCTAATGACGAATCGGTA
AATGAGCTTCTAGTTCCCCCTGCTGGATTCGACTTTTTAGCTGACATATT
TGGGAACAGAAGTCATCAGAAAGAGGGTGTTTCCTCACATCGTATGTCCT
ATATTAAGCATATGGGTGTCAAAGAGACACTTTACCACCACATGAATGCG
GACATGGTTATTGCCACTGGCTCCTCGTTCCCATTGGTTGCAGTTACGGT
GTCGTCTAAG
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Synonyms
Publications