jgi.p|Nanoce1779_2|607075, mRNA_9759 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|607075
Unique NamemRNA_9759
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1263
Alignment locationscaffold_37:135609..136871 +

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Properties
Property NameValue
TranscriptId607161
TrackFilteredModels2
ProteinId607075
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_37supercontigscaffold_37:135609..136871 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|607075gene_9759Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|607075mRNA_9759-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9759CDS_9759Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9759 ID=mRNA_9759|Name=jgi.p|Nanoce1779_2|607075|organism=Nannochloropsis oceanica|type=mRNA|length=1263bp
ACAGGTTTTGGAAGTGTGGGCAAGGCTGACCCACGCGGGCGACAAGGCAA
CCCTCGAGCACACGATACCTTACCGCCATGCTACCACTACCACCGCCGCC
ATCACCACTATTACCACGAAGACGGGCTAACAGCCCTCACCTTCTTCTCC
TTCTTGTCCTGGCAGTGCTTCTTGCTGGACAGGTCACCGGTGCTTTCGTT
TTCCCGTCTCCTTCCCTGTCCTCTCCCCCCCCATGTGGGAGACGCGGCAT
TCTACCTCCCCTCGGGCCCTCCACACTCTCCTTTCCCCCGCCCACCCAAC
CGCTACCGACCCTCCACCACTTCGACCTGAATCGACGGGAGGACTCTGAG
GTGAGCGTAGATTGAATACCTGGCTCTTTATAGACCAGTGCCCCTTGTAT
GTGTATGTATACGTATACGTGTATTCATTAATATACCACCGCCTCTGCTC
GACTCAACACATAGTCCTCAATGTCGCACACACTGATATGGCACTCAATT
TTTACAACGCCATCTGCTGATTCCTCCCTCCCTCTCTCCCTCCTGCAGGA
CAACCTCCCTGTTGTCGTCCTTCACGGCCTCCTCGGCTCTTCCCGCAATT
TCCGGGGATGGGCGAGCGCACTGCACGAGAGGCTGGAGAAGCCACGCCGC
ATTCTAGTCCCAGATCTGAGGAACCATGGGCAGTCCCCGCATGTGGGGGG
AATGAGCTACAGGTAAGGGTGTCACCCTCCCTCCCTCCCTCCCTCCTTCC
CACTCCCATGGAAGCACACATATTGCCTTGCGGGAGGCTGGATCCAGTCA
TTTCAAAGTGGTTAGCCCGATCACTCGCATTCACGACCTGTCCCCTCCCT
CCCTTCCTTTCCTTCAGAGAAATGGTGCACGACGTGCTCCGGTTATTGGA
CGCCGAGGGAATCGGCAAGTGCGTGGTGGTTGGCCACTCAATGGGGGGGA
AAGTGGCAGCAGGTAGGGAGGGAGGGAGGGGGGAAGGAGAAGGGGAGGAA
GACGTGGAGGCATGTACATGGTATATATATATATCACAGCCATCTTCTCA
CTTCAGCAACTGTTCCTTCCTTCCCTCTCCTTCCTTTTCCCCCCATCCTC
CTTCTCCTAGCGGCTGGTCTCTCCCACCCTGACCGCATCGCGGGGCTGGT
GGTAATGGATATTGCGCCTGTGACGTACAGTGTCACCGATGGCACCAACT
GGCAAGACACGCATGAGGTAGGGAGAAAGGGAAGGAGGAAAGGAAGGAAG
GAGGGAGGGAGGG
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protein sequence of jgi.p|Nanoce1779_2|607075

>mRNA_9759-protein ID=mRNA_9759-protein|Name=jgi.p|Nanoce1779_2|607075|organism=Nannochloropsis oceanica|type=polypeptide|length=82bp
MSHTLIWHSIFTTPSADSSLPLSLLQDNLPVVVLHGLLGSSRNFRGWASA
LHERLEKPRRILVPDLRNHGQSPHVGGMSYR*
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mRNA from alignment at scaffold_37:135609..136871+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9759 ID=mRNA_9759|Name=jgi.p|Nanoce1779_2|607075|organism=Nannochloropsis oceanica|type=mRNA|length=1263bp|location=Sequence derived from alignment at scaffold_37:135609..136871+ (Nannochloropsis oceanica)
ACAGGTTTTGGAAGTGTGGGCAAGGCTGACCCACGCGGGCGACAAGGCAA
CCCTCGAGCACACGATACCTTACCGCCATGCTACCACTACCACCGCCGCC
ATCACCACTATTACCACGAAGACGGGCTAACAGCCCTCACCTTCTTCTCC
TTCTTGTCCTGGCAGTGCTTCTTGCTGGACAGGTCACCGGTGCTTTCGTT
TTCCCGTCTCCTTCCCTGTCCTCTCCCCCCCCATGTGGGAGACGCGGCAT
TCTACCTCCCCTCGGGCCCTCCACACTCTCCTTTCCCCCGCCCACCCAAC
CGCTACCGACCCTCCACCACTTCGACCTGAATCGACGGGAGGACTCTGAG
GTGAGCGTAGATTGAATACCTGGCTCTTTATAGACCAGTGCCCCTTGTAT
GTGTATGTATACGTATACGTGTATTCATTAATATACCACCGCCTCTGCTC
GACTCAACACATAGTCCTCAATGTCGCACACACTGATATGGCACTCAATT
TTTACAACGCCATCTGCTGATTCCTCCCTCCCTCTCTCCCTCCTGCAGGA
CAACCTCCCTGTTGTCGTCCTTCACGGCCTCCTCGGCTCTTCCCGCAATT
TCCGGGGATGGGCGAGCGCACTGCACGAGAGGCTGGAGAAGCCACGCCGC
ATTCTAGTCCCAGATCTGAGGAACCATGGGCAGTCCCCGCATGTGGGGGG
AATGAGCTACAGGTAAGGGTGTCACCCTCCCTCCCTCCCTCCCTCCTTCC
CACTCCCATGGAAGCACACATATTGCCTTGCGGGAGGCTGGATCCAGTCA
TTTCAAAGTGGTTAGCCCGATCACTCGCATTCACGACCTGTCCCCTCCCT
CCCTTCCTTTCCTTCAGAGAAATGGTGCACGACGTGCTCCGGTTATTGGA
CGCCGAGGGAATCGGCAAGTGCGTGGTGGTTGGCCACTCAATGGGGGGGA
AAGTGGCAGCAGGTAGGGAGGGAGGGAGGGGGGAAGGAGAAGGGGAGGAA
GACGTGGAGGCATGTACATGGTATATATATATATCACAGCCATCTTCTCA
CTTCAGCAACTGTTCCTTCCTTCCCTCTCCTTCCTTTTCCCCCCATCCTC
CTTCTCCTAGCGGCTGGTCTCTCCCACCCTGACCGCATCGCGGGGCTGGT
GGTAATGGATATTGCGCCTGTGACGTACAGTGTCACCGATGGCACCAACT
GGCAAGACACGCATGAGGTAGGGAGAAAGGGAAGGAGGAAAGGAAGGAAG
GAGGGAGGGAGGG
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Coding sequence (CDS) from alignment at scaffold_37:135609..136871+

>mRNA_9759 ID=mRNA_9759|Name=jgi.p|Nanoce1779_2|607075|organism=Nannochloropsis oceanica|type=CDS|length=246bp|location=Sequence derived from alignment at scaffold_37:135609..136871+ (Nannochloropsis oceanica)
ATGTCGCACACACTGATATGGCACTCAATTTTTACAACGCCATCTGCTGA
TTCCTCCCTCCCTCTCTCCCTCCTGCAGGACAACCTCCCTGTTGTCGTCC
TTCACGGCCTCCTCGGCTCTTCCCGCAATTTCCGGGGATGGGCGAGCGCA
CTGCACGAGAGGCTGGAGAAGCCACGCCGCATTCTAGTCCCAGATCTGAG
GAACCATGGGCAGTCCCCGCATGTGGGGGGAATGAGCTACAGGTAA
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Synonyms
Publications