jgi.p|Nanoce1779_2|607193, mRNA_9776 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|607193
Unique NamemRNA_9776
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length770
Alignment locationscaffold_37:203912..205510 -

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Properties
Property NameValue
TranscriptId607279
TrackFilteredModels2
ProteinId607193
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_37supercontigscaffold_37:203912..205510 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|607193gene_9776Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|607193mRNA_9776-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9776CDS_9776Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9776 ID=mRNA_9776|Name=jgi.p|Nanoce1779_2|607193|organism=Nannochloropsis oceanica|type=mRNA|length=770bp
GCCAAAATTTCGTCTTCTTGCCCGAGGACGCTGCTGCTTCTCACCAGCGA
CCCGCCCTCCCTCGCTCCCTCCCTCCCGCCCTCCTTCTCCCCACCCTGCT
GCTGGGCAGGCGGGCAGGACAAGGGAGAGAGAGGCTTGAGACGAATGCCA
CGTCCTCCCGAGGGCATGGAGGGAGGAGGGAGGCGGCCTTGGGAGAAAGA
GTGCATGTAGGCGTCGATTCGGGCCTGCGTGAGGCCCTCCACATAGCCCC
GTCCGTCTTGGAAGGTGGCGTGGACCAAGTCGGTCACGAATTGGTCTGGA
CACTCTTGAGGAGCATACGGGACGATAAAAAAGAATTCACGGGCACTGCC
GTCCACCATGCGCATCTTGAAGCCTTCTTCCTCCTTGTCCAGCTCTGCCC
TTATCCTGGCCACGATACCCGCGGCCTCCTCCAACATGGGCAGCACGTCT
TGTTTCTTAAACGGAGGCTCCGCCCAGCCCTTACGGAAACGTAGCTGTGT
CCAGAAGTCGGAGTATGCCGCCACGATGGCCCGCGCCGCCTTACGCTCTG
CCAGCGTCAAACCGTCTCCTGCAGAACCGGAGGAACTGATCGCAGCATGT
GGCCGACGAGGCAAGGGAGAGGAGGAAGGAGGATGCGGGGGACGATGATG
ATGGTGATGGGGGAGGGGAGGCTTGGCCGCAGCTGGTTGTGAGGAGGAAG
GAGAGGAGGATGGGGGGGCTGCGGAGGAGAAGCCCGATGATACAGGGACG
CGGCGCACCATTTTGGTCTG
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protein sequence of jgi.p|Nanoce1779_2|607193

>mRNA_9776-protein ID=mRNA_9776-protein|Name=jgi.p|Nanoce1779_2|607193|organism=Nannochloropsis oceanica|type=polypeptide|length=97bp
MRILKPSSSLSSSALILATIPAASSNMGSTSCFLNGGSAQPLRKRSCVQK
SEYAATMARAALRSASVKPSPAEPEELIAACGRRGKGEEEGGCGGR*
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mRNA from alignment at scaffold_37:203912..205510-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9776 ID=mRNA_9776|Name=jgi.p|Nanoce1779_2|607193|organism=Nannochloropsis oceanica|type=mRNA|length=1599bp|location=Sequence derived from alignment at scaffold_37:203912..205510- (Nannochloropsis oceanica)
GCCAAAATTTCGTCTTCTTGCCCGAGGACGCTGCTGCTTCTCACCAGCGA
CCCGCCCTCCCTCGCTCCCTCCCTCCCGCCCTCCTTCTCCCCACCCTGCT
GCTGGGCAGGCGGGCAGGACAAGGGAGAGAGAGGCTTGAGACGAATGCCA
CGTCCTCCCGAGGGCATGGAGGGAGGAGGGAGGCGGCCTTGGGAGAAAGA
GTGCATGTAGGCGTCGATTCGGGCCTGGAGGGAAGAGAGGGAGGGAGAGA
GGGAGGAATGATGTGTGGAAGGAAGGGAGAGAGCGAAAGGGGGAGGGAGG
GAGGGAGGGAGGGAGAAAGGAGGGGGGGAATGAGGAAGGGAGGAAGGGCG
TACCTGCGTGAGGCCCTCCACATAGCCCCGTCCGTCTTGGAAGGTGGCGT
GGACCAAGTCGGTCACGAATTGGTCTGTGAGGGAGGGAGAGAGGGGAGGA
GGGGGGAAGGGAGGGAGGGAGGGAAGGAAGGAGGGGGGGAGGGATTGCTC
AGGTACGTGAGATCAAGATGGCCAGCGTGTAATGAAGACGTTTGGCCATC
CCTCCCTCCCTACCCCCCTACCTGGACACTCTTGAGGAGCATACGGGACG
ATAAAAAAGAATTCACGGGCACTGCCGTCCACCATGCGCATCTTGAAGCC
TTCTTCCTGTTGAGTGAAAAGGGGGCGGGAGGGAAAGAATGAGAGAGGGA
GTGAGGGAGGGAGTGAGGGAGGAAGGGAGGAAGGGAGGGCACGGGCTCAT
TGACCAGCTTCATCACTCCCCCCCTCTCCATGTTTTTAGGATGATGATTG
TCACCTCCCTCTCTCGATGATTGTCACCTCCCTCTCTCCATCTAAACGGC
ATCTGAATCCTATGGTTTCCCGAATCCGCGTCTTGTGTCCTCTCACACAG
TCAAGCAAGCCCTCTTTCCCCCCTTTCCTCCCTCACTCACTTTTTCCCGC
CCTCCCTCTCTCCGTACCTCCTTGTCCAGCTCTGCCCTTATCCTGGCCAC
GATACCCGCGGCCTCCTCCAACATGGGCAGCACGTCTTGTTTCTTAAACG
GAGGCTCCGCCCAGCCCTTACGGAAACGTAGCTGGATAGTGGGAGGGATG
GGGAGGGAGGGTGGGTTATTTGAGAGCTTGGTTCACGTGGTCAAGTCGAA
GCTGCTGCGGCCGATTGAATTGGTAGGCGATGCTAGATAAATGGAGGAAG
GAAGACAGGAACGAACCACAAAAACGCCGCATGTCTGCTGCCTCCTCCCT
TCTGCAAATATGTTCTTTCTTTGGCCTCGCCCTCCTCCCCTCCCTCTCCA
TCCCGCCCTTCCATGCCACTTACCTGTGTCCAGAAGTCGGAGTATGCCGC
CACGATGGCCCGCGCCGCCTTACGCTCTGCCAGCGTCAAACCGTCTCCTG
CAGAACCGGAGGAACTGATCGCAGCATGTGGCCGACGAGGCAAGGGAGAG
GAGGAAGGAGGATGCGGGGGACGATGATGATGGTGATGGGGGAGGGGAGG
CTTGGCCGCAGCTGGTTGTGAGGAGGAAGGAGAGGAGGATGGGGGGGCTG
CGGAGGAGAAGCCCGATGATACAGGGACGCGGCGCACCATTTTGGTCTG
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Coding sequence (CDS) from alignment at scaffold_37:203912..205510-

>mRNA_9776 ID=mRNA_9776|Name=jgi.p|Nanoce1779_2|607193|organism=Nannochloropsis oceanica|type=CDS|length=873bp|location=Sequence derived from alignment at scaffold_37:203912..205510- (Nannochloropsis oceanica)
CTGTGTCCAGAAGTCGGAGTATGCCGCCACGATGGCCCGCGCCGCCTTAC
GCTCTGCCAGCGTCAAACCGTCTCCTGCAGAACCGGAGGAACTGATCGCA
GCATGTGGCCGACGAGGCAAGGGAGAGGAGGAAGGAGGATGCGGGGGACG
ATGACTCCTTGTCCAGCTCTGCCCTTATCCTGGCCACGATACCCGCGGCC
TCCTCCAACATGGGCAGCACGTCTTGTTTCTTAAACGGAGGCTCCGCCCA
GCCCTTACGGAAACGTAGATGCGCATCTTGAAGCCTTCTTCCTGTGTCCA
GAAGTCGGAGTATGCCGCCACGATGGCCCGCGCCGCCTTACGCTCTGCCA
GCGTCAAACCGTCTCCTGCAGAACCGGAGGAACTGATCGCAGCATGTGGC
CGACGAGGCAAGGGAGAGGAGGAAGGAGGATGCGGGGGACGATGACTCCT
TGTCCAGCTCTGCCCTTATCCTGGCCACGATACCCGCGGCCTCCTCCAAC
ATGGGCAGCACGTCTTGTTTCTTAAACGGAGGCTCCGCCCAGCCCTTACG
GAAACGTAGATGCGCATCTTGAAGCCTTCTTCCTGTGTCCAGAAGTCGGA
GTATGCCGCCACGATGGCCCGCGCCGCCTTACGCTCTGCCAGCGTCAAAC
CGTCTCCTGCAGAACCGGAGGAACTGATCGCAGCATGTGGCCGACGAGGC
AAGGGAGAGGAGGAAGGAGGATGCGGGGGACGATGACTCCTTGTCCAGCT
CTGCCCTTATCCTGGCCACGATACCCGCGGCCTCCTCCAACATGGGCAGC
ACGTCTTGTTTCTTAAACGGAGGCTCCGCCCAGCCCTTACGGAAACGTAG
ATGCGCATCTTGAAGCCTTCTTC
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Synonyms
Publications