jgi.p|Nanoce1779_2|607009, mRNA_9744 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|607009
Unique NamemRNA_9744
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length702
Alignment locationscaffold_37:88308..89009 -

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Properties
Property NameValue
TranscriptId607095
TrackFilteredModels2
ProteinId607009
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_37supercontigscaffold_37:88308..89009 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|607009gene_9744Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9744CDS_9744Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|607009mRNA_9744-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9744 ID=mRNA_9744|Name=jgi.p|Nanoce1779_2|607009|organism=Nannochloropsis oceanica|type=mRNA|length=702bp
ATGCTCCCTCCCAAGACCCAAGTGAGGAAAGGAGAGAAGGGAGGAAGGGA
AGGAGGGAAGAGAGGGGTTATGTATTCTGACCGTAACCAAGGCACAGGCC
CGGATACGAAGGGAGGGAAGAAGGGCGGGAAGCAGGAGGGGTTTCCCCAA
CCACCCATACCATCACCAGCAAATCCATCAGCAACACCCAAAAAAAGAAC
AGCAACAGTAGCAACAGCAACAGCAATAACATCCACATCAGCAGCAGGCA
CAGCAGCAACAACACCACCACCAGCGACACCACCAACAAGAGCAATTAAA
GAGAAAAAAGAAGACAAGGAGGGGGTTGGGGGAGGGCCTAAGAAATTCCA
TTACTTGGGCGAGCAAAAAAAGCTGGTGAGGACGTATGCAAGGTTCACTT
TGGGGCTAGGCGCTAACTGGAGCCGGGACTTGAGGGAGGTGGTGAGCGCG
CGGGGTGTGGCGCTGAGTGACTTGAGTTTAAGCGACTGGTCGCAGAGTGA
GCTGGACGCATTGTACCAGTACTGGAGCGTGGAGAGCCCGGGGATGGAGG
CCTTGAGGGAGCACTGGGTTGGGGAGAAGAGGCTCCAGGACCCTTCCGTC
GGCACCTCCATCGGCACTTCCGTCACGACCTCCGGGGGCAGTGGGGGAGG
GAGGTGGGGAGGACAGACTGCTGCTGCTGCTGCTACTACTACTGCTACTG
CT
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protein sequence of jgi.p|Nanoce1779_2|607009

>mRNA_9744-protein ID=mRNA_9744-protein|Name=jgi.p|Nanoce1779_2|607009|organism=Nannochloropsis oceanica|type=polypeptide|length=234bp
MLPPKTQVRKGEKGGREGGKRGVMYSDRNQGTGPDTKGGKKGGKQEGFPQ
PPIPSPANPSATPKKRTATVATATAITSTSAAGTAATTPPPATPPTRAIK
EKKEDKEGVGGGPKKFHYLGEQKKLVRTYARFTLGLGANWSRDLREVVSA
RGVALSDLSLSDWSQSELDALYQYWSVESPGMEALREHWVGEKRLQDPSV
GTSIGTSVTTSGGSGGGRWGGQTAAAAATTTATA
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mRNA from alignment at scaffold_37:88308..89009-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9744 ID=mRNA_9744|Name=jgi.p|Nanoce1779_2|607009|organism=Nannochloropsis oceanica|type=mRNA|length=702bp|location=Sequence derived from alignment at scaffold_37:88308..89009- (Nannochloropsis oceanica)
ATGCTCCCTCCCAAGACCCAAGTGAGGAAAGGAGAGAAGGGAGGAAGGGA
AGGAGGGAAGAGAGGGGTTATGTATTCTGACCGTAACCAAGGCACAGGCC
CGGATACGAAGGGAGGGAAGAAGGGCGGGAAGCAGGAGGGGTTTCCCCAA
CCACCCATACCATCACCAGCAAATCCATCAGCAACACCCAAAAAAAGAAC
AGCAACAGTAGCAACAGCAACAGCAATAACATCCACATCAGCAGCAGGCA
CAGCAGCAACAACACCACCACCAGCGACACCACCAACAAGAGCAATTAAA
GAGAAAAAAGAAGACAAGGAGGGGGTTGGGGGAGGGCCTAAGAAATTCCA
TTACTTGGGCGAGCAAAAAAAGCTGGTGAGGACGTATGCAAGGTTCACTT
TGGGGCTAGGCGCTAACTGGAGCCGGGACTTGAGGGAGGTGGTGAGCGCG
CGGGGTGTGGCGCTGAGTGACTTGAGTTTAAGCGACTGGTCGCAGAGTGA
GCTGGACGCATTGTACCAGTACTGGAGCGTGGAGAGCCCGGGGATGGAGG
CCTTGAGGGAGCACTGGGTTGGGGAGAAGAGGCTCCAGGACCCTTCCGTC
GGCACCTCCATCGGCACTTCCGTCACGACCTCCGGGGGCAGTGGGGGAGG
GAGGTGGGGAGGACAGACTGCTGCTGCTGCTGCTACTACTACTGCTACTG
CT
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Coding sequence (CDS) from alignment at scaffold_37:88308..89009-

>mRNA_9744 ID=mRNA_9744|Name=jgi.p|Nanoce1779_2|607009|organism=Nannochloropsis oceanica|type=CDS|length=702bp|location=Sequence derived from alignment at scaffold_37:88308..89009- (Nannochloropsis oceanica)
ATGCTCCCTCCCAAGACCCAAGTGAGGAAAGGAGAGAAGGGAGGAAGGGA
AGGAGGGAAGAGAGGGGTTATGTATTCTGACCGTAACCAAGGCACAGGCC
CGGATACGAAGGGAGGGAAGAAGGGCGGGAAGCAGGAGGGGTTTCCCCAA
CCACCCATACCATCACCAGCAAATCCATCAGCAACACCCAAAAAAAGAAC
AGCAACAGTAGCAACAGCAACAGCAATAACATCCACATCAGCAGCAGGCA
CAGCAGCAACAACACCACCACCAGCGACACCACCAACAAGAGCAATTAAA
GAGAAAAAAGAAGACAAGGAGGGGGTTGGGGGAGGGCCTAAGAAATTCCA
TTACTTGGGCGAGCAAAAAAAGCTGGTGAGGACGTATGCAAGGTTCACTT
TGGGGCTAGGCGCTAACTGGAGCCGGGACTTGAGGGAGGTGGTGAGCGCG
CGGGGTGTGGCGCTGAGTGACTTGAGTTTAAGCGACTGGTCGCAGAGTGA
GCTGGACGCATTGTACCAGTACTGGAGCGTGGAGAGCCCGGGGATGGAGG
CCTTGAGGGAGCACTGGGTTGGGGAGAAGAGGCTCCAGGACCCTTCCGTC
GGCACCTCCATCGGCACTTCCGTCACGACCTCCGGGGGCAGTGGGGGAGG
GAGGTGGGGAGGACAGACTGCTGCTGCTGCTGCTACTACTACTGCTACTG
CT
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Synonyms
Publications