jgi.p|Nanoce1779_2|607066, mRNA_9760 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|607066
Unique Name	mRNA_9760
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	590
Alignment location	scaffold_37:131639..136871 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	607152
Track	FilteredModels2
ProteinId	607066

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_37	supercontig	scaffold_37:131639..136871 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|607066	gene_9760	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|607066	mRNA_9760-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_9760	CDS_9760	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_37:131639..136871+
coding sequence from alignment at scaffold_37:131639..136871+

mRNA sequence

>mRNA_9760 ID=mRNA_9760|Name=jgi.p|Nanoce1779_2|607066|organism=Nannochloropsis oceanica|type=mRNA|length=590bp
AGGGAGGGAGGGAGGAAGGGAGGGAGGAAAGGATGAGTCCTCTCTCCCCT
CCCCTCCCTCCCTCCCTCCCTCCTTCCCACTCCCATGGAAGCACACATAT
TGCCTTGCGGGAGGCTGGATCCAGTCATTTCAAAGTGGTTAGCCCGATCA
CTCGCATTCACGACCTGTCCCCTCCCTCCCTTCCTTTCCTTCAGAGAAAT
GGTGCACGACGTGCTCCGGTTATTGGACGCCGAGGGAATCGGCAAGTGCG
TGGTGGTTGGCCACTCAATGGGGGGGAAAGTGGCAGCAGGTAGGGAGGGA
GGGAGGGGGGAAGGAGAAGGGGAGGAAGACGTGGAGGCATGTACATGGTA
TATATATATATCACAGCCATCTTCTCACTTCAGCAACTGTTCCTTCCTTC
CCTCTCCTTCCTTTTCCCCCCATCCTCCTTCTCCTAGCGGCTGGTCTCTC
CCACCCTGACCGCATCGCGGGGCTGGTGGTAATGGATATTGCGCCTGTGA
CGTACAGTGTCACCGATGGCACCAACTGGCAAGACACGCATGAGGTAGGG
AGAAAGGGAAGGAGGAAAGGAAGGAAGGAGGGAGGGAGGG

protein sequence of jgi.p|Nanoce1779_2|607066

>mRNA_9760-protein ID=mRNA_9760-protein|Name=jgi.p|Nanoce1779_2|607066|organism=Nannochloropsis oceanica|type=polypeptide|length=125bp
MEAHILPCGRLDPVISKWLARSLAFTTCPLPPFLSFREMVHDVLRLLDAE
GIGKCVVVGHSMGGKVAAGREGGRGEGEGEEDVEACTWYIYISQPSSHFS
NCSFLPSPSFSPHPPSPSGWSLPP*

mRNA from alignment at scaffold_37:131639..136871+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9760 ID=mRNA_9760|Name=jgi.p|Nanoce1779_2|607066|organism=Nannochloropsis oceanica|type=mRNA|length=5233bp|location=Sequence derived from alignment at scaffold_37:131639..136871+ (Nannochloropsis oceanica)
AGGGAGGGAGGGAGGAAGGGAGGGAGGAGTCGACTGAGCCGTCAGCTGCA
GGCGGGGGTCCTTCCTCCTCTTCGTCTCCACCACCCCCTCTCCCTCCTCA
TCACCCCTCCCTCCCTCGAGCTTCTGGACCTTCCCGCTGCCATCCCTCCT
CTTTGCCCTCCCTCTCTCCTTCCCTCCCTCCTTCCCTCTCTCCTGAATTA
CGCTCTCAGGGCCTTCAAATTTGGCTTGCGATTGTTGTCGGTTGAGGAGG
AGGAGGAGGAGGAGGAGGAAGAAGGGGGGGAGGGAGAGTTCGAAGAGGTG
GAGGGGGAGGAGGCGAATGTCATCTTGTCTTCAGCCCTGTGGAAATCCGT
AGCAGGGCTGTTATCAGCCTGTGCAGCAGCAACAGCAGCAGCAGCAACAG
CAACAGCAGCAGCAGCAGATGGGCTGAAAAAAGAGGGAGGGAAGGAGGAC
GGGGAGGAAGAGGAGGAGGAGGGAACGGGGACAGAACTCCTCCTGCTGGT
GGGTGTGGCTGCGGAGGTCATGTTGACAGAGTTACTCTCCTGTCCTGCTT
TCTCAGGAGAACAGGAGGGAGGTAGGGAGGAAGAGGGGGAAGGAGGGGCT
CGACGAGACTCTTTCTTGACGTCACCTTTTCCTTCTGCCGAGGAGGAAGG
GGAGGAGGGGTGGGAGGGGAGGGCCGCACAAGAAGCAAGCCAGCTGCAGC
AGCTGCAGCGACGACAAGCACAGAAGGGGCTCGAAGGATGGTTCTACATC
ACCGACGCCCTCCTCCACTCCCTTCCCCATCCTTCCTCCTTCAACCTCTT
GGCCAGTTGCACCGAGGCACCGCTACTCGCCCTCGCCGGACGCTTTCCCT
CCCTCCCTCCCTCCCTCCAGCTCCTTGTCTTCTCCACAGTCCGAGCACAC
CTGCAAGCCCGCGGAGGGAGGGGGAGAGAAAGGGAAGGGATTCCTTCCTC
GACACTCTTCCGGGTATTCGGACCTCTGGCCATGGAGGCGTTGGCTCTTC
CTCCTCCTCTTACTCCTTCCCCCCCCCCCCCCCCCCCCCTCCTCCTCCTC
CTTCTGTTCCGTCTTCTTCTTCGTCTTTAACGGCTGAAATAGGGGAAGAT
GGAACGGAGGGCAAAGAAGAGGAAGAAGAGGAAGAAGAGGAAGAAGAGGA
AGAAGAGAAGGATGAGGAGGACGACTGGGCCGGCTTCGAAAGCGCACCCC
CTCCTCCCCCTTCCTCCCTCCCTTCCTCTCTCCCCTCCTCGGCCTCCTCC
TCCCTCCTCATCACCCCTGAGCAAGAACCACTCCTCGCGGAAGCCCTCAA
AATTGTCGTCCTGGCTTTCACCCACCTCCCCTCCCCCCCTTCCTCCCTCC
CCATCCACCAAACCCGCCAGCTATCCCTTCTCCTCCCCCTCCTCGCTGCC
CTCCTCCCCGCCCTCCCTCCCTCCCTCTCCCTTCTCCCCCCCCTCGTCGG
CCAAGCCCTCCTCGGGATGGCGAAGCAGGCCCCTCTTCCCTTCAAGGAAG
CAGTACAGGCACTCCCTCCTTCTGCCACATCGGCTCTAGAAGTTTCTTTG
CGCTCTGCAGCAACAACAGGAGCAGCAGCAGCATCATCATCGGGTAGCTG
TGACGGTAGACGAGGAGGAGGAGGAGGAGAAGGAGGAGAAAGAGGAAGAG
GAAGGGCGGGGGGAGGACTCAAAATTGACATGAGTCGGTACCAATGAAGG
ATAGAGAGAGGTGGGATTTTCAGGGTCTACGTAAAAAATGTCTATATAAG
AAGGCATGGACATGTGGTTTCGTCGTATGAGATACACCTATAGAATGAAA
ATGAAATTGATAAATAAATGCTTGTTCTTTGCGAAATATTTGCCGTGTGT
TGTCGGTCGTCATCTTTTTATTTATTTTTCTCGGTGTGCGTGCGTCTTTA
TGTGCGGGTACGTGTCTTCTTGCCCTTTTTCTGATACCTCCTCTCCCTCC
TTACACCCTTGCCTCAATCATGCATGCCCCCCACCCCCCATAATGGCGGC
CCATCAAGACCTCCTCCTCTCCCTCCTTCTCTCCTCCTCTCTTCTCCTTC
GTTTTCCCTCCTCTCCTCCCCTCTCCTCATCTCTCCTTCTCCCTCTTCCT
TTCCAATCTTTCTCCTTTCGACCAACCACCGCCTACCTTAAAGGAGCAGA
TACTCCAACATCAAGGTTTCAATCAATCAATCGCCTCCTCTTCCCACGGA
CACGACAACGACCCCATCAAGCATCCAACTAATCGCCTTTTCTCAAGGGC
TCCACATCCGCAATCACCGGCGGCTTGTTCCGACAGATTAATTCAGCGAC
GGTCTCCGCGCTCTCCTCGTCACAAATCAGCACGATCGCCTTCCCCTTGC
TCTGTGCCTCTTGGAAGGCAGCCACGGCCTTCATGGCACCGAGGCCCGCG
ATTACCTTGCACAGCACCTGAGGGAGAGGAGGAGGGAGGGAGGGAGGGAG
TGGTGAGGACGCTCCTTCTTTTGATCCTGTGGGAACCACCCTCGGGGACA
AGGCGAAAGGGGGGTGGAAAAGAGGGAGGACGGGAAGGTGGGAGGAGCTA
CAGAGGGAGGGAGAAAGAGATGGAGGGATAAATTAACAGATCAAGTCCTT
GACGCTTGTACATGTCAAGAAAGAACTTCGGCGTTTGCCGTCAAAGCTCT
TTTAAACGATGTCCCTCTTGACTCGTGCTCATCCCTCTTCCTTCCCGCGA
TTCAACCCTCCCTTCCTACCCCCTTCTCCATATATTGTGACGCGGTATTC
TTTATATAATAGCACAACTTGCCCTCCCTCCCTTCCTCTGCGCCTTCCTC
CCTCCCTACCTTCACCACATGTCCCTGGTCGTACTCCTTGTCCCCCACCA
GCACCACAGCAAACTTCTCACTCTCCTCCTCCTTCGTCTCGAATTTCTGT
TCAGTCTTCTCTTTGTTCTTGGGAGGACCCACGCGTGTGGCGGTTTGGAG
CTGAGGTTTTTGAAGGACGGCCCCGCCTTTTCCTGGTGGGGGAAAGAGGA
AGGAAGGAAGGGAAGGAGAGGGAGAGTGGGGGAGGGAGGGCAAGGGCAGC
AGGGAATGGGAGATGAGATGGATGCACTAGATCAAATGAGTCCCAAGCAC
GCCTGAGTGGTAGATAGAGAGAATGAGAGACAAGGAATGGATCTGCTCAC
GAGCTCTCTCTCTCTCTCGTTCACCATCCGCGTACCTAGGTTGGGCTTGC
CGGGGGATAGGGCTTTGATGGTGGAGTACGAGGCGGGGGAGGGGAGGACA
GGGGGTGGCAAAAAGGCATGTACGGCGAGGATGGGCAACAGCAGGAGTGA
GAGGAAGAGCTGGGGGAGAAGGAAGGGTTGTGATCGCATGGCTTGAAGGC
GTCCGGAGGATCCGAAGGAGCAGCAGGCAGGGAGGACAGGTGGAGTTGCT
GTTGCAGCTGTAGGAGTGTGGGGTGGAGGGGCAGCGGTGAGCATTATAAT
CGAAGGTTGAGAAAAAGACGACAACGATGGACACTCAAGAAAACATCTAC
CATATGACATAGGACTTCTACACCTGGAACGTGTGTGTGGGGTTTGCTGC
CGCTGTGTAAAATGAGACGCATATCCTCTCCTTTTCCAACCCTGATCATC
ATCCACCCTCGCCGCAAGCTTGTGGCGTGCTCGATCCTCGTGACGAGGCG
TGCCTTATTTTCCCATTGTGTCCCGGACTTTTGCGTGTACTTTTTCGCTG
TGGCAGCTTTTTGGCTATGTTCATGCGATAAGTCATGAGCCCAGTAATCC
ATAATCAGATACACACAGCCACTAAAGCGCCTTGACCATGGGAAGGCGCG
GCAAAAACCGACACGACGTCGCTAGCTTTCCTTGTCACGCACCGCCGCCG
TGTTGCTTCGTTCGATACACGATACGCACATAGGCTTTCGAAATAAAACG
ATTTTACAGTGCCTCGCGGCGTCCGATTCATTGCTAGACACTCCCACGCC
ACATCCATACGTATACCCTGACAGGTTTTGGAAGTGTGGGCAAGGCTGAC
CCACGCGGGCGACAAGGCAACCCTCGAGCACACGATACCTTACCGCCATG
CTACCACTACCACCGCCGCCATCACCACTATTACCACGAAGACGGGCTAA
CAGCCCTCACCTTCTTCTCCTTCTTGTCCTGGCAGTGCTTCTTGCTGGAC
AGGTCACCGGTGCTTTCGTTTTCCCGTCTCCTTCCCTGTCCTCTCCCCCC
CCATGTGGGAGACGCGGCATTCTACCTCCCCTCGGGCCCTCCACACTCTC
CTTTCCCCCGCCCACCCAACCGCTACCGACCCTCCACCACTTCGACCTGA
ATCGACGGGAGGACTCTGAGGTGAGCGTAGATTGAATACCTGGCTCTTTA
TAGACCAGTGCCCCTTGTATGTGTATGTATACGTATACGTGTATTCATTA
ATATACCACCGCCTCTGCTCGACTCAACACATAGTCCTCAATGTCGCACA
CACTGATATGGCACTCAATTTTTACAACGCCATCTGCTGATTCCTCCCTC
CCTCTCTCCCTCCTGCAGGACAACCTCCCTGTTGTCGTCCTTCACGGCCT
CCTCGGCTCTTCCCGCAATTTCCGGGGATGGGCGAGCGCACTGCACGAGA
GGCTGGAGAAGCCACGCCGCATTCTAGTCCCAGATCTGAGGAACCATGGG
CAGTCCCCGCATGTGGGGGGAATGAGCTACAGGTAAGGGTGTCACCCTCC
CTCCCTCCCTCCCTCCTTCCCACTCCCATGGAAGCACACATATTGCCTTG
CGGGAGGCTGGATCCAGTCATTTCAAAGTGGTTAGCCCGATCACTCGCAT
TCACGACCTGTCCCCTCCCTCCCTTCCTTTCCTTCAGAGAAATGGTGCAC
GACGTGCTCCGGTTATTGGACGCCGAGGGAATCGGCAAGTGCGTGGTGGT
TGGCCACTCAATGGGGGGGAAAGTGGCAGCAGGTAGGGAGGGAGGGAGGG
GGGAAGGAGAAGGGGAGGAAGACGTGGAGGCATGTACATGGTATATATAT
ATATCACAGCCATCTTCTCACTTCAGCAACTGTTCCTTCCTTCCCTCTCC
TTCCTTTTCCCCCCATCCTCCTTCTCCTAGCGGCTGGTCTCTCCCACCCT
GACCGCATCGCGGGGCTGGTGGTAATGGATATTGCGCCTGTGACGTACAG
TGTCACCGATGGCACCAACTGGCAAGACACGCATGAGGTAGGGAGAAAGG
GAAGGAGGAAAGGAAGGAAGGAGGGAGGGAGGG

Coding sequence (CDS) from alignment at scaffold_37:131639..136871+

>mRNA_9760 ID=mRNA_9760|Name=jgi.p|Nanoce1779_2|607066|organism=Nannochloropsis oceanica|type=CDS|length=375bp|location=Sequence derived from alignment at scaffold_37:131639..136871+ (Nannochloropsis oceanica)
ATGGAAGCACACATATTGCCTTGCGGGAGGCTGGATCCAGTCATTTCAAA
GTGGTTAGCCCGATCACTCGCATTCACGACCTGTCCCCTCCCTCCCTTCC
TTTCCTTCAGAGAAATGGTGCACGACGTGCTCCGGTTATTGGACGCCGAG
GGAATCGGCAAGTGCGTGGTGGTTGGCCACTCAATGGGGGGGAAAGTGGC
AGCAGGTAGGGAGGGAGGGAGGGGGGAAGGAGAAGGGGAGGAAGACGTGG
AGGCATGTACATGGTATATATATATATCACAGCCATCTTCTCACTTCAGC
AACTGTTCCTTCCTTCCCTCTCCTTCCTTTTCCCCCCATCCTCCTTCTCC
TAGCGGCTGGTCTCTCCCACCCTGA

Synonyms

Publications