jgi.p|Nanoce1779_2|276675, mRNA_9743 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|276675
Unique Name	mRNA_9743
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	655
Alignment location	scaffold_37:84703..86266 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	276761
Track	FilteredModels2
ProteinId	276675

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_37	supercontig	scaffold_37:84703..86266 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|276675	gene_9743	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|276675	mRNA_9743-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_9743	CDS_9743	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_37:84703..86266+
coding sequence from alignment at scaffold_37:84703..86266+

mRNA sequence

>mRNA_9743 ID=mRNA_9743|Name=jgi.p|Nanoce1779_2|276675|organism=Nannochloropsis oceanica|type=mRNA|length=655bp
ACAGCCACTACCGCTACCACCACTTCTCCACCAACAACAATGACGAAGCA
TGGCACCTTCGACCCTGCCAAATCCCAGGTCTCCCACGAGGCCCAGCTCC
TGTGGCTCCGGTCACCCATCACGGGAGATCTGACCGAGGTGCCCGGCATC
GGCCCCAAACATGCCGAGCATCTGCACGCTAAGGATATTCACACCACCCA
TCAGCTCATCGGCGAGTACCTCAAGATGAAGGGCAAGGACGTCGATCCCA
AGATGCATGCGCAGCATTTCTATGATCATATTCAGGCGTACGGAGTCAGC
TCTCACCGTACGGACGTGGTGGATGCCATCGCGTCGAAGGTCTCCATGTG
GCTGCCCGGCATGTATGATGCTTCTGCCTTTCATCACACCGCTGGCCCCA
CCACGGAGGGAAAGAACGAGCATGAGCTTATTGCTGTTGCTGCCACTGAT
ACTACAGCTGCTACTGCTGCTGCTGCTGCTGCTGTTGCTGTTGCTGCTGT
TGCTGCTGTTGCTGCTGCTGCTGTTCCTACCTCGGAGGAGGAGGGCGGAA
AAAAGGAGGTGGAGGGGGCGACAGCTGTGGAAATGGCGCCTGAAGCATCA
CCCGTGGAAACGAATTAGAGATAACGGACGAAAGAAGGAGGTGAGGAGGT
GAGGG

protein sequence of jgi.p|Nanoce1779_2|276675

>mRNA_9743-protein ID=mRNA_9743-protein|Name=jgi.p|Nanoce1779_2|276675|organism=Nannochloropsis oceanica|type=polypeptide|length=193bp
MTKHGTFDPAKSQVSHEAQLLWLRSPITGDLTEVPGIGPKHAEHLHAKDI
HTTHQLIGEYLKMKGKDVDPKMHAQHFYDHIQAYGVSSHRTDVVDAIASK
VSMWLPGMYDASAFHHTAGPTTEGKNEHELIAVAATDTTAATAAAAAAVA
VAAVAAVAAAAVPTSEEEGGKKEVEGATAVEMAPEASPVETN*

mRNA from alignment at scaffold_37:84703..86266+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9743 ID=mRNA_9743|Name=jgi.p|Nanoce1779_2|276675|organism=Nannochloropsis oceanica|type=mRNA|length=1564bp|location=Sequence derived from alignment at scaffold_37:84703..86266+ (Nannochloropsis oceanica)
ACAGCCACTACCGCTACCACCACTTCTCCACCAACAACAATGACGGTACG
TACCGTGCTCCCTTGTGTGTGCGTCAATACGTGCCCGTCTCGTTCTTTTC
CTCTTCCCATCCGCTTCCATTTCCCAACCACCAAACCCGTCTCTTTTATC
TTCATCTCTCTTGCACAGAAGCATGGCACCTTCGACCCTGCCAAATCCCA
GGTCTCCCACGAGGCCCAGCTCCTGTGGTAGGTACATGCATGGCCCGTCC
ACCTGCTTATTTGCTGTCTGCGTGCGTGGAGCGCTGGGTTGACGTATCGT
GGCCTTTCTCTTCCCTCTCCATGCTTTTCTTCCTTCCAACTTTCTTCCCT
TCCGCTGCCCTCGTCCCCTCCTCCCCCCCTACTCTCTGTCCTTCTCTCGC
CTAACGTCCTTCTCTCCCTCTTGTGCATCGTTATCTTCGCTGTCTTATTT
CTCTTCTGTGTGTCTATTCCACACATCCGTCCAACCACATGGCACCATTT
ACAGGCTCCGGTCACCCATCACGGGAGATCTGACCGAGGTGCCCGGCATC
GGTACGTCCCTCTTCTCCTCCCTCCCTCCATCCTTCCTTCCCTTTCTCGT
TCCCTCCCTCCCTCGTTCTATCTCATTTCACCTTCCCACCTTCCTTCCTC
TTCCTACCTCCCTTTCCACCTCTTCATTTCTCCTGCCAGGCCCCAAACAT
GCCGAGCATCTGCACGCTAAGGATATTCACACCACCCATCAGCTCATCGG
CGAGGTACCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTGCCTTGC
TCCTTTGCTCATTTCTCTTCTCATGACATCAAGAATTGCTAACCCTCCTG
TCCCTCTCTCCCTTCCTCAGTACCTCAAGATGAAGGGCAAGGACGTCGAT
CCCAAGGTCAACAAATATCTCACAGGAGGGGGGGAAGGAGGGAGGGAGGG
AGGGAGGGAGAGAGGGGCATGAAAGCACATGAAGGCCTCCCACCCCGGCA
TCTCGCCCCTCCCTCCCTCCCGCCTTCCTTCCTCCCTCAGATGCATGCGC
AGCATTTCTATGATCATATTCAGGCGTACGGAGTCAGCTCTCACCGTACG
GACGTGGTGGATGCCATCGCGTCGAAGGTCAGGAGGGGGAGGAAGGGAGG
GGGAAGAAGGAGAAGGAGAAGGAGAAAGGGACTATGGGGTTTTCTTCACA
GCCCGAACCACTCCCTCCCTCCCCCCCCTCCCCCCTTCCCTCCCTCAGGT
CTCCATGTGGCTGCCCGGCATGTATGATGCTTCTGCCTTTCATCACACCG
CTGGCCCCACCACGGAGGGAAAGAACGAGCATGAGCTTATTGCTGTTGCT
GCCACTGATACTACAGCTGCTACTGCTGCTGCTGCTGCTGCTGTTGCTGT
TGCTGCTGTTGCTGCTGTTGCTGCTGCTGCTGTTCCTACCTCGGAGGAGG
AGGGCGGAAAAAAGGAGGTGGAGGGGGCGACAGCTGTGGAAATGGCGCCT
GAAGCATCACCCGTGGAAACGAATTAGAGATAACGGACGAAAGAAGGAGG
TGAGGAGGTGAGGG

Coding sequence (CDS) from alignment at scaffold_37:84703..86266+

>mRNA_9743 ID=mRNA_9743|Name=jgi.p|Nanoce1779_2|276675|organism=Nannochloropsis oceanica|type=CDS|length=4053bp|location=Sequence derived from alignment at scaffold_37:84703..86266+ (Nannochloropsis oceanica)
ATGACGAAGCATGGCACCTTCGACCCTGCCAAATCCCAGGTCTCCCACGA
GGCCCAGCTCCTGTGGCTCCGGTCACCCATCACGGGAGATCTGACCGAGG
TGCCCGGCATCGGCCCCAAACATGCCGAGCATCTGCACGCTAAGGATATT
CACACCACCCATCAGCTCATCGGCGAGTACCTCAAGATGAAGGGCAAGGA
CGTCGATCCCAAGATGCATGCGCAGCATTTCTATGATCATATTCAGGCGT
ACGGAGTCAGCTCTCACCGTACGGACGTGGTGGATGCCATCGCGTCGAAG
GTCTCCATGTGGCTGCCCGGCATGTATGATGCTTCTGCCTTTCATCACAC
CGCTGGCCCCACCACGGAGGGAAAGAACGAGCATGAGCTTATTGCTGTTG
CTGCCACTGATACTACAGCTGCTACTGCTGCTGCTGCTGCTGCTGTTGCT
GTTGCTGCTGTTGCTGCTGTTGCTGCTGCTGCTGTTCCTACCTCGGAGGA
GGAGGGCGGAAAAAAGGAGGTGGAGGGGGCGACAGCTGTGGAAATGGCGC
CTGAAGCATCACCCGTGGAAACGAATTAGATGACGAAGCATGGCACCTTC
GACCCTGCCAAATCCCAGGTCTCCCACGAGGCCCAGCTCCTGTGGCTCCG
GTCACCCATCACGGGAGATCTGACCGAGGTGCCCGGCATCGGCCCCAAAC
ATGCCGAGCATCTGCACGCTAAGGATATTCACACCACCCATCAGCTCATC
GGCGAGTACCTCAAGATGAAGGGCAAGGACGTCGATCCCAAGATGCATGC
GCAGCATTTCTATGATCATATTCAGGCGTACGGAGTCAGCTCTCACCGTA
CGGACGTGGTGGATGCCATCGCGTCGAAGGTCTCCATGTGGCTGCCCGGC
ATGTATGATGCTTCTGCCTTTCATCACACCGCTGGCCCCACCACGGAGGG
AAAGAACGAGCATGAGCTTATTGCTGTTGCTGCCACTGATACTACAGCTG
CTACTGCTGCTGCTGCTGCTGCTGTTGCTGTTGCTGCTGTTGCTGCTGTT
GCTGCTGCTGCTGTTCCTACCTCGGAGGAGGAGGGCGGAAAAAAGGAGGT
GGAGGGGGCGACAGCTGTGGAAATGGCGCCTGAAGCATCACCCGTGGAAA
CGAATTAGATGACGAAGCATGGCACCTTCGACCCTGCCAAATCCCAGGTC
TCCCACGAGGCCCAGCTCCTGTGGCTCCGGTCACCCATCACGGGAGATCT
GACCGAGGTGCCCGGCATCGGCCCCAAACATGCCGAGCATCTGCACGCTA
AGGATATTCACACCACCCATCAGCTCATCGGCGAGTACCTCAAGATGAAG
GGCAAGGACGTCGATCCCAAGATGCATGCGCAGCATTTCTATGATCATAT
TCAGGCGTACGGAGTCAGCTCTCACCGTACGGACGTGGTGGATGCCATCG
CGTCGAAGGTCTCCATGTGGCTGCCCGGCATGTATGATGCTTCTGCCTTT
CATCACACCGCTGGCCCCACCACGGAGGGAAAGAACGAGCATGAGCTTAT
TGCTGTTGCTGCCACTGATACTACAGCTGCTACTGCTGCTGCTGCTGCTG
CTGTTGCTGTTGCTGCTGTTGCTGCTGTTGCTGCTGCTGCTGTTCCTACC
TCGGAGGAGGAGGGCGGAAAAAAGGAGGTGGAGGGGGCGACAGCTGTGGA
AATGGCGCCTGAAGCATCACCCGTGGAAACGAATTAGATGACGAAGCATG
GCACCTTCGACCCTGCCAAATCCCAGGTCTCCCACGAGGCCCAGCTCCTG
TGGCTCCGGTCACCCATCACGGGAGATCTGACCGAGGTGCCCGGCATCGG
CCCCAAACATGCCGAGCATCTGCACGCTAAGGATATTCACACCACCCATC
AGCTCATCGGCGAGTACCTCAAGATGAAGGGCAAGGACGTCGATCCCAAG
ATGCATGCGCAGCATTTCTATGATCATATTCAGGCGTACGGAGTCAGCTC
TCACCGTACGGACGTGGTGGATGCCATCGCGTCGAAGGTCTCCATGTGGC
TGCCCGGCATGTATGATGCTTCTGCCTTTCATCACACCGCTGGCCCCACC
ACGGAGGGAAAGAACGAGCATGAGCTTATTGCTGTTGCTGCCACTGATAC
TACAGCTGCTACTGCTGCTGCTGCTGCTGCTGTTGCTGTTGCTGCTGTTG
CTGCTGTTGCTGCTGCTGCTGTTCCTACCTCGGAGGAGGAGGGCGGAAAA
AAGGAGGTGGAGGGGGCGACAGCTGTGGAAATGGCGCCTGAAGCATCACC
CGTGGAAACGAATTAGATGACGAAGCATGGCACCTTCGACCCTGCCAAAT
CCCAGGTCTCCCACGAGGCCCAGCTCCTGTGGCTCCGGTCACCCATCACG
GGAGATCTGACCGAGGTGCCCGGCATCGGCCCCAAACATGCCGAGCATCT
GCACGCTAAGGATATTCACACCACCCATCAGCTCATCGGCGAGTACCTCA
AGATGAAGGGCAAGGACGTCGATCCCAAGATGCATGCGCAGCATTTCTAT
GATCATATTCAGGCGTACGGAGTCAGCTCTCACCGTACGGACGTGGTGGA
TGCCATCGCGTCGAAGGTCTCCATGTGGCTGCCCGGCATGTATGATGCTT
CTGCCTTTCATCACACCGCTGGCCCCACCACGGAGGGAAAGAACGAGCAT
GAGCTTATTGCTGTTGCTGCCACTGATACTACAGCTGCTACTGCTGCTGC
TGCTGCTGCTGTTGCTGTTGCTGCTGTTGCTGCTGTTGCTGCTGCTGCTG
TTCCTACCTCGGAGGAGGAGGGCGGAAAAAAGGAGGTGGAGGGGGCGACA
GCTGTGGAAATGGCGCCTGAAGCATCACCCGTGGAAACGAATTAGATGAC
GAAGCATGGCACCTTCGACCCTGCCAAATCCCAGGTCTCCCACGAGGCCC
AGCTCCTGTGGCTCCGGTCACCCATCACGGGAGATCTGACCGAGGTGCCC
GGCATCGGCCCCAAACATGCCGAGCATCTGCACGCTAAGGATATTCACAC
CACCCATCAGCTCATCGGCGAGTACCTCAAGATGAAGGGCAAGGACGTCG
ATCCCAAGATGCATGCGCAGCATTTCTATGATCATATTCAGGCGTACGGA
GTCAGCTCTCACCGTACGGACGTGGTGGATGCCATCGCGTCGAAGGTCTC
CATGTGGCTGCCCGGCATGTATGATGCTTCTGCCTTTCATCACACCGCTG
GCCCCACCACGGAGGGAAAGAACGAGCATGAGCTTATTGCTGTTGCTGCC
ACTGATACTACAGCTGCTACTGCTGCTGCTGCTGCTGCTGTTGCTGTTGC
TGCTGTTGCTGCTGTTGCTGCTGCTGCTGTTCCTACCTCGGAGGAGGAGG
GCGGAAAAAAGGAGGTGGAGGGGGCGACAGCTGTGGAAATGGCGCCTGAA
GCATCACCCGTGGAAACGAATTAGATGACGAAGCATGGCACCTTCGACCC
TGCCAAATCCCAGGTCTCCCACGAGGCCCAGCTCCTGTGGCTCCGGTCAC
CCATCACGGGAGATCTGACCGAGGTGCCCGGCATCGGCCCCAAACATGCC
GAGCATCTGCACGCTAAGGATATTCACACCACCCATCAGCTCATCGGCGA
GTACCTCAAGATGAAGGGCAAGGACGTCGATCCCAAGATGCATGCGCAGC
ATTTCTATGATCATATTCAGGCGTACGGAGTCAGCTCTCACCGTACGGAC
GTGGTGGATGCCATCGCGTCGAAGGTCTCCATGTGGCTGCCCGGCATGTA
TGATGCTTCTGCCTTTCATCACACCGCTGGCCCCACCACGGAGGGAAAGA
ACGAGCATGAGCTTATTGCTGTTGCTGCCACTGATACTACAGCTGCTACT
GCTGCTGCTGCTGCTGCTGTTGCTGTTGCTGCTGTTGCTGCTGTTGCTGC
TGCTGCTGTTCCTACCTCGGAGGAGGAGGGCGGAAAAAAGGAGGTGGAGG
GGGCGACAGCTGTGGAAATGGCGCCTGAAGCATCACCCGTGGAAACGAAT
TAG

Synonyms

Publications