jgi.p|Nanoce1779_2|607047, mRNA_9753 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|607047
Unique NamemRNA_9753
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length645
Alignment locationscaffold_37:115982..116626 +

Link to JBrowse

Properties
Property NameValue
TranscriptId607133
TrackFilteredModels2
ProteinId607047
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_37supercontigscaffold_37:115982..116626 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|607047gene_9753Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|607047mRNA_9753-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9753CDS_9753Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9753 ID=mRNA_9753|Name=jgi.p|Nanoce1779_2|607047|organism=Nannochloropsis oceanica|type=mRNA|length=645bp
AGCATGGCCGCGATGGTAGCTTCGACGGGGGGAGGCGGAGGAAGGGGGGG
AGGGAAAGAGGCAGGTGGAGGTGGAGGTGGAGGTGGAGAGGCAATGTGGG
GGAACTTGATGCAGGTGTTTTTGGTGGAGGTGAACGCGATGGTGAGGGCC
CACGTGGCGGGCTTGGGGGCCAATGCATTGGTATCCTATCGGCTTGTCAT
GCAAGAGAGTGGAGGGAGAGTGTATAGAAGCACGACATATAATATGATCA
GCGTGAGAGGGGATGCGGTCCTGGTGTGTAGTAGTGCTAGTGGAGGAGGG
AGGGAAGAAGGGAGAGAGGGGGGAATGGGAGCGAGGGATCTGGGTTATGG
CGGCCGAAGGAGTCAGGAGGAGATGGGATAGGGGTAGGGTCGTTAGGAGG
GTCGTCTCTGTTATTTCCGACTGGATGAAGTGAAGCCAGGGGAGAAAGGT
GGAGGGACTAGCAGAGGCAGCGCAATAGAGAGAGTAGAAGTCTTAGTCGT
CATACGATTCGGTAGGAGTCGATGGCTCGGCTCTAGTGCTGTTGTACATG
CCGCGGAGCTTTAGCACGTGATATCTTGCATGCGACCTTCTCAAAGAGAA
AGAAGACGAAGGAAAGAAAAATTAACGCAGAAGCACCTTCTTAAA
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protein sequence of jgi.p|Nanoce1779_2|607047

>mRNA_9753-protein ID=mRNA_9753-protein|Name=jgi.p|Nanoce1779_2|607047|organism=Nannochloropsis oceanica|type=polypeptide|length=126bp
MAAMVASTGGGGGRGGGKEAGGGGGGGGEAMWGNLMQVFLVEVNAMVRAH
VAGLGANALVSYRLVMQESGGRVYRSTTYNMISVRGDAVLVCSSASGGGR
EEGREGGMGARDLGYGGRRSQEEMG*
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mRNA from alignment at scaffold_37:115982..116626+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9753 ID=mRNA_9753|Name=jgi.p|Nanoce1779_2|607047|organism=Nannochloropsis oceanica|type=mRNA|length=645bp|location=Sequence derived from alignment at scaffold_37:115982..116626+ (Nannochloropsis oceanica)
AGCATGGCCGCGATGGTAGCTTCGACGGGGGGAGGCGGAGGAAGGGGGGG
AGGGAAAGAGGCAGGTGGAGGTGGAGGTGGAGGTGGAGAGGCAATGTGGG
GGAACTTGATGCAGGTGTTTTTGGTGGAGGTGAACGCGATGGTGAGGGCC
CACGTGGCGGGCTTGGGGGCCAATGCATTGGTATCCTATCGGCTTGTCAT
GCAAGAGAGTGGAGGGAGAGTGTATAGAAGCACGACATATAATATGATCA
GCGTGAGAGGGGATGCGGTCCTGGTGTGTAGTAGTGCTAGTGGAGGAGGG
AGGGAAGAAGGGAGAGAGGGGGGAATGGGAGCGAGGGATCTGGGTTATGG
CGGCCGAAGGAGTCAGGAGGAGATGGGATAGGGGTAGGGTCGTTAGGAGG
GTCGTCTCTGTTATTTCCGACTGGATGAAGTGAAGCCAGGGGAGAAAGGT
GGAGGGACTAGCAGAGGCAGCGCAATAGAGAGAGTAGAAGTCTTAGTCGT
CATACGATTCGGTAGGAGTCGATGGCTCGGCTCTAGTGCTGTTGTACATG
CCGCGGAGCTTTAGCACGTGATATCTTGCATGCGACCTTCTCAAAGAGAA
AGAAGACGAAGGAAAGAAAAATTAACGCAGAAGCACCTTCTTAAA
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Coding sequence (CDS) from alignment at scaffold_37:115982..116626+

>mRNA_9753 ID=mRNA_9753|Name=jgi.p|Nanoce1779_2|607047|organism=Nannochloropsis oceanica|type=CDS|length=378bp|location=Sequence derived from alignment at scaffold_37:115982..116626+ (Nannochloropsis oceanica)
ATGGCCGCGATGGTAGCTTCGACGGGGGGAGGCGGAGGAAGGGGGGGAGG
GAAAGAGGCAGGTGGAGGTGGAGGTGGAGGTGGAGAGGCAATGTGGGGGA
ACTTGATGCAGGTGTTTTTGGTGGAGGTGAACGCGATGGTGAGGGCCCAC
GTGGCGGGCTTGGGGGCCAATGCATTGGTATCCTATCGGCTTGTCATGCA
AGAGAGTGGAGGGAGAGTGTATAGAAGCACGACATATAATATGATCAGCG
TGAGAGGGGATGCGGTCCTGGTGTGTAGTAGTGCTAGTGGAGGAGGGAGG
GAAGAAGGGAGAGAGGGGGGAATGGGAGCGAGGGATCTGGGTTATGGCGG
CCGAAGGAGTCAGGAGGAGATGGGATAG
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Synonyms
Publications