jgi.p|Nanoce1779_2|574867, mRNA_977 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|574867
Unique NamemRNA_977
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1173
Alignment locationscaffold_2:908045..909684 +

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Properties
Property NameValue
TranscriptId574953
TrackFilteredModels2
ProteinId574867
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:908045..909684 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|574867gene_977Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|574867mRNA_977-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_977CDS_977Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_977 ID=mRNA_977|Name=jgi.p|Nanoce1779_2|574867|organism=Nannochloropsis oceanica|type=mRNA|length=1173bp
GCATTCAATAATGCGTCACAAACCTCAAATCTAGGAAAAAGAGGCATGGA
AACATGGAAACGTGGCATGCAGCAGGTCGTGTGGAGCTCGCACGCTGACC
TCTTTTCAGTTGCAAAGTTCGCTCACTTATTGTGCGGCACATGACTAGGC
CCCGCTCGCTCGCTATATCGTTTTCCTTGAGATGATGGTCCCTGTGATTG
AAACCCATCAATGGCAGCCAAGAGCGAGGCATGACATCACAGTTGTGACC
ACAACAACGAGAAGCTCAAGGACGCATACGCATGTCTTTTCCCTGGCCCT
TTCCCTTCTACACCCAACCGCCCACAGCAAAAACCATTCACGCCAGTCGT
CAGCCACCATCGTTACCGCTGGCACTCGCGGCCAGCTTCATCAAGGTCTT
TGAACCGCCAGATCTGTCCTCGTTATCGTCGGCCGTGCCCTCAAGAAAAT
AAATGGCGTTCATGCACGTAAAACGCTACCCCATGCTCTTCAAAGCCGTC
CTGCCTGGGACGCTTGCTATTGCCTGCGGCGACATGTTGTGTCAGCGGCT
GGAAGGGAAGATAGAGATTTGTCTAGAGCGGACAACACGAATGGCAATAA
CAGGAGCTTTGATCGTGACTCCATCAGCGTATTATTTGGGCTCCAAGATT
GAGCGCATCATTCCCAAAGCCAACACCACCTTCACCACCATCGCCAAAGC
TGGGCTTAATGCCACGTGCTCTGTCTTCTTCATCATCGGAAGCTTCTGTG
GAAACAACCTGTTACAAGGTCGTGGATTCGAGGTACTGCGTGCACAACTC
AGTGAGCGCCTCTTGCCCACCGCAGCCTCAGGTGTCGCATATTGGACAGG
CGCGAATCTCCTACTCTTTTCGGGGGTGGTCCCGCAATCCGTTGCTGCTA
CTGCTGCATTTTCCGTGTTATGGAATGTACGGATGAGCAGTGCATTGAAC
ATGAAGACGCCTGCATCGGAGACGGCATTGGCGAAGGAGGAGCGGAATCG
ACGGGTGAGTGCCATGCGGCTGGCAGTCGGGGGGTTGCAGAAGGAGAGTG
GTGGTGGGAGTGGCAGCAGCATAAGCAGTAGCACCAATAGAAGACGTGGT
GGTGGCAAGGCATGTGAGTCGCAAAATACCGAGTTGTTGCAGTAAGAGAT
CGGTCAATAGAAGACGTGGTGGT
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protein sequence of jgi.p|Nanoce1779_2|574867

>mRNA_977-protein ID=mRNA_977-protein|Name=jgi.p|Nanoce1779_2|574867|organism=Nannochloropsis oceanica|type=polypeptide|length=231bp
MAFMHVKRYPMLFKAVLPGTLAIACGDMLCQRLEGKIEICLERTTRMAIT
GALIVTPSAYYLGSKIERIIPKANTTFTTIAKAGLNATCSVFFIIGSFCG
NNLLQGRGFEVLRAQLSERLLPTAASGVAYWTGANLLLFSGVVPQSVAAT
AAFSVLWNVRMSSALNMKTPASETALAKEERNRRVSAMRLAVGGLQKESG
GGSGSSISSSTNRRRGGGKACESQNTELLQ*
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mRNA from alignment at scaffold_2:908045..909684+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_977 ID=mRNA_977|Name=jgi.p|Nanoce1779_2|574867|organism=Nannochloropsis oceanica|type=mRNA|length=1640bp|location=Sequence derived from alignment at scaffold_2:908045..909684+ (Nannochloropsis oceanica)
GCATTCAATAATGCGTCACAAACCTCAAATCTAGGAAAAAGAGGCATGGA
AACATGGAAACGTGGCATGCAGCAGGTCGTGTGGAGCTCGCACGCTGACC
TCTTTTCAGTTGCAAAGTTCGCTCACTTATTGTGCGGCACATGACTAGGC
CCCGCTCGCTCGCTATATCGTTTTCCTTGAGATGATGGTCCCTGTGATTG
AAACCCATCAATGGCAGCCAAGAGCGAGGCATGACATCACAGTTGTGACC
ACAACAACGAGAAGCTCAAGGACGCATACGCATGTCTTTTCCCTGGCCCT
TTCCCTTCTACACCCAACCGCCCACAGCAAAAACCATTCACGCCAGTCGT
CAGCCACCATCGTTACCGCTGGCACTCGCGGCCAGCTTCATCAAGGTGAG
CTTGTGGCCCAGGGCGCCAAGGGAGTGCTGGCGCCCCCTTTTCGTGCTGG
TGGGCCCTGAGCCCTTAAGGTCTGTGGGTTTTGAAACTGACTCTGCCCCA
TTTCTTTTATCCCATACACCCAGGTCTTTGAACCGCCAGATCTGTCCTCG
TTATCGTCGGCCGTGCCCTCAAGAAAATAAATGGCGTTCATGCACGTAAA
ACGCTACCCCATGCTCTTCAAAGCCGTCCTGCCTGGGACGCTTGCTATTG
CCTGCGGCGACATGTTGTGTCAGCGGCTGGAAGGGAAGATAGAGATTTGT
CTAGAGCGGACAACACGAATGGCAATAACAGGAGCTTTGATCGTGACTCC
ATCAGCGTATTATTTGGGCTCCAAGATTGAGCGCATCATTCCCAAAGGTA
AGCAGGGGATGGGGTGAAGATAAGAGCGGCCGAGTGATAGTGCTTTTTGT
GTGCACCTTCGTATTTTTAAGAATTGTAATTGGGGTGCGGTATATTCATG
ATGTGGATGGCTAGGTATGCATATGAAGGTTGATGCCTTTTCGTGTGCTT
GCGGATGACGGTCCTGGTAAATGGGAGGGAGGAGATGGGGGGGACGTTCT
CTGCCCCATCAGCCCAGTACGTCCTAGTCTACTTTGTTTTCCCCACCTCC
TTTTCCAAAGCCAAAGGATCCAATCACTCCAAAGCATATTTCGTTAATCC
CGTACTTACCCCCCTTCCTCCTTTCCGCTGTTGAAGCCAACACCACCTTC
ACCACCATCGCCAAAGCTGGGCTTAATGCCACGTGCTCTGTCTTCTTCAT
CATCGGAAGCTTCTGTGGAAACAACCTGTTACAAGGTCGTGGATTCGAGG
TACTGCGTGCACAACTCAGTGAGCGCCTCTTGCCCACCGCAGCCTCAGGT
GTCGCATATTGGACAGGCGCGAATCTCCTACTCTTTTCGGGGGTGGTCCC
GCAATCCGTTGCTGCTACTGCTGCATTTTCCGTGTTATGGAATGTACGGA
TGAGCAGTGCATTGAACATGAAGACGCCTGCATCGGAGACGGCATTGGCG
AAGGAGGAGCGGAATCGACGGGTGAGTGCCATGCGGCTGGCAGTCGGGGG
GTTGCAGAAGGAGAGTGGTGGTGGGAGTGGCAGCAGCATAAGCAGTAGCA
CCAATAGAAGACGTGGTGGTGGCAAGGCATGTGAGTCGCAAAATACCGAG
TTGTTGCAGTAAGAGATCGGTCAATAGAAGACGTGGTGGT
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Coding sequence (CDS) from alignment at scaffold_2:908045..909684+

>mRNA_977 ID=mRNA_977|Name=jgi.p|Nanoce1779_2|574867|organism=Nannochloropsis oceanica|type=CDS|length=1386bp|location=Sequence derived from alignment at scaffold_2:908045..909684+ (Nannochloropsis oceanica)
ATGGCGTTCATGCACGTAAAACGCTACCCCATGCTCTTCAAAGCCGTCCT
GCCTGGGACGCTTGCTATTGCCTGCGGCGACATGTTGTGTCAGCGGCTGG
AAGGGAAGATAGAGATTTGTCTAGAGCGGACAACACGAATGGCAATAACA
GGAGCTTTGATCGTGACTCCATCAGCGTATTATTTGGGCTCCAAGATTGA
GCGCATCATTCCCAAAGCCAACACCACCTTCACCACCATCGCCAAAGCTG
GGCTTAATGCCACGTGCTCTGTCTTCTTCATCATCGGAAGCTTCTGTGGA
AACAACCTGTTACAAGGTCGTGGATTCGAGGTACTGCGTGCACAACTCAG
TGAGCGCCTCTTGCCCACCGCAGCCTCAGGTGTCGCATATTGGACAGGCG
CGAATCTCCTACTCTTTTCGGGGGTGGTCCCGCAATCCGTTGCTGCTACT
GCTGCATTTTCCGTGTTATGGAATGTACGGATGAGCAGTGCATTGAACAT
GAAGACGCCTGCATCGGAGACGGCATTGGCGAAGGAGGAGCGGAATCGAC
GGGTGAGTGCCATGCGGCTGGCAGTCGGGGGGTTGCAGAAGGAGAGTGGT
GGTGGGAGTGGCAGCAGCATAAGCAGTAGCACCAATAGAAGACGTGGTGG
TGGCAAGGCATGTGAGTCGCAAAATACCGAGTTGTTGCAGTAAATGGCGT
TCATGCACGTAAAACGCTACCCCATGCTCTTCAAAGCCGTCCTGCCTGGG
ACGCTTGCTATTGCCTGCGGCGACATGTTGTGTCAGCGGCTGGAAGGGAA
GATAGAGATTTGTCTAGAGCGGACAACACGAATGGCAATAACAGGAGCTT
TGATCGTGACTCCATCAGCGTATTATTTGGGCTCCAAGATTGAGCGCATC
ATTCCCAAAGCCAACACCACCTTCACCACCATCGCCAAAGCTGGGCTTAA
TGCCACGTGCTCTGTCTTCTTCATCATCGGAAGCTTCTGTGGAAACAACC
TGTTACAAGGTCGTGGATTCGAGGTACTGCGTGCACAACTCAGTGAGCGC
CTCTTGCCCACCGCAGCCTCAGGTGTCGCATATTGGACAGGCGCGAATCT
CCTACTCTTTTCGGGGGTGGTCCCGCAATCCGTTGCTGCTACTGCTGCAT
TTTCCGTGTTATGGAATGTACGGATGAGCAGTGCATTGAACATGAAGACG
CCTGCATCGGAGACGGCATTGGCGAAGGAGGAGCGGAATCGACGGGTGAG
TGCCATGCGGCTGGCAGTCGGGGGGTTGCAGAAGGAGAGTGGTGGTGGGA
GTGGCAGCAGCATAAGCAGTAGCACCAATAGAAGACGTGGTGGTGGCAAG
GCATGTGAGTCGCAAAATACCGAGTTGTTGCAGTAA
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Synonyms
Publications