jgi.p|Nanoce1779_2|278409, mRNA_9769 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|278409
Unique NamemRNA_9769
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length776
Alignment locationscaffold_37:167521..168296 -

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Properties
Property NameValue
TranscriptId278495
TrackFilteredModels2
ProteinId278409
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_37supercontigscaffold_37:167521..168296 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|278409gene_9769Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|278409mRNA_9769-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9769CDS_9769Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9769 ID=mRNA_9769|Name=jgi.p|Nanoce1779_2|278409|organism=Nannochloropsis oceanica|type=mRNA|length=776bp
TTTCTTTTAGGCATGCAAAATATTAATTCCTTGTGGCAATCACCTAAATG
TGGCGTGTGCGTGCATTCTCCCTCAATATTACCATCTCCCAAAACTTAGC
AGCATGACCCCCTGCCCAAGACATACTACCACAATAATTGCACATATATG
ATGAGCATGATAATTGCACATATATGACATATATGGTGATTACTTACTCA
TTAATCTTCCTGTCCTTCATCTCCGTCCTTCCTCTTCCAGAAAAGTACAT
AGTCCGATCATCCTCTCCGTTTCCATTCCACTTTTCCCCCGTTTTCTTCG
AAGACACTCCTCACAGGAATCAAAGGGAGAACATGAACCAGGCTGGTCGC
TTACGTCCCTCATCAAACTCCATAGTGATCAATTCTGCCAACCTTTCACC
CCCTCCTTTCCTCCCGGTCCTCCCTACCCTACCTTTACTTCTGGGGAGGA
GACTACCATGCGACGTTTCCCCGCGGGAGGACAATCGCAGAAAAGGATGG
GGCAGGTACGCGGGCCGTTGGGGCAAATGGATGTACTTACAGGGACGAAG
GAGGGGAAGTCCTGGGAGGAGGGAGGAAGGAGGGAAAGATGTGAGACTCG
CAGAAGAGAGTGAGATACGGTTCCATAAGTAGACCAGCCTTATTTAAATT
ATTACTGTAACGCATGAAGACCCTCCCCCGACGGTAGAATAAATAGCAAC
TTACTATATATAGTTTCCTTTTCGCCTTCTTATGAAATTTATCAACTGAG
TGTATAAATTTCCATTTTGAAAGGGT
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protein sequence of jgi.p|Nanoce1779_2|278409

>mRNA_9769-protein ID=mRNA_9769-protein|Name=jgi.p|Nanoce1779_2|278409|organism=Nannochloropsis oceanica|type=polypeptide|length=153bp
MTYMVITYSLIFLSFISVLPLPEKYIVRSSSPFPFHFSPVFFEDTPHRNQ
RENMNQAGRLRPSSNSIVINSANLSPPPFLPVLPTLPLLLGRRLPCDVSP
REDNRRKGWGRYAGRWGKWMYLQGRRRGSPGRREEGGKDVRLAEESEIRF
HK*
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mRNA from alignment at scaffold_37:167521..168296-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9769 ID=mRNA_9769|Name=jgi.p|Nanoce1779_2|278409|organism=Nannochloropsis oceanica|type=mRNA|length=776bp|location=Sequence derived from alignment at scaffold_37:167521..168296- (Nannochloropsis oceanica)
TTTCTTTTAGGCATGCAAAATATTAATTCCTTGTGGCAATCACCTAAATG
TGGCGTGTGCGTGCATTCTCCCTCAATATTACCATCTCCCAAAACTTAGC
AGCATGACCCCCTGCCCAAGACATACTACCACAATAATTGCACATATATG
ATGAGCATGATAATTGCACATATATGACATATATGGTGATTACTTACTCA
TTAATCTTCCTGTCCTTCATCTCCGTCCTTCCTCTTCCAGAAAAGTACAT
AGTCCGATCATCCTCTCCGTTTCCATTCCACTTTTCCCCCGTTTTCTTCG
AAGACACTCCTCACAGGAATCAAAGGGAGAACATGAACCAGGCTGGTCGC
TTACGTCCCTCATCAAACTCCATAGTGATCAATTCTGCCAACCTTTCACC
CCCTCCTTTCCTCCCGGTCCTCCCTACCCTACCTTTACTTCTGGGGAGGA
GACTACCATGCGACGTTTCCCCGCGGGAGGACAATCGCAGAAAAGGATGG
GGCAGGTACGCGGGCCGTTGGGGCAAATGGATGTACTTACAGGGACGAAG
GAGGGGAAGTCCTGGGAGGAGGGAGGAAGGAGGGAAAGATGTGAGACTCG
CAGAAGAGAGTGAGATACGGTTCCATAAGTAGACCAGCCTTATTTAAATT
ATTACTGTAACGCATGAAGACCCTCCCCCGACGGTAGAATAAATAGCAAC
TTACTATATATAGTTTCCTTTTCGCCTTCTTATGAAATTTATCAACTGAG
TGTATAAATTTCCATTTTGAAAGGGT
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Coding sequence (CDS) from alignment at scaffold_37:167521..168296-

>mRNA_9769 ID=mRNA_9769|Name=jgi.p|Nanoce1779_2|278409|organism=Nannochloropsis oceanica|type=CDS|length=459bp|location=Sequence derived from alignment at scaffold_37:167521..168296- (Nannochloropsis oceanica)
ATGACATATATGGTGATTACTTACTCATTAATCTTCCTGTCCTTCATCTC
CGTCCTTCCTCTTCCAGAAAAGTACATAGTCCGATCATCCTCTCCGTTTC
CATTCCACTTTTCCCCCGTTTTCTTCGAAGACACTCCTCACAGGAATCAA
AGGGAGAACATGAACCAGGCTGGTCGCTTACGTCCCTCATCAAACTCCAT
AGTGATCAATTCTGCCAACCTTTCACCCCCTCCTTTCCTCCCGGTCCTCC
CTACCCTACCTTTACTTCTGGGGAGGAGACTACCATGCGACGTTTCCCCG
CGGGAGGACAATCGCAGAAAAGGATGGGGCAGGTACGCGGGCCGTTGGGG
CAAATGGATGTACTTACAGGGACGAAGGAGGGGAAGTCCTGGGAGGAGGG
AGGAAGGAGGGAAAGATGTGAGACTCGCAGAAGAGAGTGAGATACGGTTC
CATAAGTAG
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Synonyms
Publications