jgi.p|Nanoce1779_2|607182, mRNA_9773 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|607182
Unique NamemRNA_9773
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length460
Alignment locationscaffold_37:196759..197218 +

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Properties
Property NameValue
TranscriptId607268
TrackFilteredModels2
ProteinId607182
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_37supercontigscaffold_37:196759..197218 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|607182gene_9773Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|607182mRNA_9773-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9773CDS_9773Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9773 ID=mRNA_9773|Name=jgi.p|Nanoce1779_2|607182|organism=Nannochloropsis oceanica|type=mRNA|length=460bp
GTTGGAGTATTTTCTTTTTGGAGCTATAGGCGTAAACGAAAGGGTAGAAG
AAAGAGTAAGGAAGAGGGAGAAAGAGGAAAAGGGCCTTTGCTTCTTGTAC
AACAACCGGGACAGACTGCTCGAAGTCCCCATTTCTGACTTGGACATGCG
CCCTCTGAAATCGTGGGCCAAGGGAGACAGGTGGACGCAATACCTCTACT
TATCGCGGCAGGCAGCGCACCTTCTCTTCATTTTTACGGTCATCACCGGT
ACGAAGGGCGTCCTCTCCCCGTCTAGACTGACATTCGGGATGCTTATCCC
CACAAAAAGTATGAACGAACAAACATTCGAGGATTCTACGTCGTCATATT
CATGCACACGGACGGGTACGTGACGGCGGCGCGGCAGAACGGAACAAGTT
GCAGGAGGATGAGGAGGACTAGTCACAAATAGAGAAATACTTGATCTGTC
TTTTGTATTT
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protein sequence of jgi.p|Nanoce1779_2|607182

>mRNA_9773-protein ID=mRNA_9773-protein|Name=jgi.p|Nanoce1779_2|607182|organism=Nannochloropsis oceanica|type=polypeptide|length=76bp
MRPLKSWAKGDRWTQYLYLSRQAAHLLFIFTVITGTKGVLSPSRLTFGML
IPTKSMNEQTFEDSTSSYSCTRTGT*
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mRNA from alignment at scaffold_37:196759..197218+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9773 ID=mRNA_9773|Name=jgi.p|Nanoce1779_2|607182|organism=Nannochloropsis oceanica|type=mRNA|length=460bp|location=Sequence derived from alignment at scaffold_37:196759..197218+ (Nannochloropsis oceanica)
GTTGGAGTATTTTCTTTTTGGAGCTATAGGCGTAAACGAAAGGGTAGAAG
AAAGAGTAAGGAAGAGGGAGAAAGAGGAAAAGGGCCTTTGCTTCTTGTAC
AACAACCGGGACAGACTGCTCGAAGTCCCCATTTCTGACTTGGACATGCG
CCCTCTGAAATCGTGGGCCAAGGGAGACAGGTGGACGCAATACCTCTACT
TATCGCGGCAGGCAGCGCACCTTCTCTTCATTTTTACGGTCATCACCGGT
ACGAAGGGCGTCCTCTCCCCGTCTAGACTGACATTCGGGATGCTTATCCC
CACAAAAAGTATGAACGAACAAACATTCGAGGATTCTACGTCGTCATATT
CATGCACACGGACGGGTACGTGACGGCGGCGCGGCAGAACGGAACAAGTT
GCAGGAGGATGAGGAGGACTAGTCACAAATAGAGAAATACTTGATCTGTC
TTTTGTATTT
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Coding sequence (CDS) from alignment at scaffold_37:196759..197218+

>mRNA_9773 ID=mRNA_9773|Name=jgi.p|Nanoce1779_2|607182|organism=Nannochloropsis oceanica|type=CDS|length=228bp|location=Sequence derived from alignment at scaffold_37:196759..197218+ (Nannochloropsis oceanica)
ATGCGCCCTCTGAAATCGTGGGCCAAGGGAGACAGGTGGACGCAATACCT
CTACTTATCGCGGCAGGCAGCGCACCTTCTCTTCATTTTTACGGTCATCA
CCGGTACGAAGGGCGTCCTCTCCCCGTCTAGACTGACATTCGGGATGCTT
ATCCCCACAAAAAGTATGAACGAACAAACATTCGAGGATTCTACGTCGTC
ATATTCATGCACACGGACGGGTACGTGA
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Synonyms
Publications