jgi.p|Nanoce1779_2|276532, mRNA_9739 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|276532
Unique Name	mRNA_9739
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2218
Alignment location	scaffold_37:70151..72453 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	276618
Track	FilteredModels2
ProteinId	276532

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_37	supercontig	scaffold_37:70151..72453 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|276532	gene_9739	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|276532	mRNA_9739-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_9739	CDS_9739	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_37:70151..72453-
coding sequence from alignment at scaffold_37:70151..72453-

mRNA sequence

>mRNA_9739 ID=mRNA_9739|Name=jgi.p|Nanoce1779_2|276532|organism=Nannochloropsis oceanica|type=mRNA|length=2218bp
CGGGAAAGCTTGACGGTTGGTGCTTTAATGAATACACGTCTCATCGGGTT
TTCCCCGACGACTTACATCCACAGTGGTCTCGTGGAAATTATCGTACTTA
ACTTGGGGCTGGATGCCAAAGTCATCGATGTGGAGCAATTCACAATCTTC
GTGCTCATGGCCCTTGTAACAACATTCGCAACAAGCCCAGGTTTGTTTGC
AGCACTCTCTCCTCACTCTGTTATTTCTCCCTTGAGTTGCATAATTATTT
GATGTACGTCCTCCGTTAATGTGCTTCCCTGGAGCCCATTACAAAAATAT
TTTTCGGAACCGCTCTCATTTCATCTTGGCCCAATCAATCTCAGTTGTCA
CGTGGTTGTACCCTCCGGAAAAGCGCGTCAAGTTTGGCAGTCGAAAGGTA
AGAAAGCGACGGCTTCGAAAAGGAGCAAATACAACTGCGACATTAGAACC
GCCGATTTTCAGGCGAACTCGGACAGCTGTTTACCCTTCGGCCGAAGAAG
CCGCCAAACGTGCCGCTACTGCTGGGTGGGGAACACGAGGGTTGGCAGGA
GAAGAGGAAGAAGAGGAGCGAGGAATTGAGGATGAAAGCACCAAGAAAGC
TGACGGGGAGCGTCTTGGCTCTATGAAGTTGATGCTAGTGGCTCAACGCA
TGGCGGATGTACCGGGCGTGGCATTGCTGACTGACTTATTGCATCCCGAT
TTCGTGTCGTGTGTACGTTTTGTGGAGTCTGAGACCACGCCCTTGTCAAT
TCTCATGTCGCAAGGCACATTGAAGATGGCGACAAGCATGGACCCTACGC
TGCAGATGATGCTCACATGCGGCTATCTTGCCGGGCTACCCGTGGACGTG
TACTTGAAGGTCTGCAAATCGGAGGACTTTGCCAAAGAACTCTGCCGGCG
GGCCACTGCGCAAGACAGCTCCATGGTCTTGGTTCCTTGTCGACGGGAAC
ATGCCCCGCTCGGCGACTATCACGTGCGCTTTGTCAAAGGTGTCATTCAA
AGATGTTCCAAGCCGCTGTTACTATTCTGGGATTACCGTTTGGGTGAGAG
CTTGTTTTCTCTGCCAGAAGGTAAGAAGCAGCAAAAGACTGTGTTGCTAG
TCTTTCAGGGGGGGCGGAACGATCGCGAGGCCCTGCGACTGGTGCATCGA
TTTGTGCAAGCACAAGATGTGGCCGTGCATGTCTTGGTGACACAGCGGGC
AGGGCTGCTCCCGCCTGAAGATCAAGCCGAGCTAGCGCATCTTGAGCGAT
GCTATGTATCGACTGCCGCCGAGGAGAAGGGGAACGAGCAGGGAAAGAGA
GGAGGGTGGGTTGTGGTGTCGCGATATGATGCTGCTGACAGGACTGGCAA
CGGGAATGACAGTTTTAATGGCCGAAGGCTCCAGTACCCTGAAGGCGGAG
AAATGGAGGCCAGCAGCATTGATGACGAAGATAGTGATGTTACACAACGC
GTGTTGAACGTCTGCAAGCGCGAGGCGGCGCATCTCCTTGTTCTTGGAGC
CTCCTCTGAGGCTGCGGTAGCCGCGGGCATGGACACTGCCATAGTGGCGA
CAGCGGCTCGCGCCTCTCGCTTCTGCAGCGTTCCTCACGGTGTGGAAATC
AATTTTCGCAAGCGCCTCTTGTCTGCAAAGCTGGGACAGGCCTTGATGGA
TTCGGAGATAAACGTGTCATTGTTGGTGGTGCTGGTTCCGTCCTTGCTAC
CTGAGAAAGAAGGGCTGGGGAAAGAAAGGATCATCAAGCAGCAGGGATCA
GATTTGCGAACATTGAAACTGATCAGTGACGACGATGACGGGGAAGAAGA
AGACGACTCGGACGATGAGGAGGATTTAGAGGAGGGAAATGTATGGCCAG
GAGGGGAGGAGGCAGAATTCGGGCAGCGGGAGAAAACCGAGGACTGGATG
CAGCGGAAATCAGAGTATCAGATGGACAGCAGTCATTCATTTGCGTCATC
ACCGTTCAAAATGGAGAAAGAGAGTCAGGATGAGGTTACGGAGACAAGCT
CAGACCTCGGTGGTATAAAGAAATGAAGTCGCACTGGACAAGGGAAGGCT
TTCTGAGAGGATGGAGAATGATTAAGAAGCACCAAATCGTCGAACGTCGA
AATACAAGTGAACAAGGATTACAGTCTACAGTTCGGGAGGATAGGCCGAG
GCCTGCAGACGATAAAGGCGGATTGCTTGGGTTTCAGTGACATCATTTAG
CATCATTTTGCGGTAGAA

protein sequence of jgi.p|Nanoce1779_2|276532

>mRNA_9739-protein ID=mRNA_9739-protein|Name=jgi.p|Nanoce1779_2|276532|organism=Nannochloropsis oceanica|type=polypeptide|length=586bp
MCFPGAHYKNIFRNRSHFILAQSISVVTWLYPPEKRVKFGSRKVRKRRLR
KGANTTATLEPPIFRRTRTAVYPSAEEAAKRAATAGWGTRGLAGEEEEEE
RGIEDESTKKADGERLGSMKLMLVAQRMADVPGVALLTDLLHPDFVSCVR
FVESETTPLSILMSQGTLKMATSMDPTLQMMLTCGYLAGLPVDVYLKVCK
SEDFAKELCRRATAQDSSMVLVPCRREHAPLGDYHVRFVKGVIQRCSKPL
LLFWDYRLGESLFSLPEGKKQQKTVLLVFQGGRNDREALRLVHRFVQAQD
VAVHVLVTQRAGLLPPEDQAELAHLERCYVSTAAEEKGNEQGKRGGWVVV
SRYDAADRTGNGNDSFNGRRLQYPEGGEMEASSIDDEDSDVTQRVLNVCK
REAAHLLVLGASSEAAVAAGMDTAIVATAARASRFCSVPHGVEINFRKRL
LSAKLGQALMDSEINVSLLVVLVPSLLPEKEGLGKERIIKQQGSDLRTLK
LISDDDDGEEEDDSDDEEDLEEGNVWPGGEEAEFGQREKTEDWMQRKSEY
QMDSSHSFASSPFKMEKESQDEVTETSSDLGGIKK*

mRNA from alignment at scaffold_37:70151..72453-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9739 ID=mRNA_9739|Name=jgi.p|Nanoce1779_2|276532|organism=Nannochloropsis oceanica|type=mRNA|length=2303bp|location=Sequence derived from alignment at scaffold_37:70151..72453- (Nannochloropsis oceanica)
CGGGAAAGCTTGACGGTTGGTGCTTTAATGAATACACGGTGTGTGATAAC
AAGAAAATAAGGAAGACGCACGGGAAACGAGTGGGAAACTTTACAATATA
GCATATCGTCACACATCTCTAAGTCTCATCGGGTTTTCCCCGACGACTTA
CATCCACAGTGGTCTCGTGGAAATTATCGTACTTAACTTGGGGCTGGATG
CCAAAGTCATCGATGTGGAGCAATTCACAATCTTCGTGCTCATGGCCCTT
GTAACAACATTCGCAACAAGCCCAGGTTTGTTTGCAGCACTCTCTCCTCA
CTCTGTTATTTCTCCCTTGAGTTGCATAATTATTTGATGTACGTCCTCCG
TTAATGTGCTTCCCTGGAGCCCATTACAAAAATATTTTTCGGAACCGCTC
TCATTTCATCTTGGCCCAATCAATCTCAGTTGTCACGTGGTTGTACCCTC
CGGAAAAGCGCGTCAAGTTTGGCAGTCGAAAGGTAAGAAAGCGACGGCTT
CGAAAAGGAGCAAATACAACTGCGACATTAGAACCGCCGATTTTCAGGCG
AACTCGGACAGCTGTTTACCCTTCGGCCGAAGAAGCCGCCAAACGTGCCG
CTACTGCTGGGTGGGGAACACGAGGGTTGGCAGGAGAAGAGGAAGAAGAG
GAGCGAGGAATTGAGGATGAAAGCACCAAGAAAGCTGACGGGGAGCGTCT
TGGCTCTATGAAGTTGATGCTAGTGGCTCAACGCATGGCGGATGTACCGG
GCGTGGCATTGCTGACTGACTTATTGCATCCCGATTTCGTGTCGTGTGTA
CGTTTTGTGGAGTCTGAGACCACGCCCTTGTCAATTCTCATGTCGCAAGG
CACATTGAAGATGGCGACAAGCATGGACCCTACGCTGCAGATGATGCTCA
CATGCGGCTATCTTGCCGGGCTACCCGTGGACGTGTACTTGAAGGTCTGC
AAATCGGAGGACTTTGCCAAAGAACTCTGCCGGCGGGCCACTGCGCAAGA
CAGCTCCATGGTCTTGGTTCCTTGTCGACGGGAACATGCCCCGCTCGGCG
ACTATCACGTGCGCTTTGTCAAAGGTGTCATTCAAAGATGTTCCAAGCCG
CTGTTACTATTCTGGGATTACCGTTTGGGTGAGAGCTTGTTTTCTCTGCC
AGAAGGTAAGAAGCAGCAAAAGACTGTGTTGCTAGTCTTTCAGGGGGGGC
GGAACGATCGCGAGGCCCTGCGACTGGTGCATCGATTTGTGCAAGCACAA
GATGTGGCCGTGCATGTCTTGGTGACACAGCGGGCAGGGCTGCTCCCGCC
TGAAGATCAAGCCGAGCTAGCGCATCTTGAGCGATGCTATGTATCGACTG
CCGCCGAGGAGAAGGGGAACGAGCAGGGAAAGAGAGGAGGGTGGGTTGTG
GTGTCGCGATATGATGCTGCTGACAGGACTGGCAACGGGAATGACAGTTT
TAATGGCCGAAGGCTCCAGTACCCTGAAGGCGGAGAAATGGAGGCCAGCA
GCATTGATGACGAAGATAGTGATGTTACACAACGCGTGTTGAACGTCTGC
AAGCGCGAGGCGGCGCATCTCCTTGTTCTTGGAGCCTCCTCTGAGGCTGC
GGTAGCCGCGGGCATGGACACTGCCATAGTGGCGACAGCGGCTCGCGCCT
CTCGCTTCTGCAGCGTTCCTCACGGTGTGGAAATCAATTTTCGCAAGCGC
CTCTTGTCTGCAAAGCTGGGACAGGCCTTGATGGATTCGGAGATAAACGT
GTCATTGTTGGTGGTGCTGGTTCCGTCCTTGCTACCTGAGAAAGAAGGGC
TGGGGAAAGAAAGGATCATCAAGCAGCAGGGATCAGATTTGCGAACATTG
AAACTGATCAGTGACGACGATGACGGGGAAGAAGAAGACGACTCGGACGA
TGAGGAGGATTTAGAGGAGGGAAATGTATGGCCAGGAGGGGAGGAGGCAG
AATTCGGGCAGCGGGAGAAAACCGAGGACTGGATGCAGCGGAAATCAGAG
TATCAGATGGACAGCAGTCATTCATTTGCGTCATCACCGTTCAAAATGGA
GAAAGAGAGTCAGGATGAGGTTACGGAGACAAGCTCAGACCTCGGTGGTA
TAAAGAAATGAAGTCGCACTGGACAAGGGAAGGCTTTCTGAGAGGATGGA
GAATGATTAAGAAGCACCAAATCGTCGAACGTCGAAATACAAGTGAACAA
GGATTACAGTCTACAGTTCGGGAGGATAGGCCGAGGCCTGCAGACGATAA
AGGCGGATTGCTTGGGTTTCAGTGACATCATTTAGCATCATTTTGCGGTA
GAA

Coding sequence (CDS) from alignment at scaffold_37:70151..72453-

>mRNA_9739 ID=mRNA_9739|Name=jgi.p|Nanoce1779_2|276532|organism=Nannochloropsis oceanica|type=CDS|length=1758bp|location=Sequence derived from alignment at scaffold_37:70151..72453- (Nannochloropsis oceanica)
ATGTGCTTCCCTGGAGCCCATTACAAAAATATTTTTCGGAACCGCTCTCA
TTTCATCTTGGCCCAATCAATCTCAGTTGTCACGTGGTTGTACCCTCCGG
AAAAGCGCGTCAAGTTTGGCAGTCGAAAGGTAAGAAAGCGACGGCTTCGA
AAAGGAGCAAATACAACTGCGACATTAGAACCGCCGATTTTCAGGCGAAC
TCGGACAGCTGTTTACCCTTCGGCCGAAGAAGCCGCCAAACGTGCCGCTA
CTGCTGGGTGGGGAACACGAGGGTTGGCAGGAGAAGAGGAAGAAGAGGAG
CGAGGAATTGAGGATGAAAGCACCAAGAAAGCTGACGGGGAGCGTCTTGG
CTCTATGAAGTTGATGCTAGTGGCTCAACGCATGGCGGATGTACCGGGCG
TGGCATTGCTGACTGACTTATTGCATCCCGATTTCGTGTCGTGTGTACGT
TTTGTGGAGTCTGAGACCACGCCCTTGTCAATTCTCATGTCGCAAGGCAC
ATTGAAGATGGCGACAAGCATGGACCCTACGCTGCAGATGATGCTCACAT
GCGGCTATCTTGCCGGGCTACCCGTGGACGTGTACTTGAAGGTCTGCAAA
TCGGAGGACTTTGCCAAAGAACTCTGCCGGCGGGCCACTGCGCAAGACAG
CTCCATGGTCTTGGTTCCTTGTCGACGGGAACATGCCCCGCTCGGCGACT
ATCACGTGCGCTTTGTCAAAGGTGTCATTCAAAGATGTTCCAAGCCGCTG
TTACTATTCTGGGATTACCGTTTGGGTGAGAGCTTGTTTTCTCTGCCAGA
AGGTAAGAAGCAGCAAAAGACTGTGTTGCTAGTCTTTCAGGGGGGGCGGA
ACGATCGCGAGGCCCTGCGACTGGTGCATCGATTTGTGCAAGCACAAGAT
GTGGCCGTGCATGTCTTGGTGACACAGCGGGCAGGGCTGCTCCCGCCTGA
AGATCAAGCCGAGCTAGCGCATCTTGAGCGATGCTATGTATCGACTGCCG
CCGAGGAGAAGGGGAACGAGCAGGGAAAGAGAGGAGGGTGGGTTGTGGTG
TCGCGATATGATGCTGCTGACAGGACTGGCAACGGGAATGACAGTTTTAA
TGGCCGAAGGCTCCAGTACCCTGAAGGCGGAGAAATGGAGGCCAGCAGCA
TTGATGACGAAGATAGTGATGTTACACAACGCGTGTTGAACGTCTGCAAG
CGCGAGGCGGCGCATCTCCTTGTTCTTGGAGCCTCCTCTGAGGCTGCGGT
AGCCGCGGGCATGGACACTGCCATAGTGGCGACAGCGGCTCGCGCCTCTC
GCTTCTGCAGCGTTCCTCACGGTGTGGAAATCAATTTTCGCAAGCGCCTC
TTGTCTGCAAAGCTGGGACAGGCCTTGATGGATTCGGAGATAAACGTGTC
ATTGTTGGTGGTGCTGGTTCCGTCCTTGCTACCTGAGAAAGAAGGGCTGG
GGAAAGAAAGGATCATCAAGCAGCAGGGATCAGATTTGCGAACATTGAAA
CTGATCAGTGACGACGATGACGGGGAAGAAGAAGACGACTCGGACGATGA
GGAGGATTTAGAGGAGGGAAATGTATGGCCAGGAGGGGAGGAGGCAGAAT
TCGGGCAGCGGGAGAAAACCGAGGACTGGATGCAGCGGAAATCAGAGTAT
CAGATGGACAGCAGTCATTCATTTGCGTCATCACCGTTCAAAATGGAGAA
AGAGAGTCAGGATGAGGTTACGGAGACAAGCTCAGACCTCGGTGGTATAA
AGAAATGA

Synonyms

Publications