jgi.p|Nanoce1779_2|275618, mRNA_9732 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|275618
Unique NamemRNA_9732
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1247
Alignment locationscaffold_37:41128..42374 +

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Properties
Property NameValue
TranscriptId275704
TrackFilteredModels2
ProteinId275618
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_37supercontigscaffold_37:41128..42374 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|275618gene_9732Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|275618mRNA_9732-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9732CDS_9732Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9732 ID=mRNA_9732|Name=jgi.p|Nanoce1779_2|275618|organism=Nannochloropsis oceanica|type=mRNA|length=1247bp
TTCCTCTTCTACTTTCATACCCAGCATATCATCAGGCACCGTTGAAATCG
GCCGCGGCCCCTGGGACAATCACGCAATAGCCCCTAGCTTGTTCAACCAC
TCCAGCCACATGTCCTTCTCCGTCTCGACCTGTCATTGTCCCTAGTAAAA
TCCAGTCCATCCCCAACATAACCACACCATGGTCGGCCTGCCCCTCCTCA
AGCTCGGGGGTCTGGCCATCAAGACCCTTGCGAAGCCCGTAGCCAAGCGG
ATGAAGGTCGAGGCTGCCGAGCGACCGGGCCTCAAGAGATTTTATGTTAC
CGTTGGCCAATGGACCCATCAAGCCTCCGCGTGGATCACCATCTCCTCCG
CGGGGCATAAATCCCTGGGCGTGAAGGAATTGGAAGAAGCCGCAGCGTTT
GCACGAGGGGCAGATTTCTTATCGGAGACTCTGGTGTTCTTCGTGGGTGG
TGCCATCTTGACGTTCGAATATACACGGTCCAACATGAGCGCGGCGAAAA
AAGAGGCAGCGAAGGAAGCAGGGCGCCAGAAATTCAGAGAAGATCTAGAG
GCACGGTTTTTGGTGCTGGAAGCAAGGGTAGATGCGATGGAAGAGCAGCA
ACAAGCAGGGTGGGCGAGGCTGTTTGCGGGCGGAGGGGGAGGGGGAAAGG
GAGGGAGGGAGGGAGGGAGGATTACCTTAGAGGACTTGCCACCGGCGCCC
CGGTTTGCGGATGTCGAGACATTGAAACAGAAGAAAAAGAGGCAGGCGGC
GGATGCAGCAGCAATGTCCGCGGTTGCAGCAGTAGCGGCAACCGAGATGA
AGGACAAGGAGATTGGAAAAAGCGGGGGGGGAGGGCAAAATTCATCTGTT
TCCTCCTCCTCCTCCTCCTCCTCCTCTTTTCCCCCCTCTTCTTTCTCACC
GATACCAAAAGGGAAGGTGCTGCAAAGTAGCATGGTGAATACGAGCGGCA
GTAGCGGTAGCCGTCCTCCCTCACACCATTCGTCTGAAGAGACGATGGTC
GACACGCCGAGGGAGGGGAAGGACGAGGAGGAAGGGAGAAAGGGAGGGGC
GGGAGGAGGGAGAAAGGATCGTCCATGGTGGTGGACCCGAGTGTGGAGGT
CTGTCCGAGGAGGAGGAGGAGGAGGGGGGAGGAGGAGGAGGAGGAGGAGA
AGAGGTAATGGTACCAACAGCAGGTGCAGCAGCTGAAGAAGTAAGGCAAG
AGGCCGCACTTAAGACCAACAACAGCAGCAGCAATATTGCCACCACT
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protein sequence of jgi.p|Nanoce1779_2|275618

>mRNA_9732-protein ID=mRNA_9732-protein|Name=jgi.p|Nanoce1779_2|275618|organism=Nannochloropsis oceanica|type=polypeptide|length=336bp
MVGLPLLKLGGLAIKTLAKPVAKRMKVEAAERPGLKRFYVTVGQWTHQAS
AWITISSAGHKSLGVKELEEAAAFARGADFLSETLVFFVGGAILTFEYTR
SNMSAAKKEAAKEAGRQKFREDLEARFLVLEARVDAMEEQQQAGWARLFA
GGGGGGKGGREGGRITLEDLPPAPRFADVETLKQKKKRQAADAAAMSAVA
AVAATEMKDKEIGKSGGGGQNSSVSSSSSSSSSFPPSSFSPIPKGKVLQS
SMVNTSGSSGSRPPSHHSSEETMVDTPREGKDEEEGRKGGAGGGRKDRPW
WWTRVWRSVRGGGGGGGRRRRRRRRGNGTNSRCSS*
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mRNA from alignment at scaffold_37:41128..42374+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9732 ID=mRNA_9732|Name=jgi.p|Nanoce1779_2|275618|organism=Nannochloropsis oceanica|type=mRNA|length=1247bp|location=Sequence derived from alignment at scaffold_37:41128..42374+ (Nannochloropsis oceanica)
TTCCTCTTCTACTTTCATACCCAGCATATCATCAGGCACCGTTGAAATCG
GCCGCGGCCCCTGGGACAATCACGCAATAGCCCCTAGCTTGTTCAACCAC
TCCAGCCACATGTCCTTCTCCGTCTCGACCTGTCATTGTCCCTAGTAAAA
TCCAGTCCATCCCCAACATAACCACACCATGGTCGGCCTGCCCCTCCTCA
AGCTCGGGGGTCTGGCCATCAAGACCCTTGCGAAGCCCGTAGCCAAGCGG
ATGAAGGTCGAGGCTGCCGAGCGACCGGGCCTCAAGAGATTTTATGTTAC
CGTTGGCCAATGGACCCATCAAGCCTCCGCGTGGATCACCATCTCCTCCG
CGGGGCATAAATCCCTGGGCGTGAAGGAATTGGAAGAAGCCGCAGCGTTT
GCACGAGGGGCAGATTTCTTATCGGAGACTCTGGTGTTCTTCGTGGGTGG
TGCCATCTTGACGTTCGAATATACACGGTCCAACATGAGCGCGGCGAAAA
AAGAGGCAGCGAAGGAAGCAGGGCGCCAGAAATTCAGAGAAGATCTAGAG
GCACGGTTTTTGGTGCTGGAAGCAAGGGTAGATGCGATGGAAGAGCAGCA
ACAAGCAGGGTGGGCGAGGCTGTTTGCGGGCGGAGGGGGAGGGGGAAAGG
GAGGGAGGGAGGGAGGGAGGATTACCTTAGAGGACTTGCCACCGGCGCCC
CGGTTTGCGGATGTCGAGACATTGAAACAGAAGAAAAAGAGGCAGGCGGC
GGATGCAGCAGCAATGTCCGCGGTTGCAGCAGTAGCGGCAACCGAGATGA
AGGACAAGGAGATTGGAAAAAGCGGGGGGGGAGGGCAAAATTCATCTGTT
TCCTCCTCCTCCTCCTCCTCCTCCTCTTTTCCCCCCTCTTCTTTCTCACC
GATACCAAAAGGGAAGGTGCTGCAAAGTAGCATGGTGAATACGAGCGGCA
GTAGCGGTAGCCGTCCTCCCTCACACCATTCGTCTGAAGAGACGATGGTC
GACACGCCGAGGGAGGGGAAGGACGAGGAGGAAGGGAGAAAGGGAGGGGC
GGGAGGAGGGAGAAAGGATCGTCCATGGTGGTGGACCCGAGTGTGGAGGT
CTGTCCGAGGAGGAGGAGGAGGAGGGGGGAGGAGGAGGAGGAGGAGGAGA
AGAGGTAATGGTACCAACAGCAGGTGCAGCAGCTGAAGAAGTAAGGCAAG
AGGCCGCACTTAAGACCAACAACAGCAGCAGCAATATTGCCACCACT
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Coding sequence (CDS) from alignment at scaffold_37:41128..42374+

>mRNA_9732 ID=mRNA_9732|Name=jgi.p|Nanoce1779_2|275618|organism=Nannochloropsis oceanica|type=CDS|length=1008bp|location=Sequence derived from alignment at scaffold_37:41128..42374+ (Nannochloropsis oceanica)
ATGGTCGGCCTGCCCCTCCTCAAGCTCGGGGGTCTGGCCATCAAGACCCT
TGCGAAGCCCGTAGCCAAGCGGATGAAGGTCGAGGCTGCCGAGCGACCGG
GCCTCAAGAGATTTTATGTTACCGTTGGCCAATGGACCCATCAAGCCTCC
GCGTGGATCACCATCTCCTCCGCGGGGCATAAATCCCTGGGCGTGAAGGA
ATTGGAAGAAGCCGCAGCGTTTGCACGAGGGGCAGATTTCTTATCGGAGA
CTCTGGTGTTCTTCGTGGGTGGTGCCATCTTGACGTTCGAATATACACGG
TCCAACATGAGCGCGGCGAAAAAAGAGGCAGCGAAGGAAGCAGGGCGCCA
GAAATTCAGAGAAGATCTAGAGGCACGGTTTTTGGTGCTGGAAGCAAGGG
TAGATGCGATGGAAGAGCAGCAACAAGCAGGGTGGGCGAGGCTGTTTGCG
GGCGGAGGGGGAGGGGGAAAGGGAGGGAGGGAGGGAGGGAGGATTACCTT
AGAGGACTTGCCACCGGCGCCCCGGTTTGCGGATGTCGAGACATTGAAAC
AGAAGAAAAAGAGGCAGGCGGCGGATGCAGCAGCAATGTCCGCGGTTGCA
GCAGTAGCGGCAACCGAGATGAAGGACAAGGAGATTGGAAAAAGCGGGGG
GGGAGGGCAAAATTCATCTGTTTCCTCCTCCTCCTCCTCCTCCTCCTCTT
TTCCCCCCTCTTCTTTCTCACCGATACCAAAAGGGAAGGTGCTGCAAAGT
AGCATGGTGAATACGAGCGGCAGTAGCGGTAGCCGTCCTCCCTCACACCA
TTCGTCTGAAGAGACGATGGTCGACACGCCGAGGGAGGGGAAGGACGAGG
AGGAAGGGAGAAAGGGAGGGGCGGGAGGAGGGAGAAAGGATCGTCCATGG
TGGTGGACCCGAGTGTGGAGGTCTGTCCGAGGAGGAGGAGGAGGAGGGGG
GAGGAGGAGGAGGAGGAGGAGAAGAGGTAATGGTACCAACAGCAGGTGCA
GCAGCTGA
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Synonyms
Publications