jgi.p|Nanoce1779_2|533443, mRNA_9736 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|533443
Unique Name	mRNA_9736
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1188
Alignment location	scaffold_37:59127..60314 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	533529
Track	FilteredModels2
ProteinId	533443

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_37	supercontig	scaffold_37:59127..60314 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|533443	gene_9736	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|533443	mRNA_9736-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_9736	CDS_9736	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_37:59127..60314+
coding sequence from alignment at scaffold_37:59127..60314+

mRNA sequence

>mRNA_9736 ID=mRNA_9736|Name=jgi.p|Nanoce1779_2|533443|organism=Nannochloropsis oceanica|type=mRNA|length=1188bp
ATGATTGGGAGGTTGAAGGTCTTGAGGGTGGCAGAGGCAGGGGTGAGCAC
GGAGGGGGTGAGGAGTCTGGTAAGGGCGTTGTGTGTGGGGGGAGGGGGAG
TGTTGGAGTGTCTGGATCTGAGTGATAATCACTTGTATCCGCAGGGAGCA
GAGGCGATGGCTGTGGCCGTGGCACAGGGGGCAATGCCCGGGCTACGACG
GTTGGTCTTGTCACGGAATAGGATATACGGGGATGGCACGGCGGCGTTGA
TGGAGGCATTGGGTCAGGGGCAGTGTCCGCTGTTGTCGGTGCTGGACCTG
AGGGGGAACAAGATCGGAGCCAAGGGCGCGGCGAGTGTGGGAGGGCTACT
AACAGCAGGGACATGCCCGAAGCTGCGGGAGCTAGACGTGGGGGGGAACT
ACCTGTATGCCGAGGGGGTGGCTTTGCTAGCCAGTGCGTTGGCCCAACGG
CCGCAGCCGGAACTAAGGACGTTGGACGTGGAGGATAATGCAATGACAGC
CGAAGGGGCTTTCTTGTTGTCGGAGGCTATGAGGAGGGGGGCGGTGGTGG
GGCTGGAGGTGTTGAATCTGGGGAGGAATGGGATTGGTGGCGAAGGGGTG
GGTTTCGTGATGGCTGCGCTTGCGGAGGGGTGGTGCCCGAGGGTGAGGAA
GTTGAGCCTGCGGAGTAACGAGCTGGGTGTTTTTGGGTTTGCGCATGTGG
CGGCGTGTGTGCAGCAGGGGGGAATGAAGCGGGTCGAGAGCTTGGACGTG
GCCGTGAATGGACTCGGAGAGGAGCCAGGGGTTGTCTTCCTGCCGATTGT
GATGAGCTCGGAATGGATGCCGGTGTTGAGGGAGGTGGATATGACGTTTA
ATGGGCTGGAGGGGGACAGGGCGAGGAACCAGGTGGGAACTTTGCAAGCG
GGGAGGGAGGGACGGAAGGAAGGTGGAGTTGTGGTGCGATTAGCGAGGAA
GAGTGCCGTGCCGATCTTTAGGAGGACGCAGTCAGCACCGGCGGCGATAG
TTGTGCACCACCACCACCACCAACACCACCACCACCATCAGCAGCAGCAG
CAGCAGCAGCAGCAGGTCCAGGCCGTGCCACCCCCTCCGGTACAGCAGCA
ACAACAGCAGCAGCAGCATCAGCAGCAGCCCCACGCTGCTTTTTGGGAGA
TGATTGCAGCGGTCGGCAACAATCAGGGCCAGCCTTGA

protein sequence of jgi.p|Nanoce1779_2|533443

>mRNA_9736-protein ID=mRNA_9736-protein|Name=jgi.p|Nanoce1779_2|533443|organism=Nannochloropsis oceanica|type=polypeptide|length=396bp
MIGRLKVLRVAEAGVSTEGVRSLVRALCVGGGGVLECLDLSDNHLYPQGA
EAMAVAVAQGAMPGLRRLVLSRNRIYGDGTAALMEALGQGQCPLLSVLDL
RGNKIGAKGAASVGGLLTAGTCPKLRELDVGGNYLYAEGVALLASALAQR
PQPELRTLDVEDNAMTAEGAFLLSEAMRRGAVVGLEVLNLGRNGIGGEGV
GFVMAALAEGWCPRVRKLSLRSNELGVFGFAHVAACVQQGGMKRVESLDV
AVNGLGEEPGVVFLPIVMSSEWMPVLREVDMTFNGLEGDRARNQVGTLQA
GREGRKEGGVVVRLARKSAVPIFRRTQSAPAAIVVHHHHHQHHHHHQQQQ
QQQQQVQAVPPPPVQQQQQQQQHQQQPHAAFWEMIAAVGNNQGQP*

mRNA from alignment at scaffold_37:59127..60314+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9736 ID=mRNA_9736|Name=jgi.p|Nanoce1779_2|533443|organism=Nannochloropsis oceanica|type=mRNA|length=1188bp|location=Sequence derived from alignment at scaffold_37:59127..60314+ (Nannochloropsis oceanica)
ATGATTGGGAGGTTGAAGGTCTTGAGGGTGGCAGAGGCAGGGGTGAGCAC
GGAGGGGGTGAGGAGTCTGGTAAGGGCGTTGTGTGTGGGGGGAGGGGGAG
TGTTGGAGTGTCTGGATCTGAGTGATAATCACTTGTATCCGCAGGGAGCA
GAGGCGATGGCTGTGGCCGTGGCACAGGGGGCAATGCCCGGGCTACGACG
GTTGGTCTTGTCACGGAATAGGATATACGGGGATGGCACGGCGGCGTTGA
TGGAGGCATTGGGTCAGGGGCAGTGTCCGCTGTTGTCGGTGCTGGACCTG
AGGGGGAACAAGATCGGAGCCAAGGGCGCGGCGAGTGTGGGAGGGCTACT
AACAGCAGGGACATGCCCGAAGCTGCGGGAGCTAGACGTGGGGGGGAACT
ACCTGTATGCCGAGGGGGTGGCTTTGCTAGCCAGTGCGTTGGCCCAACGG
CCGCAGCCGGAACTAAGGACGTTGGACGTGGAGGATAATGCAATGACAGC
CGAAGGGGCTTTCTTGTTGTCGGAGGCTATGAGGAGGGGGGCGGTGGTGG
GGCTGGAGGTGTTGAATCTGGGGAGGAATGGGATTGGTGGCGAAGGGGTG
GGTTTCGTGATGGCTGCGCTTGCGGAGGGGTGGTGCCCGAGGGTGAGGAA
GTTGAGCCTGCGGAGTAACGAGCTGGGTGTTTTTGGGTTTGCGCATGTGG
CGGCGTGTGTGCAGCAGGGGGGAATGAAGCGGGTCGAGAGCTTGGACGTG
GCCGTGAATGGACTCGGAGAGGAGCCAGGGGTTGTCTTCCTGCCGATTGT
GATGAGCTCGGAATGGATGCCGGTGTTGAGGGAGGTGGATATGACGTTTA
ATGGGCTGGAGGGGGACAGGGCGAGGAACCAGGTGGGAACTTTGCAAGCG
GGGAGGGAGGGACGGAAGGAAGGTGGAGTTGTGGTGCGATTAGCGAGGAA
GAGTGCCGTGCCGATCTTTAGGAGGACGCAGTCAGCACCGGCGGCGATAG
TTGTGCACCACCACCACCACCAACACCACCACCACCATCAGCAGCAGCAG
CAGCAGCAGCAGCAGGTCCAGGCCGTGCCACCCCCTCCGGTACAGCAGCA
ACAACAGCAGCAGCAGCATCAGCAGCAGCCCCACGCTGCTTTTTGGGAGA
TGATTGCAGCGGTCGGCAACAATCAGGGCCAGCCTTGA

Coding sequence (CDS) from alignment at scaffold_37:59127..60314+

>mRNA_9736 ID=mRNA_9736|Name=jgi.p|Nanoce1779_2|533443|organism=Nannochloropsis oceanica|type=CDS|length=1188bp|location=Sequence derived from alignment at scaffold_37:59127..60314+ (Nannochloropsis oceanica)
ATGATTGGGAGGTTGAAGGTCTTGAGGGTGGCAGAGGCAGGGGTGAGCAC
GGAGGGGGTGAGGAGTCTGGTAAGGGCGTTGTGTGTGGGGGGAGGGGGAG
TGTTGGAGTGTCTGGATCTGAGTGATAATCACTTGTATCCGCAGGGAGCA
GAGGCGATGGCTGTGGCCGTGGCACAGGGGGCAATGCCCGGGCTACGACG
GTTGGTCTTGTCACGGAATAGGATATACGGGGATGGCACGGCGGCGTTGA
TGGAGGCATTGGGTCAGGGGCAGTGTCCGCTGTTGTCGGTGCTGGACCTG
AGGGGGAACAAGATCGGAGCCAAGGGCGCGGCGAGTGTGGGAGGGCTACT
AACAGCAGGGACATGCCCGAAGCTGCGGGAGCTAGACGTGGGGGGGAACT
ACCTGTATGCCGAGGGGGTGGCTTTGCTAGCCAGTGCGTTGGCCCAACGG
CCGCAGCCGGAACTAAGGACGTTGGACGTGGAGGATAATGCAATGACAGC
CGAAGGGGCTTTCTTGTTGTCGGAGGCTATGAGGAGGGGGGCGGTGGTGG
GGCTGGAGGTGTTGAATCTGGGGAGGAATGGGATTGGTGGCGAAGGGGTG
GGTTTCGTGATGGCTGCGCTTGCGGAGGGGTGGTGCCCGAGGGTGAGGAA
GTTGAGCCTGCGGAGTAACGAGCTGGGTGTTTTTGGGTTTGCGCATGTGG
CGGCGTGTGTGCAGCAGGGGGGAATGAAGCGGGTCGAGAGCTTGGACGTG
GCCGTGAATGGACTCGGAGAGGAGCCAGGGGTTGTCTTCCTGCCGATTGT
GATGAGCTCGGAATGGATGCCGGTGTTGAGGGAGGTGGATATGACGTTTA
ATGGGCTGGAGGGGGACAGGGCGAGGAACCAGGTGGGAACTTTGCAAGCG
GGGAGGGAGGGACGGAAGGAAGGTGGAGTTGTGGTGCGATTAGCGAGGAA
GAGTGCCGTGCCGATCTTTAGGAGGACGCAGTCAGCACCGGCGGCGATAG
TTGTGCACCACCACCACCACCAACACCACCACCACCATCAGCAGCAGCAG
CAGCAGCAGCAGCAGGTCCAGGCCGTGCCACCCCCTCCGGTACAGCAGCA
ACAACAGCAGCAGCAGCATCAGCAGCAGCCCCACGCTGCTTTTTGGGAGA
TGATTGCAGCGGTCGGCAACAATCAGGGCCAGCCTTGA

Synonyms

Publications