jgi.p|Nanoce1779_2|607078, mRNA_9761 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|607078
Unique Name	mRNA_9761
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1013
Alignment location	scaffold_37:136737..138455 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	607164
Track	FilteredModels2
ProteinId	607078

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_37	supercontig	scaffold_37:136737..138455 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|607078	gene_9761	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|607078	mRNA_9761-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_9761	CDS_9761	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_37:136737..138455+
coding sequence from alignment at scaffold_37:136737..138455+

mRNA sequence

>mRNA_9761 ID=mRNA_9761|Name=jgi.p|Nanoce1779_2|607078|organism=Nannochloropsis oceanica|type=mRNA|length=1013bp
CTGACCGCATCGCGGGGCTGGTGGTAATGGATATTGCGCCTGTGACGTAC
AGTGTCACCGATGGCACCAACTGGCAAGACACGCATGAGGTCATCACCCT
CCTTTCCTCCCTCCCCCTCTCCACCCTCACGGACAAGGGCCAGGTCGACG
TGTTATTACAGGAAAAGGGGCTGACAGACGCCGGGATGCGGGCTTTTGCA
ATGACGAACCTCCTGCAGGGAGACGCGGGGGTGCAGTGGCAGATCAACTT
GGAGGGAATCAAGAGTGCTCTCCCTGAGATCGCTGCATTTGACGTGGGTG
GCGTAGACTCCTCTTCCTGCAGTGCCGCCTACCCCCATAAGACCCTCTTC
CTCAACGGCGGCAAAAGCAAATACCTGCGGACGGCACACTTGTCCACGAT
TGCCCAGCTATTCCCCACTTTCTCGCTAGCCACGATCCGCGACGCCGGCC
ACTGGGTCCACGCCGAGAAGCCCGAGGAAACGCTCAACATCATCCAGCGT
TACCTCGACGAGGAGCTCGAGGGCTGAGGGCGAAAGGTGAAGAGGGATGG
AGGAATGGAGGGATGGAGAGAGAAGAAGGGATGGAGAAGGGTGTAATAAT
AAGAGCAGCAGGAAAAAAGTTTCGTGTTGTAGGCATGTACGGTGCCTGAA
CGGAGGAATAGATGGAGGGAAGGATGTACAATTTTGAAGGGATAAGAGAC
ATGAAATACACGGCTTTTGGTGAGTGAGTGTGTCTGCATGTCAAAGTTGC
TGTGTATGAAGTTTAGCTGGCAGTGTGCTGGATCGTTTAGTCTATCGTGT
CCATGTCCATCTTTGATTGCCGGAGTGCTTGTCCAGTGTCCTAAGCCGCC
GACGATGCCGACGACGATGGGCCTTTAAAAAAAAGCAGTTGAGGGTCATT
ACTATTGCTGAGCGATGCAATAATCTTTCTTTTTTGAAATGGAGCTTTAT
GTCTCCAACATGCGAAAATCTGATCTGGAGAAAACCTTTCATGTGTCGTC
GAGTCGACAAATC

protein sequence of jgi.p|Nanoce1779_2|607078

>mRNA_9761-protein ID=mRNA_9761-protein|Name=jgi.p|Nanoce1779_2|607078|organism=Nannochloropsis oceanica|type=polypeptide|length=167bp
MDIAPVTYSVTDGTNWQDTHEVITLLSSLPLSTLTDKGQVDVLLQEKGLT
DAGMRAFAMTNLLQGDAGVQWQINLEGIKSALPEIAAFDVGGVDSSSCSA
AYPHKTLFLNGGKSKYLRTAHLSTIAQLFPTFSLATIRDAGHWVHAEKPE
ETLNIIQRYLDEELEG*

mRNA from alignment at scaffold_37:136737..138455+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9761 ID=mRNA_9761|Name=jgi.p|Nanoce1779_2|607078|organism=Nannochloropsis oceanica|type=mRNA|length=1719bp|location=Sequence derived from alignment at scaffold_37:136737..138455+ (Nannochloropsis oceanica)
CTGACCGCATCGCGGGGCTGGTGGTAATGGATATTGCGCCTGTGACGTAC
AGTGTCACCGATGGCACCAACTGGCAAGACACGCATGAGGTAGGGAGAAA
GGGAAGGAGGAAAGGAAGGAAGGAGGGAGGGAGGGAGGGAGGGAGGGAGG
GAGGGAGGGATAGGAACGGGTACCCTTACAGAGTTCATGCTGATACGACC
TCCTCCTCTTCTCCCTCCCTCCCTCCCTCCTTCTCTTTCTTCCCAGGTCA
TCACCCTCCTTTCCTCCCTCCCCCTCTCCACCCTCACGGACAAGGGCCAG
GTCGACGTGTTATTACAGGAAAAGGGGCTGACAGACGCCGGGATGCGGGC
TTTTGCAATGACGAACCTCCTGCAGGGAGACGCGGGGGTGCAGTGGCAGA
TCAACTTGGAGGGAATCAAGAGGTTGGTGGGCAGAGGGACGGAGGGAGGG
AGGGAGGGAGGATGACGAATAATGTGAGTGTGCGAGCCAAAGCAGAGTTT
GCATGGAACGGTGTCAAAAGGTACGTCTCCCTCCCTCCCTCCCTCCCTCC
CTCCTTTCCTCCTTATTTCCTTGATACCGAAAAATCACTGCTCTCTCACA
CACACCCTTTCGTTCCCTTCCTCCGCCCCTCTCTTCCCTCCCTCCCTCCC
TCCCTCCCTCCTCAGTGCTCTCCCTGAGATCGCTGCATTTGACGTGGGTG
GCGTAGACTCCTCTTCCTGCAGTGCCGCCTACCCCCATAAGACCCTCTTC
CTCAACGGCGGCAAAAGCAAATACCTGCGGACGGCACACTTGTCCACGAT
TGCCCAGCTATTCCCCACTTTCTCGCTAGGTACAAGAGAGGAGGGAGGGA
GCAAGGAGGAAGGGTGGGAAGGGGAGGGGGGGAGGGAGGAAGGGAGAGAG
CGCGGGATATGTACGTCTGGGGATAAGTTCCAGTGGGAAAGTCGATTGCA
ATCCTTTCCCCATCTAATTGTGGATGTCTGCTTCCGCTTTTCTAAACTCC
ATGCTCTCCTTTCTTCCTCCCTTTCCTTCCCTACCCTTCCCCTCCCTTCA
ACCCGAGAAATGCTGTGCTCATCTCTCTTCCTCCCTTTCTTAATCACCTC
TCTTCACTCCCCTGCTCTCCTTTCCTTCCCATCAGCCACGATCCGCGACG
CCGGCCACTGGGTCCACGCCGAGAAGCCCGAGGAAACGCTCAACATCATC
CAGCGTTACCTCGACGAGGAGCTCGAGGGCTGAGGGCGAAAGGTGAAGAG
GGATGGAGGAATGGAGGGATGGAGAGAGAAGAAGGGATGGAGAAGGGTGT
AATAATAAGAGCAGCAGGAAAAAAGTTTCGTGTTGTAGGCATGTACGGTG
CCTGAACGGAGGAATAGATGGAGGGAAGGATGTACAATTTTGAAGGGATA
AGAGACATGAAATACACGGCTTTTGGTGAGTGAGTGTGTCTGCATGTCAA
AGTTGCTGTGTATGAAGTTTAGCTGGCAGTGTGCTGGATCGTTTAGTCTA
TCGTGTCCATGTCCATCTTTGATTGCCGGAGTGCTTGTCCAGTGTCCTAA
GCCGCCGACGATGCCGACGACGATGGGCCTTTAAAAAAAAGCAGTTGAGG
GTCATTACTATTGCTGAGCGATGCAATAATCTTTCTTTTTTGAAATGGAG
CTTTATGTCTCCAACATGCGAAAATCTGATCTGGAGAAAACCTTTCATGT
GTCGTCGAGTCGACAAATC

Coding sequence (CDS) from alignment at scaffold_37:136737..138455+

>mRNA_9761 ID=mRNA_9761|Name=jgi.p|Nanoce1779_2|607078|organism=Nannochloropsis oceanica|type=CDS|length=2004bp|location=Sequence derived from alignment at scaffold_37:136737..138455+ (Nannochloropsis oceanica)
ATGGATATTGCGCCTGTGACGTACAGTGTCACCGATGGCACCAACTGGCA
AGACACGCATGAGGTCATCACCCTCCTTTCCTCCCTCCCCCTCTCCACCC
TCACGGACAAGGGCCAGGTCGACGTGTTATTACAGGAAAAGGGGCTGACA
GACGCCGGGATGCGGGCTTTTGCAATGACGAACCTCCTGCAGGGAGACGC
GGGGGTGCAGTGGCAGATCAACTTGGAGGGAATCAAGAGTGCTCTCCCTG
AGATCGCTGCATTTGACGTGGGTGGCGTAGACTCCTCTTCCTGCAGTGCC
GCCTACCCCCATAAGACCCTCTTCCTCAACGGCGGCAAAAGCAAATACCT
GCGGACGGCACACTTGTCCACGATTGCCCAGCTATTCCCCACTTTCTCGC
TAGCCACGATCCGCGACGCCGGCCACTGGGTCCACGCCGAGAAGCCCGAG
GAAACGCTCAACATCATCCAGCGTTACCTCGACGAGGAGCTCGAGGGCTG
AATGGATATTGCGCCTGTGACGTACAGTGTCACCGATGGCACCAACTGGC
AAGACACGCATGAGGTCATCACCCTCCTTTCCTCCCTCCCCCTCTCCACC
CTCACGGACAAGGGCCAGGTCGACGTGTTATTACAGGAAAAGGGGCTGAC
AGACGCCGGGATGCGGGCTTTTGCAATGACGAACCTCCTGCAGGGAGACG
CGGGGGTGCAGTGGCAGATCAACTTGGAGGGAATCAAGAGTGCTCTCCCT
GAGATCGCTGCATTTGACGTGGGTGGCGTAGACTCCTCTTCCTGCAGTGC
CGCCTACCCCCATAAGACCCTCTTCCTCAACGGCGGCAAAAGCAAATACC
TGCGGACGGCACACTTGTCCACGATTGCCCAGCTATTCCCCACTTTCTCG
CTAGCCACGATCCGCGACGCCGGCCACTGGGTCCACGCCGAGAAGCCCGA
GGAAACGCTCAACATCATCCAGCGTTACCTCGACGAGGAGCTCGAGGGCT
GAATGGATATTGCGCCTGTGACGTACAGTGTCACCGATGGCACCAACTGG
CAAGACACGCATGAGGTCATCACCCTCCTTTCCTCCCTCCCCCTCTCCAC
CCTCACGGACAAGGGCCAGGTCGACGTGTTATTACAGGAAAAGGGGCTGA
CAGACGCCGGGATGCGGGCTTTTGCAATGACGAACCTCCTGCAGGGAGAC
GCGGGGGTGCAGTGGCAGATCAACTTGGAGGGAATCAAGAGTGCTCTCCC
TGAGATCGCTGCATTTGACGTGGGTGGCGTAGACTCCTCTTCCTGCAGTG
CCGCCTACCCCCATAAGACCCTCTTCCTCAACGGCGGCAAAAGCAAATAC
CTGCGGACGGCACACTTGTCCACGATTGCCCAGCTATTCCCCACTTTCTC
GCTAGCCACGATCCGCGACGCCGGCCACTGGGTCCACGCCGAGAAGCCCG
AGGAAACGCTCAACATCATCCAGCGTTACCTCGACGAGGAGCTCGAGGGC
TGAATGGATATTGCGCCTGTGACGTACAGTGTCACCGATGGCACCAACTG
GCAAGACACGCATGAGGTCATCACCCTCCTTTCCTCCCTCCCCCTCTCCA
CCCTCACGGACAAGGGCCAGGTCGACGTGTTATTACAGGAAAAGGGGCTG
ACAGACGCCGGGATGCGGGCTTTTGCAATGACGAACCTCCTGCAGGGAGA
CGCGGGGGTGCAGTGGCAGATCAACTTGGAGGGAATCAAGAGTGCTCTCC
CTGAGATCGCTGCATTTGACGTGGGTGGCGTAGACTCCTCTTCCTGCAGT
GCCGCCTACCCCCATAAGACCCTCTTCCTCAACGGCGGCAAAAGCAAATA
CCTGCGGACGGCACACTTGTCCACGATTGCCCAGCTATTCCCCACTTTCT
CGCTAGCCACGATCCGCGACGCCGGCCACTGGGTCCACGCCGAGAAGCCC
GAGGAAACGCTCAACATCATCCAGCGTTACCTCGACGAGGAGCTCGAGGG
CTGA

Synonyms

Publications