jgi.p|Nanoce1779_2|607050, mRNA_9754 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|607050
Unique NamemRNA_9754
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length497
Alignment locationscaffold_37:117102..117598 -

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Properties
Property NameValue
TranscriptId607136
TrackFilteredModels2
ProteinId607050
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_37supercontigscaffold_37:117102..117598 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|607050gene_9754Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|607050mRNA_9754-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9754CDS_9754Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9754 ID=mRNA_9754|Name=jgi.p|Nanoce1779_2|607050|organism=Nannochloropsis oceanica|type=mRNA|length=497bp
TCAGCTCTGAAATGGAGCATTTTAAATGGAGGGTACCATACCCACACTCT
TTTGGGGGCGTCGTGACGATGCACATGGACCAGTGGCGAGAAGTGAACGG
CTTCAGCAACGATTATGTAGGTTGGGGTGGCGAGGATGACGACTTGTATG
AGCGGGTTCGTACCAATGGTCTCCTCCAAGGCAACAAGAGTGTGAGTCGG
CCTCCAAAGGGGTCAGGAAGATTTAAGACCACCAACCAGTCACTTGTCCA
TCATCCATCGGGTATAAAAGGGAAAGATGAATATGCGCATTCAACTGCTC
TTCTAGATAAGATGAAGAAGGGTAGCGATCGGTGGAAGACTGATGGATTG
TCAGATCTGCATTACACAATAGTGCAACATGAGGTGAAGACAGGGCTATC
AGGGTTTGCGTCTGTACATCGCATAATGTGTATTCCCTAATGGTGCACCT
GGAAATAAGATTTGTTTCAGGCTTATATGATCATACTACCGTATGTC
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protein sequence of jgi.p|Nanoce1779_2|607050

>mRNA_9754-protein ID=mRNA_9754-protein|Name=jgi.p|Nanoce1779_2|607050|organism=Nannochloropsis oceanica|type=polypeptide|length=143bp
MEHFKWRVPYPHSFGGVVTMHMDQWREVNGFSNDYVGWGGEDDDLYERVR
TNGLLQGNKSVSRPPKGSGRFKTTNQSLVHHPSGIKGKDEYAHSTALLDK
MKKGSDRWKTDGLSDLHYTIVQHEVKTGLSGFASVHRIMCIP*
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mRNA from alignment at scaffold_37:117102..117598-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9754 ID=mRNA_9754|Name=jgi.p|Nanoce1779_2|607050|organism=Nannochloropsis oceanica|type=mRNA|length=497bp|location=Sequence derived from alignment at scaffold_37:117102..117598- (Nannochloropsis oceanica)
TCAGCTCTGAAATGGAGCATTTTAAATGGAGGGTACCATACCCACACTCT
TTTGGGGGCGTCGTGACGATGCACATGGACCAGTGGCGAGAAGTGAACGG
CTTCAGCAACGATTATGTAGGTTGGGGTGGCGAGGATGACGACTTGTATG
AGCGGGTTCGTACCAATGGTCTCCTCCAAGGCAACAAGAGTGTGAGTCGG
CCTCCAAAGGGGTCAGGAAGATTTAAGACCACCAACCAGTCACTTGTCCA
TCATCCATCGGGTATAAAAGGGAAAGATGAATATGCGCATTCAACTGCTC
TTCTAGATAAGATGAAGAAGGGTAGCGATCGGTGGAAGACTGATGGATTG
TCAGATCTGCATTACACAATAGTGCAACATGAGGTGAAGACAGGGCTATC
AGGGTTTGCGTCTGTACATCGCATAATGTGTATTCCCTAATGGTGCACCT
GGAAATAAGATTTGTTTCAGGCTTATATGATCATACTACCGTATGTC
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Coding sequence (CDS) from alignment at scaffold_37:117102..117598-

>mRNA_9754 ID=mRNA_9754|Name=jgi.p|Nanoce1779_2|607050|organism=Nannochloropsis oceanica|type=CDS|length=429bp|location=Sequence derived from alignment at scaffold_37:117102..117598- (Nannochloropsis oceanica)
ATGGAGCATTTTAAATGGAGGGTACCATACCCACACTCTTTTGGGGGCGT
CGTGACGATGCACATGGACCAGTGGCGAGAAGTGAACGGCTTCAGCAACG
ATTATGTAGGTTGGGGTGGCGAGGATGACGACTTGTATGAGCGGGTTCGT
ACCAATGGTCTCCTCCAAGGCAACAAGAGTGTGAGTCGGCCTCCAAAGGG
GTCAGGAAGATTTAAGACCACCAACCAGTCACTTGTCCATCATCCATCGG
GTATAAAAGGGAAAGATGAATATGCGCATTCAACTGCTCTTCTAGATAAG
ATGAAGAAGGGTAGCGATCGGTGGAAGACTGATGGATTGTCAGATCTGCA
TTACACAATAGTGCAACATGAGGTGAAGACAGGGCTATCAGGGTTTGCGT
CTGTACATCGCATAATGTGTATTCCCTAA
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Synonyms
Publications