jgi.p|Nanoce1779_2|607187, mRNA_9775 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|607187
Unique Name	mRNA_9775
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2951
Alignment location	scaffold_37:200550..203500 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	607273
Track	FilteredModels2
ProteinId	607187

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_37	supercontig	scaffold_37:200550..203500 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|607187	gene_9775	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|607187	mRNA_9775-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_9775	CDS_9775	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_37:200550..203500-
coding sequence from alignment at scaffold_37:200550..203500-

mRNA sequence

>mRNA_9775 ID=mRNA_9775|Name=jgi.p|Nanoce1779_2|607187|organism=Nannochloropsis oceanica|type=mRNA|length=2951bp
GCTGCCTCGTAACCGACTCACATCAACTGTCCCCTGCAATGTCTTTCGTG
CCTTCCCCGCTCTACCCATCTCACGTACCGGCGCCACCACACACAGAGGC
TGATAATATACGCCCAAAACCTGCGACATAGAGAGCGGTACCGGAACTGC
TGCAAGCGCGGCCGTTAAAGTCCATCGATCTAATCACGAGAGTAATAACG
AGCGAGCGCGGATGAAGTGAGGCACGCAACAGGAACAGGAACACAAGACC
GAAACCCAACAGCAGCACCATGGCCAAGACCCGCCAATGGATCCTCTCAC
TCCTTGCTCACGTCCTTATCATACTCGCTAGCACGGCTGCTTTCTCCTCC
ATCCTCTCCCGATCGCCGCCCCATAGGCTCCCCTATCTTCATGCAATCAA
GCCAAGTGCGCCCCGTCGCTCTACGCTTCCGACCCAACATCTTCCGAGCC
ATGACGACACTTCCTCGCCCTCTTTCCGCTCTTACACCATCATTCCGCAT
TCCGTCTCCCCCTTGCTTCTTCGCCTCCGCCAAGCCACCGCACCCGTCAT
CCTCTCCCTCCTTAGCCTCCTTTGCGGCAGTGTCGGCATTGCTTCATTCT
CCCCCTCTGCTCCCGCCTCCGCCGCCACCACCTCTACGAGCACCACCCTC
CTTCCTTCTCCGCTCACCGTTCCTCGGGGAAGCGGTCAGACTTACTCTCA
AGCGATGGCCTCGACGGACCCCCAGCATGTCAAGGAGATCAACCGCCGCT
TTGCCCGGCACGTGTGGGCGACGATTGGCCTGTCCTTCTACGATAAAAGT
GGAGGGGGGATTTTAGGGGGCCGAGGAGGACATGACCCGGCCTGGGAGCG
AGTCTGGGCCGCGGCCGAGAAGAGAGGAGAGGGAGGTGTTGGAGGAGGAG
GAGGAAGCAAAGGATTTGAAACCGTGGAGGGGACGAGAGAGGTGATTCGG
TTCATGGTGGGGGAGTTGAAGGATGAGTATTCGGCATACATGGCACCACA
GGAGATCGGCGGACTTTTTCGTCGGTACCCGTCCAAGGCCCAACCGCAAT
TGGAACGGCCGGTGATTGCCCCGACGTCTTCCTCGTCTACAAGCACCATC
ACGGCGGCAACGACGACAACGACGAAACAAGGCAGCAGCAGTAGCGGCAA
CACCAAAGACGACAAGGCTGATGGAAGTATGTCCCTCTCGGCCTCAGTAG
GCATGCAGCTTGAGCCGGCCGCGTATTGCCCCCCTGCCACCATGCTTCAG
CCCCATTACAACGCTGCAACCAATATGTACGACTACCCCTCCCTCTCCCC
CTCCTCCTTCCCTTACCCCTCCTCCTCTTCCTCCGCTTTCACATGGCTCC
CTGCCTTCTTCCAGCCCTCCTTTCCTCCTTCTTACTCTCGGCCATGCGCT
GTAGTCGTGGGGGTCTTGCCCAACTCTCCCGCGGAGGAAGCAGGGATTCG
AATCGGCGACCGTGTGAGCAAAGTGGGCCATATCATGACTAAGAATACGG
CGGGCTGGGACCGAGACGGCACATTAGAAAATACGCTATTACAAGGGAAG
GAGGGAACGTCGATTCAAGTAGAGCTTATGCGGGTGGTGTCGGAGGGAGA
GAAGGAAGGGAGGGAACAGCGCGTGCCCTTGACATTGCGTCGTCGGTCGT
TTGCTTCAAGCAAGTACCCGGCAATGCGAGTTCAGTCTTTGTTAGACGAA
GAGGGTCGACGAGTCTGCTATATTCGCCTGCATCGCTTTGATGCCCCGGC
CACAGCGCAGCTCCGTTCGGTTCTGTACGCAGAAGAGCGCGTGGGCGCCG
AGGCTTATGTGATCGATTTGCGGAATAACATGGGAGGGATCTTTCAAGAA
AGTTTGAAGATGGCCGCCTTGTTTTTGCCGGACCCCAAGTCTGTGCTGTG
CTTTACGATGGATGCTTGGGGGGGTTATAGCGCGCATTTGGCTGAGGAGT
ACGATACGTCCGCCACCTTGCCCCTGACTGCGTCCGGCTCTCGTGCGAGT
GCTCGTGCCGCGGCCTTGCTGTTGGCTCGCGGTGAGTTTGGCGACAAGTG
GGCACCTTTGGTGTCCCCGAAGAAGCCTGTCGTAGTCTTAGTGAACAAGG
GCTCGGCGTCGTCCTCGGAAACTTTTGCAGCGGCGTTGCACGACAATGAC
CGGGCCTGGTTGGTTGGCGAACGGACATTTGGCAAGTCGCTGATTCAGCA
CTTGTTTCCCTTGCCGGACGGGGGGGCATTAAAGTTAACAGTGGCGGAAT
ATCTTACTCCTAAACAGCGACACTTGGCCCGGATTCGCCTGCCGGGACCC
ACACGAGGCCGCTCTGTGAGTGCTACGACTTTCAATGCAGGTAAGTGTTG
TAGCGGGGCACGGAGGAAAATAATGGGATTGAGACACACAGGAATAATCA
TACAAAGGCTCACATGCTTCTAACTATTGATCTACCTCTTGTTCTAACCA
TAAGGTTTGGAGCCAGATTTAGCCGTTGCTGACTCCACCCCACGGCCAAA
CAGCATGGACGATTCTGCGCTTACTCAAGCCCTGGACCTGCTGGCTAAAC
AGCCCTTCCCGGAAAGAGGGGGGGGAAGAGGGCAAGGAGAAGGGGGAGGA
AAGATTGTACACGCGGATGTCTTCTTGTCATTCCTTTCTCACTCGAATAG
AAAGTGAAGGGAAGAGGAGGCGGAGGTGGAGTCGTTCTTATGTAAAATTC
ACCCTGTAATATTATTTCTGTTCAATTTGATATTTCGCCTTGTGCTAGTA
ACATTTCTGCATGCCGGGCTTGTTAAAAAAACATTGATCAATATAGAAAT
ATATGGAATGGCTGCCTTCACGGCGCACGGTTCTATAGAGGGCTGAGAAG
GCAGGGCCTTTGGTTTTGCGGCCAGCTGGGATTAGGTTGCACATAAATTG
AAAGGAGTTCATTGAAACACCGATAAAGATATCGACAAAACGTTATACCA
A

protein sequence of jgi.p|Nanoce1779_2|607187

>mRNA_9775-protein ID=mRNA_9775-protein|Name=jgi.p|Nanoce1779_2|607187|organism=Nannochloropsis oceanica|type=polypeptide|length=718bp
MAKTRQWILSLLAHVLIILASTAAFSSILSRSPPHRLPYLHAIKPSAPRR
STLPTQHLPSHDDTSSPSFRSYTIIPHSVSPLLLRLRQATAPVILSLLSL
LCGSVGIASFSPSAPASAATTSTSTTLLPSPLTVPRGSGQTYSQAMASTD
PQHVKEINRRFARHVWATIGLSFYDKSGGGILGGRGGHDPAWERVWAAAE
KRGEGGVGGGGGSKGFETVEGTREVIRFMVGELKDEYSAYMAPQEIGGLF
RRYPSKAQPQLERPVIAPTSSSSTSTITAATTTTTKQGSSSSGNTKDDKA
DGSMSLSASVGMQLEPAAYCPPATMLQPHYNAATNMYDYPSLSPSSFPYP
SSSSSAFTWLPAFFQPSFPPSYSRPCAVVVGVLPNSPAEEAGIRIGDRVS
KVGHIMTKNTAGWDRDGTLENTLLQGKEGTSIQVELMRVVSEGEKEGREQ
RVPLTLRRRSFASSKYPAMRVQSLLDEEGRRVCYIRLHRFDAPATAQLRS
VLYAEERVGAEAYVIDLRNNMGGIFQESLKMAALFLPDPKSVLCFTMDAW
GGYSAHLAEEYDTSATLPLTASGSRASARAAALLLARGEFGDKWAPLVSP
KKPVVVLVNKGSASSSETFAAALHDNDRAWLVGERTFGKSLIQHLFPLPD
GGALKLTVAEYLTPKQRHLARIRLPGPTRGRSVSATTFNAGKCCSGARRK
IMGLRHTGIIIQRLTCF*

mRNA from alignment at scaffold_37:200550..203500-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9775 ID=mRNA_9775|Name=jgi.p|Nanoce1779_2|607187|organism=Nannochloropsis oceanica|type=mRNA|length=2951bp|location=Sequence derived from alignment at scaffold_37:200550..203500- (Nannochloropsis oceanica)
GCTGCCTCGTAACCGACTCACATCAACTGTCCCCTGCAATGTCTTTCGTG
CCTTCCCCGCTCTACCCATCTCACGTACCGGCGCCACCACACACAGAGGC
TGATAATATACGCCCAAAACCTGCGACATAGAGAGCGGTACCGGAACTGC
TGCAAGCGCGGCCGTTAAAGTCCATCGATCTAATCACGAGAGTAATAACG
AGCGAGCGCGGATGAAGTGAGGCACGCAACAGGAACAGGAACACAAGACC
GAAACCCAACAGCAGCACCATGGCCAAGACCCGCCAATGGATCCTCTCAC
TCCTTGCTCACGTCCTTATCATACTCGCTAGCACGGCTGCTTTCTCCTCC
ATCCTCTCCCGATCGCCGCCCCATAGGCTCCCCTATCTTCATGCAATCAA
GCCAAGTGCGCCCCGTCGCTCTACGCTTCCGACCCAACATCTTCCGAGCC
ATGACGACACTTCCTCGCCCTCTTTCCGCTCTTACACCATCATTCCGCAT
TCCGTCTCCCCCTTGCTTCTTCGCCTCCGCCAAGCCACCGCACCCGTCAT
CCTCTCCCTCCTTAGCCTCCTTTGCGGCAGTGTCGGCATTGCTTCATTCT
CCCCCTCTGCTCCCGCCTCCGCCGCCACCACCTCTACGAGCACCACCCTC
CTTCCTTCTCCGCTCACCGTTCCTCGGGGAAGCGGTCAGACTTACTCTCA
AGCGATGGCCTCGACGGACCCCCAGCATGTCAAGGAGATCAACCGCCGCT
TTGCCCGGCACGTGTGGGCGACGATTGGCCTGTCCTTCTACGATAAAAGT
GGAGGGGGGATTTTAGGGGGCCGAGGAGGACATGACCCGGCCTGGGAGCG
AGTCTGGGCCGCGGCCGAGAAGAGAGGAGAGGGAGGTGTTGGAGGAGGAG
GAGGAAGCAAAGGATTTGAAACCGTGGAGGGGACGAGAGAGGTGATTCGG
TTCATGGTGGGGGAGTTGAAGGATGAGTATTCGGCATACATGGCACCACA
GGAGATCGGCGGACTTTTTCGTCGGTACCCGTCCAAGGCCCAACCGCAAT
TGGAACGGCCGGTGATTGCCCCGACGTCTTCCTCGTCTACAAGCACCATC
ACGGCGGCAACGACGACAACGACGAAACAAGGCAGCAGCAGTAGCGGCAA
CACCAAAGACGACAAGGCTGATGGAAGTATGTCCCTCTCGGCCTCAGTAG
GCATGCAGCTTGAGCCGGCCGCGTATTGCCCCCCTGCCACCATGCTTCAG
CCCCATTACAACGCTGCAACCAATATGTACGACTACCCCTCCCTCTCCCC
CTCCTCCTTCCCTTACCCCTCCTCCTCTTCCTCCGCTTTCACATGGCTCC
CTGCCTTCTTCCAGCCCTCCTTTCCTCCTTCTTACTCTCGGCCATGCGCT
GTAGTCGTGGGGGTCTTGCCCAACTCTCCCGCGGAGGAAGCAGGGATTCG
AATCGGCGACCGTGTGAGCAAAGTGGGCCATATCATGACTAAGAATACGG
CGGGCTGGGACCGAGACGGCACATTAGAAAATACGCTATTACAAGGGAAG
GAGGGAACGTCGATTCAAGTAGAGCTTATGCGGGTGGTGTCGGAGGGAGA
GAAGGAAGGGAGGGAACAGCGCGTGCCCTTGACATTGCGTCGTCGGTCGT
TTGCTTCAAGCAAGTACCCGGCAATGCGAGTTCAGTCTTTGTTAGACGAA
GAGGGTCGACGAGTCTGCTATATTCGCCTGCATCGCTTTGATGCCCCGGC
CACAGCGCAGCTCCGTTCGGTTCTGTACGCAGAAGAGCGCGTGGGCGCCG
AGGCTTATGTGATCGATTTGCGGAATAACATGGGAGGGATCTTTCAAGAA
AGTTTGAAGATGGCCGCCTTGTTTTTGCCGGACCCCAAGTCTGTGCTGTG
CTTTACGATGGATGCTTGGGGGGGTTATAGCGCGCATTTGGCTGAGGAGT
ACGATACGTCCGCCACCTTGCCCCTGACTGCGTCCGGCTCTCGTGCGAGT
GCTCGTGCCGCGGCCTTGCTGTTGGCTCGCGGTGAGTTTGGCGACAAGTG
GGCACCTTTGGTGTCCCCGAAGAAGCCTGTCGTAGTCTTAGTGAACAAGG
GCTCGGCGTCGTCCTCGGAAACTTTTGCAGCGGCGTTGCACGACAATGAC
CGGGCCTGGTTGGTTGGCGAACGGACATTTGGCAAGTCGCTGATTCAGCA
CTTGTTTCCCTTGCCGGACGGGGGGGCATTAAAGTTAACAGTGGCGGAAT
ATCTTACTCCTAAACAGCGACACTTGGCCCGGATTCGCCTGCCGGGACCC
ACACGAGGCCGCTCTGTGAGTGCTACGACTTTCAATGCAGGTAAGTGTTG
TAGCGGGGCACGGAGGAAAATAATGGGATTGAGACACACAGGAATAATCA
TACAAAGGCTCACATGCTTCTAACTATTGATCTACCTCTTGTTCTAACCA
TAAGGTTTGGAGCCAGATTTAGCCGTTGCTGACTCCACCCCACGGCCAAA
CAGCATGGACGATTCTGCGCTTACTCAAGCCCTGGACCTGCTGGCTAAAC
AGCCCTTCCCGGAAAGAGGGGGGGGAAGAGGGCAAGGAGAAGGGGGAGGA
AAGATTGTACACGCGGATGTCTTCTTGTCATTCCTTTCTCACTCGAATAG
AAAGTGAAGGGAAGAGGAGGCGGAGGTGGAGTCGTTCTTATGTAAAATTC
ACCCTGTAATATTATTTCTGTTCAATTTGATATTTCGCCTTGTGCTAGTA
ACATTTCTGCATGCCGGGCTTGTTAAAAAAACATTGATCAATATAGAAAT
ATATGGAATGGCTGCCTTCACGGCGCACGGTTCTATAGAGGGCTGAGAAG
GCAGGGCCTTTGGTTTTGCGGCCAGCTGGGATTAGGTTGCACATAAATTG
AAAGGAGTTCATTGAAACACCGATAAAGATATCGACAAAACGTTATACCA
A

Coding sequence (CDS) from alignment at scaffold_37:200550..203500-

>mRNA_9775 ID=mRNA_9775|Name=jgi.p|Nanoce1779_2|607187|organism=Nannochloropsis oceanica|type=CDS|length=2154bp|location=Sequence derived from alignment at scaffold_37:200550..203500- (Nannochloropsis oceanica)
ATGGCCAAGACCCGCCAATGGATCCTCTCACTCCTTGCTCACGTCCTTAT
CATACTCGCTAGCACGGCTGCTTTCTCCTCCATCCTCTCCCGATCGCCGC
CCCATAGGCTCCCCTATCTTCATGCAATCAAGCCAAGTGCGCCCCGTCGC
TCTACGCTTCCGACCCAACATCTTCCGAGCCATGACGACACTTCCTCGCC
CTCTTTCCGCTCTTACACCATCATTCCGCATTCCGTCTCCCCCTTGCTTC
TTCGCCTCCGCCAAGCCACCGCACCCGTCATCCTCTCCCTCCTTAGCCTC
CTTTGCGGCAGTGTCGGCATTGCTTCATTCTCCCCCTCTGCTCCCGCCTC
CGCCGCCACCACCTCTACGAGCACCACCCTCCTTCCTTCTCCGCTCACCG
TTCCTCGGGGAAGCGGTCAGACTTACTCTCAAGCGATGGCCTCGACGGAC
CCCCAGCATGTCAAGGAGATCAACCGCCGCTTTGCCCGGCACGTGTGGGC
GACGATTGGCCTGTCCTTCTACGATAAAAGTGGAGGGGGGATTTTAGGGG
GCCGAGGAGGACATGACCCGGCCTGGGAGCGAGTCTGGGCCGCGGCCGAG
AAGAGAGGAGAGGGAGGTGTTGGAGGAGGAGGAGGAAGCAAAGGATTTGA
AACCGTGGAGGGGACGAGAGAGGTGATTCGGTTCATGGTGGGGGAGTTGA
AGGATGAGTATTCGGCATACATGGCACCACAGGAGATCGGCGGACTTTTT
CGTCGGTACCCGTCCAAGGCCCAACCGCAATTGGAACGGCCGGTGATTGC
CCCGACGTCTTCCTCGTCTACAAGCACCATCACGGCGGCAACGACGACAA
CGACGAAACAAGGCAGCAGCAGTAGCGGCAACACCAAAGACGACAAGGCT
GATGGAAGTATGTCCCTCTCGGCCTCAGTAGGCATGCAGCTTGAGCCGGC
CGCGTATTGCCCCCCTGCCACCATGCTTCAGCCCCATTACAACGCTGCAA
CCAATATGTACGACTACCCCTCCCTCTCCCCCTCCTCCTTCCCTTACCCC
TCCTCCTCTTCCTCCGCTTTCACATGGCTCCCTGCCTTCTTCCAGCCCTC
CTTTCCTCCTTCTTACTCTCGGCCATGCGCTGTAGTCGTGGGGGTCTTGC
CCAACTCTCCCGCGGAGGAAGCAGGGATTCGAATCGGCGACCGTGTGAGC
AAAGTGGGCCATATCATGACTAAGAATACGGCGGGCTGGGACCGAGACGG
CACATTAGAAAATACGCTATTACAAGGGAAGGAGGGAACGTCGATTCAAG
TAGAGCTTATGCGGGTGGTGTCGGAGGGAGAGAAGGAAGGGAGGGAACAG
CGCGTGCCCTTGACATTGCGTCGTCGGTCGTTTGCTTCAAGCAAGTACCC
GGCAATGCGAGTTCAGTCTTTGTTAGACGAAGAGGGTCGACGAGTCTGCT
ATATTCGCCTGCATCGCTTTGATGCCCCGGCCACAGCGCAGCTCCGTTCG
GTTCTGTACGCAGAAGAGCGCGTGGGCGCCGAGGCTTATGTGATCGATTT
GCGGAATAACATGGGAGGGATCTTTCAAGAAAGTTTGAAGATGGCCGCCT
TGTTTTTGCCGGACCCCAAGTCTGTGCTGTGCTTTACGATGGATGCTTGG
GGGGGTTATAGCGCGCATTTGGCTGAGGAGTACGATACGTCCGCCACCTT
GCCCCTGACTGCGTCCGGCTCTCGTGCGAGTGCTCGTGCCGCGGCCTTGC
TGTTGGCTCGCGGTGAGTTTGGCGACAAGTGGGCACCTTTGGTGTCCCCG
AAGAAGCCTGTCGTAGTCTTAGTGAACAAGGGCTCGGCGTCGTCCTCGGA
AACTTTTGCAGCGGCGTTGCACGACAATGACCGGGCCTGGTTGGTTGGCG
AACGGACATTTGGCAAGTCGCTGATTCAGCACTTGTTTCCCTTGCCGGAC
GGGGGGGCATTAAAGTTAACAGTGGCGGAATATCTTACTCCTAAACAGCG
ACACTTGGCCCGGATTCGCCTGCCGGGACCCACACGAGGCCGCTCTGTGA
GTGCTACGACTTTCAATGCAGGTAAGTGTTGTAGCGGGGCACGGAGGAAA
ATAATGGGATTGAGACACACAGGAATAATCATACAAAGGCTCACATGCTT
CTAA

Synonyms

Publications