jgi.p|Nanoce1779_2|277251, mRNA_9757 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|277251
Unique Name	mRNA_9757
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1633
Alignment location	scaffold_37:130614..133462 -

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Properties


Property Name	Value
TranscriptId	277337
Track	FilteredModels2
ProteinId	277251

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_37	supercontig	scaffold_37:130614..133462 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|277251	gene_9757	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|277251	mRNA_9757-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_9757	CDS_9757	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_37:130614..133462-
coding sequence from alignment at scaffold_37:130614..133462-

mRNA sequence

>mRNA_9757 ID=mRNA_9757|Name=jgi.p|Nanoce1779_2|277251|organism=Nannochloropsis oceanica|type=mRNA|length=1633bp
CAAGCATTTATTTATCAATTTCATTTTCATTCTATAGGTGTATCTCATAC
GACGAAACCACATGTCCATGCCTTCTTATATAGACATTTTTTACGTAGAC
CCTGAAAATCCCACCTCTCTCTATCCTTCATTGGTACCGACTCATGTCAA
TTTTGAGTCCTCCCCCCGCCCTTCCTCTTCCTCTTTCTCCTCCTTCTCCT
CCTCCTCCTCCTCGTCTACCGTCACAGCTACCCGATGATGATGCTGCTGC
TGCTCCTGTTGTTGCTGCAGAGCGCAAAGAAACTTCTAGAGCCGATGTGG
CAGAAGGAGGGAGTGCCTGTACTGCTTCCTTGAAGGGAAGAGGGGCCTGC
TTCGCCATCCCGAGGAGGGCTTGGCCGACGAGGGGGGGGAGAAGGGAGAG
GGAGGGAGGGAGGGCGGGGAGGAGGGCAGCGAGGAGGGGGAGGAGAAGGG
ATAGCTGGCGGGTTTGGTGGATGGGGAGGGAGGAAGGGGGGGAGGGGAGG
TGGGTGAAAGCCAGGACGACAATTTTGAGGGCTTCCGCGAGGAGTGGTTC
TTGCTCAGGGGTGATGAGGAGGGAGGAGGAGGCCGAGGAGGGGAGAGAGG
AAGGGAGGGAGGAAGGGGGAGGAGGGGGTGCGCTTTCGAAGCCGGCCCAG
TCGTCCTCCTCATCCTTCTCTTCTTCCTCTTCTTCCTCTTCTTCCTCTTC
TTCCTCTTCTTTGCCCTCCGTTCCATCTTCCCCTATTTCAGCCGTTAAAG
ACGAAGAAGAAGACGGAAAAGGAAAAGGTGACGTCAAGAAAGAGTCTCGT
CGAGCCCCTCCTTCCCCCTCTTCCTCCCTACCTCCCTCCTGTTCTCCTGA
GAAAGCAGGACAGGAGAGTAACTCTGTCAACATGACCTCCGCAGCCACAC
CCACCAGCAGGAGGAGTTCTGTCCCCGTTCCCTCCTCCTCCTCTTCCTCC
CCGTCCTCCTTCCCTCCCTCTTTTTTCAGCCCATCTGCTGCTGCTGCTGT
TGCTGTTGCTGCTGCTGCTGTTGCTGCTGCACAGGCTGATAACAGCCCTG
CTACGGATTTCCACAGGGCTGAAGACAAGATGACATTCGCCTCCTCCCCC
TCCACCTCTTCGAACTCTCCCTCCCCCCCTTCTTCCTCCTCCTCCTCCTC
CTCCTCCTCAACCGACAACAATCGCAAGCCAAATTTGAAGGCCCTGAGAG
CGTAATTCAGGAGAGAGGAGAAAAAGGAAAGGAGTAGTTCAAGAGCGCGG
GGGGAGAAGGAAGGGAGGAGGAAGAAGAGGAGGAGGTAGGGTAGGAGGAT
GGGGTCGTCGGACACGCGCACTGCTGCAACACTTTCTCAATTAGTGCAAA
CAGAAATGTTACGTCTTCCTCCCTTTCCTGCACTCCCTCCTCTCCCATCA
CCCACGCCGCCGCCGTCATCATCACCCACCAGCCCCTTCCGTCCTCCTCC
CCCCGCCACTACCGCCCCTCCCTCCCTCCCTCCCTCCCCCTCCTCCTCTT
CCCATTTTAGGATAATTTTCAGAGCGGCAAGCCAATGGAGAAGGAGGAGG
GGGAGGAGCTTCCCTCCGGCCCGCTGGGACGAGGTGAAGATGGATCGGAG
TGAGGGGAGGAGGGAGGGGGGGGAGGGAGGAAG

protein sequence of jgi.p|Nanoce1779_2|277251

>mRNA_9757-protein ID=mRNA_9757-protein|Name=jgi.p|Nanoce1779_2|277251|organism=Nannochloropsis oceanica|type=polypeptide|length=354bp
MSILSPPPALPLPLSPPSPPPPPRLPSQLPDDDAAAAPVVAAERKETSRA
DVAEGGSACTASLKGRGACFAIPRRAWPTRGGRREREGGRAGRRAARRGR
RRDSWRVWWMGREEGGEGRWVKARTTILRASARSGSCSGVMRREEEAEEG
REEGREEGGGGGALSKPAQSSSSSFSSSSSSSSSSSSSSLPSVPSSPISA
VKDEEEDGKGKGDVKKESRRAPPSPSSSLPPSCSPEKAGQESNSVNMTSA
ATPTSRRSSVPVPSSSSSSPSSFPPSFFSPSAAAAVAVAAAAVAAAQADN
SPATDFHRAEDKMTFASSPSTSSNSPSPPSSSSSSSSSSTDNNRKPNLKA
LRA*

mRNA from alignment at scaffold_37:130614..133462-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9757 ID=mRNA_9757|Name=jgi.p|Nanoce1779_2|277251|organism=Nannochloropsis oceanica|type=mRNA|length=2849bp|location=Sequence derived from alignment at scaffold_37:130614..133462- (Nannochloropsis oceanica)
CAAGCATTTATTTATCAATTTCATTTTCATTCTATAGGTGTATCTCATAC
GACGAAACCACATGTCCATGCCTTCTTATATAGACATTTTTTACGTAGAC
CCTGAAAATCCCACCTCTCTCTATCCTTCATTGGTACCGACTCATGTCAA
TTTTGAGTCCTCCCCCCGCCCTTCCTCTTCCTCTTTCTCCTCCTTCTCCT
CCTCCTCCTCCTCGTCTACCGTCACAGCTACCCGATGATGATGCTGCTGC
TGCTCCTGTTGTTGCTGCAGAGCGCAAAGAAACTTCTAGAGCCGATGTGG
CAGAAGGAGGGAGTGCCTGTACTGCTTCCTTGAAGGGAAGAGGGGCCTGC
TTCGCCATCCCGAGGAGGGCTTGGCCGACGAGGGGGGGGAGAAGGGAGAG
GGAGGGAGGGAGGGCGGGGAGGAGGGCAGCGAGGAGGGGGAGGAGAAGGG
ATAGCTGGCGGGTTTGGTGGATGGGGAGGGAGGAAGGGGGGGAGGGGAGG
TGGGTGAAAGCCAGGACGACAATTTTGAGGGCTTCCGCGAGGAGTGGTTC
TTGCTCAGGGGTGATGAGGAGGGAGGAGGAGGCCGAGGAGGGGAGAGAGG
AAGGGAGGGAGGAAGGGGGAGGAGGGGGTGCGCTTTCGAAGCCGGCCCAG
TCGTCCTCCTCATCCTTCTCTTCTTCCTCTTCTTCCTCTTCTTCCTCTTC
TTCCTCTTCTTTGCCCTCCGTTCCATCTTCCCCTATTTCAGCCGTTAAAG
ACGAAGAAGAAGACGGAACAGAAGGAGGAGGAGGAGGGGGGGGGGGGGGG
GGGGGGAAGGAGTAAGAGGAGGAGGAAGAGCCAACGCCTCCATGGCCAGA
GGTCCGAATACCCGGAAGAGTGTCGAGGAAGGAATCCCTTCCCTTTCTCT
CCCCCTCCCTCCGCGGGCTTGCAGGTGTGCTCGGACTGTGGAGAAGACAA
GGAGCTGGAGGGAGGGAGGGAGGGAGGGAAAGCGTCCGGCGAGGGCGAGT
AGCGGTGCCTCGGTGCAACTGGCCAAGAGGTTGAAGGAGGAAGGATGGGG
AAGGGAGTGGAGGAGGGCGTCGGTGATGTAGAACCATCCTTCGAGCCCCT
TCTGTGCTTGTCGTCGCTGCAGCTGCTGCAGCTGGCTTGCTTCTTGTGCG
GCCCTCCCCTCCCACCCCTCCTCCCCTTCCTCCTCGGCAGAAGGAAAAGG
TGACGTCAAGAAAGAGTCTCGTCGAGCCCCTCCTTCCCCCTCTTCCTCCC
TACCTCCCTCCTGTTCTCCTGAGAAAGCAGGACAGGAGAGTAACTCTGTC
AACATGACCTCCGCAGCCACACCCACCAGCAGGAGGAGTTCTGTCCCCGT
TCCCTCCTCCTCCTCTTCCTCCCCGTCCTCCTTCCCTCCCTCTTTTTTCA
GCCCATCTGCTGCTGCTGCTGTTGCTGTTGCTGCTGCTGCTGTTGCTGCT
GCACAGGCTGATAACAGCCCTGCTACGGATTTCCACAGGGCTGAAGACAA
GATGACATTCGCCTCCTCCCCCTCCACCTCTTCGAACTCTCCCTCCCCCC
CTTCTTCCTCCTCCTCCTCCTCCTCCTCCTCAACCGACAACAATCGCAAG
CCAAATTTGAAGGCCCTGAGAGCGTAATTCAGGAGAGAGGGAAGGAGGGA
GGGAAGGAGAGAGGGAGGGCAAAGAGGAGGGATGGCAGCGGGAAGGTCCA
GAAGCTCGAGGGAGGGAGGGGTGATGAGGAGGGAGAGGGGGTGGTGGAGA
CGAAGAGGAGGAAGGACCCCCGCCTGCAGCTGACGGCTCAGTCGACTCCT
CCCTCCCTTCCTCCCTCCCTCCCTCCCTCCCTTCCTCCTTGTCGAAGAGC
TCGGGGAGCAAGCGATAGATAGGCAGAAAGACTACTTCCAAAACTGCATG
CCATAGTTTCCTCCCTCCCTCTCTCCATCCCTCCTCCCCTCCCTCCATCC
CTCCCTCGCTCCGTTCTTCTTCGGCCAGGATCTTTTGCAGGAGCGAGGAA
GAGGAGGAGATGGAGGAAGGTGAGGAAGTAAGGGAAGGGAGGAAGAGAGT
GGTGAGGAGTTTAACGGCCGTGTGACGGAGGGGGGGAGGGAGGGCGGGAA
GGAGGGCAGGACCATGCGACAGCGCACGTAGGAAGCAGGCGAGCCGAGAG
GGGGTGAGGAAGGGAAGGAGGGAGGGCGGGTCAGAAGAGGAAAATAGGGC
AACGGCAGTAAGGAGAGTATGATACAAGAGGCTCTGTCCCTCCTCCTCTT
CCTCCTCCTCCTCCTGCTTTCTCTGGGTCTCCCTCCCTCCCTCCCTCCCA
CCGAGTCCTAAAATTGCTCTCACGAGGTATCTTGACCGCGCGCTTTCCTT
CCCTTCAACAACAGCATCATCAGCATCAGCAGCAGCAGCAGCAGCAGCAG
CAGCAACAGGAGGAGAAATAGCACAGGTAGGAGGAGAAAAAGGAAAGGAG
TAGTTCAAGAGCGCGGGGGGAGAAGGAAGGGAGGAGGAAGAAGAGGAGGA
GGTAGGGTAGGAGGATGGGGTCGTCGGACACGCGCACTGCTGCAACACTT
TCTCAATTAGTGCAAACAGAAATGTTACGTCTTCCTCCCTTTCCTGCACT
CCCTCCTCTCCCATCACCCACGCCGCCGCCGTCATCATCACCCACCAGCC
CCTTCCGTCCTCCTCCCCCCGCCACTACCGCCCCTCCCTCCCTCCCTCCC
TCCCCCTCCTCCTCTTCCCATTTTAGGATAATTTTCAGAGCGGCAAGCCA
ATGGAGAAGGAGGAGGGGGAGGAGCTTCCCTCCGGCCCGCTGGGACGAGG
TGAAGATGGATCGGAGTGAGGGGAGGAGGGAGGGGGGGGAGGGAGGAAG

Coding sequence (CDS) from alignment at scaffold_37:130614..133462-

>mRNA_9757 ID=mRNA_9757|Name=jgi.p|Nanoce1779_2|277251|organism=Nannochloropsis oceanica|type=CDS|length=2124bp|location=Sequence derived from alignment at scaffold_37:130614..133462- (Nannochloropsis oceanica)
AAGGAAAAGGTGACGTCAAGAAAGAGTCTCGTCGAGCCCCTCCTTCCCCC
TCTTCCTCCCTACCTCCCTCCTGTTCTCCTGAGAAAGCAGGACAGGAGAG
TAACTCTGTCAACATGACCTCCGCAGCCACACCCACCAGCAGGAGGAGTT
CTGTCCCCGTTCCCTCCTCCTCCTCTTCCTCCCCGTCCTCCTTCCCTCCC
TCTTTTTTCAGCCCATCTGCTGCTGCTGCTGTTGCTGTTGCTGCTGCTGC
TGTTGCTGCTGCACAGGCTGATAACAGCCCTGCTACGGATTTCCACAGGG
CTGAAGACAAGATGACATTCGCCTCCTCCCCCTCCACCTCTTCGAACTCT
CCCTCCCCCCCTTCTTCCTCCTCCTCCTCCTCCTCCTCCTCAACCGACAA
CAATCGCAAGCCAAATTTGAAGGCCCTGAGAGCGTAAATGTCAATTTTGA
GTCCTCCCCCCGCCCTTCCTCTTCCTCTTTCTCCTCCTTCTCCTCCTCCT
CCTCCTCGTCTACCGTCACAGCTACCCGATGATGATGCTGCTGCTGCTCC
TGTTGTTGCTGCAGAGCGCAAAGAAACTTCTAGAGCCGATGTGGCAGAAG
GAGGGAGTGCCTGTACTGCTTCCTTGAAGGGAAGAGGGGCCTGCTTCGCC
ATCCCGAGGAGGGCTTGGCCGACGAGGGGGGGGAGAAGGGAGAGGGAGGG
AGGGAGGGCGGGGAGGAGGGCAGCGAGGAGGGGGAGGAGAAGGGATAGCT
GGCGGGTTTGGTGGATGGGGAGGGAGGAAGGGGGGGAGGGGAGGTGGGTG
AAAGCCAGGACGACAATTTTGAGGGCTTCCGCGAGGAGTGGTTCTTGCTC
AGGGGTGATGAGGAGGGAGGAGGAGGCCGAGGAGGGGAGAGAGGAAGGGA
GGGAGGAAGGGGGAGGAGGGGGTGCGCTTTCGAAGCCGGCCCAGTCGTCC
TCCTCATCCTTCTCTTCTTCCTCTTCTTCCTCTTCTTCCTCTTCTTCCTC
TTCTTTGCCCTCCGTTCCATCTTCCCCTATTTCAGCCGTTAAAGACGAAG
AAGAAGACGGAAAAGGAAAAGGTGACGTCAAGAAAGAGTCTCGTCGAGCC
CCTCCTTCCCCCTCTTCCTCCCTACCTCCCTCCTGTTCTCCTGAGAAAGC
AGGACAGGAGAGTAACTCTGTCAACATGACCTCCGCAGCCACACCCACCA
GCAGGAGGAGTTCTGTCCCCGTTCCCTCCTCCTCCTCTTCCTCCCCGTCC
TCCTTCCCTCCCTCTTTTTTCAGCCCATCTGCTGCTGCTGCTGTTGCTGT
TGCTGCTGCTGCTGTTGCTGCTGCACAGGCTGATAACAGCCCTGCTACGG
ATTTCCACAGGGCTGAAGACAAGATGACATTCGCCTCCTCCCCCTCCACC
TCTTCGAACTCTCCCTCCCCCCCTTCTTCCTCCTCCTCCTCCTCCTCCTC
CTCAACCGACAACAATCGCAAGCCAAATTTGAAGGCCCTGAGAGCGTAAA
TGTCAATTTTGAGTCCTCCCCCCGCCCTTCCTCTTCCTCTTTCTCCTCCT
TCTCCTCCTCCTCCTCCTCGTCTACCGTCACAGCTACCCGATGATGATGC
TGCTGCTGCTCCTGTTGTTGCTGCAGAGCGCAAAGAAACTTCTAGAGCCG
ATGTGGCAGAAGGAGGGAGTGCCTGTACTGCTTCCTTGAAGGGAAGAGGG
GCCTGCTTCGCCATCCCGAGGAGGGCTTGGCCGACGAGGGGGGGGAGAAG
GGAGAGGGAGGGAGGGAGGGCGGGGAGGAGGGCAGCGAGGAGGGGGAGGA
GAAGGGATAGCTGGCGGGTTTGGTGGATGGGGAGGGAGGAAGGGGGGGAG
GGGAGGTGGGTGAAAGCCAGGACGACAATTTTGAGGGCTTCCGCGAGGAG
TGGTTCTTGCTCAGGGGTGATGAGGAGGGAGGAGGAGGCCGAGGAGGGGA
GAGAGGAAGGGAGGGAGGAAGGGGGAGGAGGGGGTGCGCTTTCGAAGCCG
GCCCAGTCGTCCTCCTCATCCTTCTCTTCTTCCTCTTCTTCCTCTTCTTC
CTCTTCTTCCTCTTCTTTGCCCTCCGTTCCATCTTCCCCTATTTCAGCCG
TTAAAGACGAAGAAGAAGACGGAA

Synonyms

Publications