jgi.p|Nanoce1779_2|607015, mRNA_9746 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|607015
Unique NamemRNA_9746
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length413
Alignment locationscaffold_37:93987..94636 -

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Properties
Property NameValue
TranscriptId607101
TrackFilteredModels2
ProteinId607015
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_37supercontigscaffold_37:93987..94636 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|607015gene_9746Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|607015mRNA_9746-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9746CDS_9746Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9746 ID=mRNA_9746|Name=jgi.p|Nanoce1779_2|607015|organism=Nannochloropsis oceanica|type=mRNA|length=413bp
ACAGCACCACAAGATGGCACGCGGCCTCTTCACCTGGGGTGCCCTCCTCC
TCCTAGCCCTCTTCGCTCTCCTCTCCTCCTCCCATGCGTTTTTTGTGGCG
GCGCCCGCCCGTACCGCGCTCTACTCCTCTCCCTCAATCCAACCACAACA
ACGGCAGCAAGGACGAATGACCATGATGGGTGGGAAGGTGGCAAAATTTG
GGATTTTCTCCCCTGCAGTCGTCGTGGCCAAGATCTTGCTAGGCGAGCAG
AAGCTGAACAAGGTCCGCGGCAAGGCCATTTCCCTCCACTCCCAAGCCAT
CACCGAGTTCTGCTACTTTGTGGGCGCACAAGGTAAAACCCGCAACCGTC
TCATCAAGAAGGCGAAGACCAATGGCGACGATCTTGGCTTCTTGTGGTAG
AGGGAGGGAGGGA
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protein sequence of jgi.p|Nanoce1779_2|607015

>mRNA_9746-protein ID=mRNA_9746-protein|Name=jgi.p|Nanoce1779_2|607015|organism=Nannochloropsis oceanica|type=polypeptide|length=129bp
MARGLFTWGALLLLALFALLSSSHAFFVAAPARTALYSSPSIQPQQRQQG
RMTMMGGKVAKFGIFSPAVVVAKILLGEQKLNKVRGKAISLHSQAITEFC
YFVGAQGKTRNRLIKKAKTNGDDLGFLW*
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mRNA from alignment at scaffold_37:93987..94636-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9746 ID=mRNA_9746|Name=jgi.p|Nanoce1779_2|607015|organism=Nannochloropsis oceanica|type=mRNA|length=650bp|location=Sequence derived from alignment at scaffold_37:93987..94636- (Nannochloropsis oceanica)
ACAGCACCACAAGATGGCACGCGGCCTCTTCACCTGGGGTGCCCTCCTCC
TCCTAGCCCTCTTCGCTCTCCTCTCCTCCTCCCATGCGTTTTTTGTGGCG
GCGCCCGCCCGTACCGCGCTCTACTCCTCTCCCTCAATCCAACCACAACA
ACGGCAGCAAGGACGAATGACCATGATGGGTGGGAAGGTGGCAAAATTTG
GGATTTTCTCCCCTGCAGTCGTCGTGGCCAAGATCTTGCTAGGCGAGCAG
AAGCTGAACAAGGTGCGTTACTCGACGGAGAAGGAAGGACGAAGGGGAAG
GATGGAGCATGTTCTGGAAAGAGAGCGTGGGAATGCGATAAGTTTCTTTC
AGAGAGGTCATACTACACTCTCTGACAAACGAGCGGCAAGGAATGCCTTT
TAAATGGGACGGTATTCCCCTCCGTGACGACGGACTGTGCTCACCTCCCT
CGCTCCCTCCCTCTCTTCCCCCCCCCCGCCCCCTTTCGTTGTACCCCAGG
TCCGCGGCAAGGCCATTTCCCTCCACTCCCAAGCCATCACCGAGTTCTGC
TACTTTGTGGGCGCACAAGGTAAAACCCGCAACCGTCTCATCAAGAAGGC
GAAGACCAATGGCGACGATCTTGGCTTCTTGTGGTAGAGGGAGGGAGGGA
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Coding sequence (CDS) from alignment at scaffold_37:93987..94636-

>mRNA_9746 ID=mRNA_9746|Name=jgi.p|Nanoce1779_2|607015|organism=Nannochloropsis oceanica|type=CDS|length=774bp|location=Sequence derived from alignment at scaffold_37:93987..94636- (Nannochloropsis oceanica)
GTCCGCGGCAAGGCCATTTCCCTCCACTCCCAAGCCATCACCGAGTTCTG
CTACTTTGTGGGCGCACAAGGTAAAACCCGCAACCGTCTCATCAAGAAGG
CGAAGACCAATGGCGACGATCTTGGCTTCTTGTGGTAGATGGCACGCGGC
CTCTTCACCTGGGGTGCCCTCCTCCTCCTAGCCCTCTTCGCTCTCCTCTC
CTCCTCCCATGCGTTTTTTGTGGCGGCGCCCGCCCGTACCGCGCTCTACT
CCTCTCCCTCAATCCAACCACAACAACGGCAGCAAGGACGAATGACCATG
ATGGGTGGGAAGGTGGCAAAATTTGGGATTTTCTCCCCTGCAGTCGTCGT
GGCCAAGATCTTGCTAGGCGAGCAGAAGCTGAACAAGGTCCGCGGCAAGG
CCATTTCCCTCCACTCCCAAGCCATCACCGAGTTCTGCTACTTTGTGGGC
GCACAAGGTAAAACCCGCAACCGTCTCATCAAGAAGGCGAAGACCAATGG
CGACGATCTTGGCTTCTTGTGGTAGATGGCACGCGGCCTCTTCACCTGGG
GTGCCCTCCTCCTCCTAGCCCTCTTCGCTCTCCTCTCCTCCTCCCATGCG
TTTTTTGTGGCGGCGCCCGCCCGTACCGCGCTCTACTCCTCTCCCTCAAT
CCAACCACAACAACGGCAGCAAGGACGAATGACCATGATGGGTGGGAAGG
TGGCAAAATTTGGGATTTTCTCCCCTGCAGTCGTCGTGGCCAAGATCTTG
CTAGGCGAGCAGAAGCTGAACAAG
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Synonyms
Publications