jgi.p|Nanoce1779_2|277365, mRNA_9762 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|277365
Unique Name	mRNA_9762
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1036
Alignment location	scaffold_37:138514..140533 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	277451
Track	FilteredModels2
ProteinId	277365

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_37	supercontig	scaffold_37:138514..140533 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|277365	gene_9762	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|277365	mRNA_9762-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_9762	CDS_9762	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_37:138514..140533+
coding sequence from alignment at scaffold_37:138514..140533+

mRNA sequence

>mRNA_9762 ID=mRNA_9762|Name=jgi.p|Nanoce1779_2|277365|organism=Nannochloropsis oceanica|type=mRNA|length=1036bp
AGGTAACGAAAACTCCTGACCAGAAAAACTCGTGCTGATTCACTCTGCGT
CTCAGTCTCTCACATTTTCCTACCAGCTCAAATAAGAGCCGGTAGCCGCT
CACTTCCAAGGAAGGCGCAAGCTTCCATCACGCTCGCCTACTCTGCCTCT
TGCACCCAAATGGCCGTTGTCGCCGTCCGCCTCGCCCTGCCTGTCATACC
TCTGATTAGCAGGCACTCCCGATCAAGATGCCCCCCGGTCATTGTGCTGC
ATCCTTCTCGTCATTCGTCTACTCCCTCCATCTTCATCTTACATTTGCTT
GTGTCTAGGCACGGCGGCCCACAGAACGAAGTCTGTTTACACCTCACCTG
AATCGTTTCTACCTACGCACACAACCCCCTAGAATATCCTCGCAGGGAAA
ACAGTCAGCTTGTTCTGTCCTCTCCTCTAAGGAAGAGCAGCGTACGAGCC
ACCCTCTCACCAGACTCACAACAATGTCTGAGAAATTATATGCAGGCGCC
CTCCCTGGAGATGTTGTTTGTATCAGCGGGTACCTACAGAAAAAGACTCG
GGACGGCCGGTGGCAAAAGCGTTGGTTTGAGACTAACGGCTGCTTTCTGA
CTTACTATAAGTCCAAGAGGATGACCAAGCTGCTGGCCGCCTTGGACCTG
GTGCAGGTGGGCACCATCAAAATCACTGAAGAGCCGGAGCCGGGAGACGA
GGCCGATATAGGCAGCCTCTTGTCCATCGAATTGAACGGGCGCGTCTACA
CACTGAAGGCGGCAAACGAAGAGCAGGCGAAGAAGTGGGTGGATGTCTTG
AACCAGCTCAAGATTGGCGGAAGTGACGTAATGCCTACCAGTGCCGGGAA
TACGGTCACGAGCGGCGTAGAGATTGACGCGGGGGGCGGGCGAGACAGAG
TGGAAGGTGAGGAGGAGGGAGAGAGAGAGGGAAGCAGGGACGTCAAAACG
ACGCGATAGAGCGATCTGGCGAACAAATCACCTTATTCAAAAAGGGGTGA
GGACATTTTTGTTTGTGTCGAGTCGACATGCGACTT

protein sequence of jgi.p|Nanoce1779_2|277365

>mRNA_9762-protein ID=mRNA_9762-protein|Name=jgi.p|Nanoce1779_2|277365|organism=Nannochloropsis oceanica|type=polypeptide|length=162bp
MSEKLYAGALPGDVVCISGYLQKKTRDGRWQKRWFETNGCFLTYYKSKRM
TKLLAALDLVQVGTIKITEEPEPGDEADIGSLLSIELNGRVYTLKAANEE
QAKKWVDVLNQLKIGGSDVMPTSAGNTVTSGVEIDAGGGRDRVEGEEEGE
REGSRDVKTTR*

mRNA from alignment at scaffold_37:138514..140533+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9762 ID=mRNA_9762|Name=jgi.p|Nanoce1779_2|277365|organism=Nannochloropsis oceanica|type=mRNA|length=2020bp|location=Sequence derived from alignment at scaffold_37:138514..140533+ (Nannochloropsis oceanica)
AGGTAACGAAAACTCCTGACCAGAAAAACTCGTGCTGATTCACTCTGCGT
CTCAGTCTCTCACATTTTCCTACCAGCTCAAATAAGAGCCGGTAGCCGCT
CACTTCCAAGGAAGGCGCAAGCTTCCATCACGCTCGCCTACTCTGCCTCT
TGCACCCAAATGGCCGTTGTCGCCGTCCGCCTCGCCCTGCCTGTCATACC
TCTGATTAGCAGGCACTCCCGATCAAGATGCCCCCCGGTCATTGTGCTGC
ATCCTTCTCGTCATTCGTCTACTCCCTCCATCTTCATCTTACATTTGCTT
GTGTCTAGGCACGGCGGCCCACAGAACGAAGTCTGTTTACACCTCACCTG
AATCGTTTCTACCTACGCACACAACCCCCTAGAATATCCTCGCAGGGAAA
ACAGTCAGCTTGTTCTGTCCTCTCCTCTAAGGAAGAGCAGCGTACGAGCC
ACCCTCTCACCAGACTCACAACAATGTCTGAGAAATTATGTACGTGCTCC
TCATTCACTCGCATTCTCTCTTCAATCCATTTACTCACCCATTACCTCAA
AATTCTCTTTAATAGATGCAGGCGCCCTCCCTGGAGATGTTGTTTGTATC
AGCGGGTAGGTATGTCAATCTTAGATGTGGATAATATCTCTGTGGGTGTA
ACTACATGTGCTGCATGGATTAATTTAGCGTCCCCGGATGACGATCAGAG
TATCCCTGTATTGCTAATTTGACGGGAGGCTGCCGGTATCAAATGCTTCC
GATCCCTCCTTCTCTCCCCTTTTAACGTCCTCCCTGCTTCCTTTGCCTCC
TTTTTCCATTCTATTTTGTCACCATTCCTCCATCTTTCCCTCCCTCCCAC
CCTCCCTCCTTTGGCAGGTACCTACAGAAAAAGACTCGGGACGGCCGGTG
GCAAAAGCGTTGGTTTGAGACTAACGGCTGCTTTCTGACTTACTATAAGG
TCAGGAGGGAGGAAGGGAAGGGGAAGGGAGGGAGGGGAGGGAAGGAGAAA
GAGTGAGGGAGAGGGGGGGGGGGGTTCAAAACAATTGGACATGTATTGAC
ATGTTACAACACGAGGGAGGCTGGGAGGGAGGGAGGGGAGGAGGGAAAGG
AAGAAGCGAAGGTGGGATGTCTTGCAAGTGGAAGGAGGGAAGGGCAGGGA
TTTGGGAACTAGGGATGGGAGGGTACGGTGGTCGCTAGCAGGGCGCCTAC
TTGCGTGCCTTTGAATCAATTATCCTCCTCCTCCCCATTCTGCGTGATCC
ATTCACCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTTCCCTCCCTC
CTTCTTATCGGCAGTCCAAGAGGATGACCAAGCTGCTGGCCGCCTTGGAC
CTGGTGCAGGTGGGCACCATCAAAATCACTGAAGAGCCGGAGCCGGGAGG
TAGGGGGGGAGGGAGAGAAAAAGGGAAGAGGAAAGAAGGGATTCAGAGGG
AGGAGTTTTGTGGCAAAGCGAAATTATTTGGGTTCTGATTATGTATCGAC
CACGCCACTTCTTGCCTCCCTGCCTCCCTTCCCCCCTCCCTCCCTCCCTC
CCTCCCTCCCTCCCTCCCTTCCCTAGACGAGGCCGATATAGGCAGCCTCT
TGTCCATCGAATTGAACGGGCGCGTCTACACACTGAAGGCGGCAAACGAA
GAGCAGGCGAAGAAGTGGGTGGATGTCTTGAACCAGCTCAAGGTGCGGAG
GGAGGGAGGGAACGAGGGAACGAGGGAACGATGCATGCAAGTCCACCTTG
ACCGAGATATTCAACATCCTCTCCCTCTCTCCCTCCTTTCCTCTAGATTG
GCGGAAGTGACGTAATGCCTACCAGTGCCGGGAATACGGTCACGAGCGGC
GTAGAGATTGACGCGGGGGGCGGGCGAGACAGAGTGGAAGGTGAGGAGGA
GGGAGAGAGAGAGGGAAGCAGGGACGTCAAAACGACGCGATAGAGCGATC
TGGCGAACAAATCACCTTATTCAAAAAGGGGTGAGGACATTTTTGTTTGT
GTCGAGTCGACATGCGACTT

Coding sequence (CDS) from alignment at scaffold_37:138514..140533+

>mRNA_9762 ID=mRNA_9762|Name=jgi.p|Nanoce1779_2|277365|organism=Nannochloropsis oceanica|type=CDS|length=2916bp|location=Sequence derived from alignment at scaffold_37:138514..140533+ (Nannochloropsis oceanica)
ATGTCTGAGAAATTATATGCAGGCGCCCTCCCTGGAGATGTTGTTTGTAT
CAGCGGGTACCTACAGAAAAAGACTCGGGACGGCCGGTGGCAAAAGCGTT
GGTTTGAGACTAACGGCTGCTTTCTGACTTACTATAAGTCCAAGAGGATG
ACCAAGCTGCTGGCCGCCTTGGACCTGGTGCAGGTGGGCACCATCAAAAT
CACTGAAGAGCCGGAGCCGGGAGACGAGGCCGATATAGGCAGCCTCTTGT
CCATCGAATTGAACGGGCGCGTCTACACACTGAAGGCGGCAAACGAAGAG
CAGGCGAAGAAGTGGGTGGATGTCTTGAACCAGCTCAAGATTGGCGGAAG
TGACGTAATGCCTACCAGTGCCGGGAATACGGTCACGAGCGGCGTAGAGA
TTGACGCGGGGGGCGGGCGAGACAGAGTGGAAGGTGAGGAGGAGGGAGAG
AGAGAGGGAAGCAGGGACGTCAAAACGACGCGATAGATGTCTGAGAAATT
ATATGCAGGCGCCCTCCCTGGAGATGTTGTTTGTATCAGCGGGTACCTAC
AGAAAAAGACTCGGGACGGCCGGTGGCAAAAGCGTTGGTTTGAGACTAAC
GGCTGCTTTCTGACTTACTATAAGTCCAAGAGGATGACCAAGCTGCTGGC
CGCCTTGGACCTGGTGCAGGTGGGCACCATCAAAATCACTGAAGAGCCGG
AGCCGGGAGACGAGGCCGATATAGGCAGCCTCTTGTCCATCGAATTGAAC
GGGCGCGTCTACACACTGAAGGCGGCAAACGAAGAGCAGGCGAAGAAGTG
GGTGGATGTCTTGAACCAGCTCAAGATTGGCGGAAGTGACGTAATGCCTA
CCAGTGCCGGGAATACGGTCACGAGCGGCGTAGAGATTGACGCGGGGGGC
GGGCGAGACAGAGTGGAAGGTGAGGAGGAGGGAGAGAGAGAGGGAAGCAG
GGACGTCAAAACGACGCGATAGATGTCTGAGAAATTATATGCAGGCGCCC
TCCCTGGAGATGTTGTTTGTATCAGCGGGTACCTACAGAAAAAGACTCGG
GACGGCCGGTGGCAAAAGCGTTGGTTTGAGACTAACGGCTGCTTTCTGAC
TTACTATAAGTCCAAGAGGATGACCAAGCTGCTGGCCGCCTTGGACCTGG
TGCAGGTGGGCACCATCAAAATCACTGAAGAGCCGGAGCCGGGAGACGAG
GCCGATATAGGCAGCCTCTTGTCCATCGAATTGAACGGGCGCGTCTACAC
ACTGAAGGCGGCAAACGAAGAGCAGGCGAAGAAGTGGGTGGATGTCTTGA
ACCAGCTCAAGATTGGCGGAAGTGACGTAATGCCTACCAGTGCCGGGAAT
ACGGTCACGAGCGGCGTAGAGATTGACGCGGGGGGCGGGCGAGACAGAGT
GGAAGGTGAGGAGGAGGGAGAGAGAGAGGGAAGCAGGGACGTCAAAACGA
CGCGATAGATGTCTGAGAAATTATATGCAGGCGCCCTCCCTGGAGATGTT
GTTTGTATCAGCGGGTACCTACAGAAAAAGACTCGGGACGGCCGGTGGCA
AAAGCGTTGGTTTGAGACTAACGGCTGCTTTCTGACTTACTATAAGTCCA
AGAGGATGACCAAGCTGCTGGCCGCCTTGGACCTGGTGCAGGTGGGCACC
ATCAAAATCACTGAAGAGCCGGAGCCGGGAGACGAGGCCGATATAGGCAG
CCTCTTGTCCATCGAATTGAACGGGCGCGTCTACACACTGAAGGCGGCAA
ACGAAGAGCAGGCGAAGAAGTGGGTGGATGTCTTGAACCAGCTCAAGATT
GGCGGAAGTGACGTAATGCCTACCAGTGCCGGGAATACGGTCACGAGCGG
CGTAGAGATTGACGCGGGGGGCGGGCGAGACAGAGTGGAAGGTGAGGAGG
AGGGAGAGAGAGAGGGAAGCAGGGACGTCAAAACGACGCGATAGATGTCT
GAGAAATTATATGCAGGCGCCCTCCCTGGAGATGTTGTTTGTATCAGCGG
GTACCTACAGAAAAAGACTCGGGACGGCCGGTGGCAAAAGCGTTGGTTTG
AGACTAACGGCTGCTTTCTGACTTACTATAAGTCCAAGAGGATGACCAAG
CTGCTGGCCGCCTTGGACCTGGTGCAGGTGGGCACCATCAAAATCACTGA
AGAGCCGGAGCCGGGAGACGAGGCCGATATAGGCAGCCTCTTGTCCATCG
AATTGAACGGGCGCGTCTACACACTGAAGGCGGCAAACGAAGAGCAGGCG
AAGAAGTGGGTGGATGTCTTGAACCAGCTCAAGATTGGCGGAAGTGACGT
AATGCCTACCAGTGCCGGGAATACGGTCACGAGCGGCGTAGAGATTGACG
CGGGGGGCGGGCGAGACAGAGTGGAAGGTGAGGAGGAGGGAGAGAGAGAG
GGAAGCAGGGACGTCAAAACGACGCGATAGATGTCTGAGAAATTATATGC
AGGCGCCCTCCCTGGAGATGTTGTTTGTATCAGCGGGTACCTACAGAAAA
AGACTCGGGACGGCCGGTGGCAAAAGCGTTGGTTTGAGACTAACGGCTGC
TTTCTGACTTACTATAAGTCCAAGAGGATGACCAAGCTGCTGGCCGCCTT
GGACCTGGTGCAGGTGGGCACCATCAAAATCACTGAAGAGCCGGAGCCGG
GAGACGAGGCCGATATAGGCAGCCTCTTGTCCATCGAATTGAACGGGCGC
GTCTACACACTGAAGGCGGCAAACGAAGAGCAGGCGAAGAAGTGGGTGGA
TGTCTTGAACCAGCTCAAGATTGGCGGAAGTGACGTAATGCCTACCAGTG
CCGGGAATACGGTCACGAGCGGCGTAGAGATTGACGCGGGGGGCGGGCGA
GACAGAGTGGAAGGTGAGGAGGAGGGAGAGAGAGAGGGAAGCAGGGACGT
CAAAACGACGCGATAG

Synonyms

Publications