jgi.p|Nanoce1779_2|624115, mRNA_9767 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|624115
Unique NamemRNA_9767
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length672
Alignment locationscaffold_37:160985..162354 +

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Properties
Property NameValue
TranscriptId624201
TrackFilteredModels2
ProteinId624115
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_37supercontigscaffold_37:160985..162354 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|624115gene_9767Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|624115mRNA_9767-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9767CDS_9767Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9767 ID=mRNA_9767|Name=jgi.p|Nanoce1779_2|624115|organism=Nannochloropsis oceanica|type=mRNA|length=672bp
ATGCACGCCAACTGGCTCTTCCAAAAATCGGCCCCCATCATCCTTCCCGT
TAACCTCGGCTCCCTCGGCTTCCTCCTCCCCTTCGAGTATGAAGACATCT
ACCCCACTGTCGAGCGTGTGCTGACTCAGGACGTGAGTTTAACCCTGAGG
ATGCGTCTCCGTTGTCGAATCATCCGAAACGGCAGCGTCGTTATGGACCT
GGCCGTGATGAATGATGCCGTCGTGGAAAGAGGCTCCTCCCCCTACCTGG
CCTCCCTCGACTGTTTCTGTAACGACCAGTACGTCACCACCGTCCAAGCC
GACGGTCTCATCATCGCCACACCAACAGGCTCTACGGCCTACAGCATGTC
CGCCGGCGGCTCCATGGTACATCCGGGTATCCAAGCCCTGCTCCTCACCC
CCATCTGCCCCCACTCCCTCTCCTTCCGTCCTTTGATCTTCCCCGACTCG
GCCGTCATTTCCCTGTGCATGCCCAAAGATGTGAGGTCGCATGCGTGGGT
CTCCTTCGACGGCCGCTTCCGACACCGCCTCATGGACGGAGACGTGCTCG
AGGTCTCCACCTCGGAGTACCCACTCCCCACCGTGACGCACCAGAACGTA
ACCGCCGACTGGTTTCGCGCCCTCAACAAGGCGTTCAACTTCAACATGCG
TACACGGCAAAAACCACTGTAG
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protein sequence of jgi.p|Nanoce1779_2|624115

>mRNA_9767-protein ID=mRNA_9767-protein|Name=jgi.p|Nanoce1779_2|624115|organism=Nannochloropsis oceanica|type=polypeptide|length=224bp
MHANWLFQKSAPIILPVNLGSLGFLLPFEYEDIYPTVERVLTQDVSLTLR
MRLRCRIIRNGSVVMDLAVMNDAVVERGSSPYLASLDCFCNDQYVTTVQA
DGLIIATPTGSTAYSMSAGGSMVHPGIQALLLTPICPHSLSFRPLIFPDS
AVISLCMPKDVRSHAWVSFDGRFRHRLMDGDVLEVSTSEYPLPTVTHQNV
TADWFRALNKAFNFNMRTRQKPL*
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mRNA from alignment at scaffold_37:160985..162354+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9767 ID=mRNA_9767|Name=jgi.p|Nanoce1779_2|624115|organism=Nannochloropsis oceanica|type=mRNA|length=1370bp|location=Sequence derived from alignment at scaffold_37:160985..162354+ (Nannochloropsis oceanica)
ATGCACGCCAACTGGCTCTTCCAAAAATCGGCCCCCATCATCCTTCCCGT
TAACCTCGGCTCCCTCGGTACCTCCCTCCTTCCCTCCTTCCCTCCTTCCC
TCCCTCCCTCTCTACCTACCTACCTACCTACCTACCTCTCTCCCTCCCTC
CCTCCCTCCCTCCCTCCCTCCCTTCTACCTCTCGTCTTTCTTAGATGCCC
CCTCCCCCCCTCCCTTCCTCCCTCCCTCCCTCCCCCCCTCCCTCCCTCCT
ACCTCTCGTCTTGCTTAGATCCCCCCTCTCTCCCTTCCTCCCTTCTTCCC
TCCCTCCCCCCGCAGGCTTCCTCCTCCCCTTCGAGTATGAAGACATCTAC
CCCACTGTCGAGCGTGTGCTGACTCAGGACGTGAGTTTAACCCTGAGGAT
GCGTCTCCGTTGTCGAATCATCCGAAACGGCAGCGTCGTTATGGACCTGG
CCGTGATGAATGATGCCGTCGTGGAAAGAGGTACGTCCCTCCTCCCTCCC
TCCCTCCTTCCCTCCTTCCCTCCCTCCCTCACTCCCCCCCTCACTCACTC
CCTTCGTCTCGACTTTCCATTCGTTGCTGTCCTGTCCTGTGCTATTCGCA
GGCCCTCTCTTCGTCACACTCACTAAACACCCTCCCTCCCTCCCACCCTC
CCTCCCTCCCTACCTCTGTCGCACAAGGCTCCTCCCCCTACCTGGCCTCC
CTCGACTGTTTCTGTAACGACCAGTACGTCACCACCGTCCAAGCCGACGG
TCTCATCATCGCCACACCAACAGGTAGGTTCTCCCTCTCTCCCGCCCTCC
CTCCCTCCCTCAGCCGCTCACCGCCTTCCCTCCCTCCCCCCCTTCCCCCC
TCCAGGCTCTACGGCCTACAGCATGTCCGCCGGCGGCTCCATGGTACATC
CGGGTATCCAAGCCCTGCTCCTCACCCCCATCTGCCCCCACTCCCTCTCC
TTCCGTCCTTTGATCTTCCCCGACTCGGCCGTCATTTCCCTGTGCATGCC
CAAAGATGTGAGGTCGCATGCGTGGGTCTCCTTCGACGGCCGCTTCCGAC
ACCGCCTCATGGACGGAGACGTGCTCGAGGTAGGTTTGACCCCTCCCTCC
CCCCTCTCTCCCGTCCTCCCTCCCTCCCTTCTCCTTGTCTCATTTCCAAT
CATCTTCTCTTCCTTTCTCCCTCCCTCCCTCTCTTCTTCCCTCCCTCCCT
CCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCTCTCCCTCCCAAG
GTCTCCACCTCGGAGTACCCACTCCCCACCGTGACGCACCAGAACGTAAC
CGCCGACTGGTTTCGCGCCCTCAACAAGGCGTTCAACTTCAACATGCGTA
CACGGCAAAAACCACTGTAG
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Coding sequence (CDS) from alignment at scaffold_37:160985..162354+

>mRNA_9767 ID=mRNA_9767|Name=jgi.p|Nanoce1779_2|624115|organism=Nannochloropsis oceanica|type=CDS|length=3360bp|location=Sequence derived from alignment at scaffold_37:160985..162354+ (Nannochloropsis oceanica)
ATGCACGCCAACTGGCTCTTCCAAAAATCGGCCCCCATCATCCTTCCCGT
TAACCTCGGCTCCCTCGGCTTCCTCCTCCCCTTCGAGTATGAAGACATCT
ACCCCACTGTCGAGCGTGTGCTGACTCAGGACGTGAGTTTAACCCTGAGG
ATGCGTCTCCGTTGTCGAATCATCCGAAACGGCAGCGTCGTTATGGACCT
GGCCGTGATGAATGATGCCGTCGTGGAAAGAGGCTCCTCCCCCTACCTGG
CCTCCCTCGACTGTTTCTGTAACGACCAGTACGTCACCACCGTCCAAGCC
GACGGTCTCATCATCGCCACACCAACAGGCTCTACGGCCTACAGCATGTC
CGCCGGCGGCTCCATGGTACATCCGGGTATCCAAGCCCTGCTCCTCACCC
CCATCTGCCCCCACTCCCTCTCCTTCCGTCCTTTGATCTTCCCCGACTCG
GCCGTCATTTCCCTGTGCATGCCCAAAGATGTGAGGTCGCATGCGTGGGT
CTCCTTCGACGGCCGCTTCCGACACCGCCTCATGGACGGAGACGTGCTCG
AGGTCTCCACCTCGGAGTACCCACTCCCCACCGTGACGCACCAGAACGTA
ACCGCCGACTGGTTTCGCGCCCTCAACAAGGCGTTCAACTTCAACATGCG
TACACGGCAAAAACCACTGTAGATGCACGCCAACTGGCTCTTCCAAAAAT
CGGCCCCCATCATCCTTCCCGTTAACCTCGGCTCCCTCGGCTTCCTCCTC
CCCTTCGAGTATGAAGACATCTACCCCACTGTCGAGCGTGTGCTGACTCA
GGACGTGAGTTTAACCCTGAGGATGCGTCTCCGTTGTCGAATCATCCGAA
ACGGCAGCGTCGTTATGGACCTGGCCGTGATGAATGATGCCGTCGTGGAA
AGAGGCTCCTCCCCCTACCTGGCCTCCCTCGACTGTTTCTGTAACGACCA
GTACGTCACCACCGTCCAAGCCGACGGTCTCATCATCGCCACACCAACAG
GCTCTACGGCCTACAGCATGTCCGCCGGCGGCTCCATGGTACATCCGGGT
ATCCAAGCCCTGCTCCTCACCCCCATCTGCCCCCACTCCCTCTCCTTCCG
TCCTTTGATCTTCCCCGACTCGGCCGTCATTTCCCTGTGCATGCCCAAAG
ATGTGAGGTCGCATGCGTGGGTCTCCTTCGACGGCCGCTTCCGACACCGC
CTCATGGACGGAGACGTGCTCGAGGTCTCCACCTCGGAGTACCCACTCCC
CACCGTGACGCACCAGAACGTAACCGCCGACTGGTTTCGCGCCCTCAACA
AGGCGTTCAACTTCAACATGCGTACACGGCAAAAACCACTGTAGATGCAC
GCCAACTGGCTCTTCCAAAAATCGGCCCCCATCATCCTTCCCGTTAACCT
CGGCTCCCTCGGCTTCCTCCTCCCCTTCGAGTATGAAGACATCTACCCCA
CTGTCGAGCGTGTGCTGACTCAGGACGTGAGTTTAACCCTGAGGATGCGT
CTCCGTTGTCGAATCATCCGAAACGGCAGCGTCGTTATGGACCTGGCCGT
GATGAATGATGCCGTCGTGGAAAGAGGCTCCTCCCCCTACCTGGCCTCCC
TCGACTGTTTCTGTAACGACCAGTACGTCACCACCGTCCAAGCCGACGGT
CTCATCATCGCCACACCAACAGGCTCTACGGCCTACAGCATGTCCGCCGG
CGGCTCCATGGTACATCCGGGTATCCAAGCCCTGCTCCTCACCCCCATCT
GCCCCCACTCCCTCTCCTTCCGTCCTTTGATCTTCCCCGACTCGGCCGTC
ATTTCCCTGTGCATGCCCAAAGATGTGAGGTCGCATGCGTGGGTCTCCTT
CGACGGCCGCTTCCGACACCGCCTCATGGACGGAGACGTGCTCGAGGTCT
CCACCTCGGAGTACCCACTCCCCACCGTGACGCACCAGAACGTAACCGCC
GACTGGTTTCGCGCCCTCAACAAGGCGTTCAACTTCAACATGCGTACACG
GCAAAAACCACTGTAGATGCACGCCAACTGGCTCTTCCAAAAATCGGCCC
CCATCATCCTTCCCGTTAACCTCGGCTCCCTCGGCTTCCTCCTCCCCTTC
GAGTATGAAGACATCTACCCCACTGTCGAGCGTGTGCTGACTCAGGACGT
GAGTTTAACCCTGAGGATGCGTCTCCGTTGTCGAATCATCCGAAACGGCA
GCGTCGTTATGGACCTGGCCGTGATGAATGATGCCGTCGTGGAAAGAGGC
TCCTCCCCCTACCTGGCCTCCCTCGACTGTTTCTGTAACGACCAGTACGT
CACCACCGTCCAAGCCGACGGTCTCATCATCGCCACACCAACAGGCTCTA
CGGCCTACAGCATGTCCGCCGGCGGCTCCATGGTACATCCGGGTATCCAA
GCCCTGCTCCTCACCCCCATCTGCCCCCACTCCCTCTCCTTCCGTCCTTT
GATCTTCCCCGACTCGGCCGTCATTTCCCTGTGCATGCCCAAAGATGTGA
GGTCGCATGCGTGGGTCTCCTTCGACGGCCGCTTCCGACACCGCCTCATG
GACGGAGACGTGCTCGAGGTCTCCACCTCGGAGTACCCACTCCCCACCGT
GACGCACCAGAACGTAACCGCCGACTGGTTTCGCGCCCTCAACAAGGCGT
TCAACTTCAACATGCGTACACGGCAAAAACCACTGTAGATGCACGCCAAC
TGGCTCTTCCAAAAATCGGCCCCCATCATCCTTCCCGTTAACCTCGGCTC
CCTCGGCTTCCTCCTCCCCTTCGAGTATGAAGACATCTACCCCACTGTCG
AGCGTGTGCTGACTCAGGACGTGAGTTTAACCCTGAGGATGCGTCTCCGT
TGTCGAATCATCCGAAACGGCAGCGTCGTTATGGACCTGGCCGTGATGAA
TGATGCCGTCGTGGAAAGAGGCTCCTCCCCCTACCTGGCCTCCCTCGACT
GTTTCTGTAACGACCAGTACGTCACCACCGTCCAAGCCGACGGTCTCATC
ATCGCCACACCAACAGGCTCTACGGCCTACAGCATGTCCGCCGGCGGCTC
CATGGTACATCCGGGTATCCAAGCCCTGCTCCTCACCCCCATCTGCCCCC
ACTCCCTCTCCTTCCGTCCTTTGATCTTCCCCGACTCGGCCGTCATTTCC
CTGTGCATGCCCAAAGATGTGAGGTCGCATGCGTGGGTCTCCTTCGACGG
CCGCTTCCGACACCGCCTCATGGACGGAGACGTGCTCGAGGTCTCCACCT
CGGAGTACCCACTCCCCACCGTGACGCACCAGAACGTAACCGCCGACTGG
TTTCGCGCCCTCAACAAGGCGTTCAACTTCAACATGCGTACACGGCAAAA
ACCACTGTAG
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Synonyms
Publications