jgi.p|Nanoce1779_2|606948, mRNA_9731 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|606948
Unique NamemRNA_9731
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length896
Alignment locationscaffold_37:39397..40292 -

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Properties
Property NameValue
TranscriptId607034
TrackFilteredModels2
ProteinId606948
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_37supercontigscaffold_37:39397..40292 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|606948gene_9731Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|606948mRNA_9731-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9731CDS_9731Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9731 ID=mRNA_9731|Name=jgi.p|Nanoce1779_2|606948|organism=Nannochloropsis oceanica|type=mRNA|length=896bp
GGCGAGACTACTAGCTCAGGGTGTGTTGTTGGGGATCGAAACATGCACGT
TGCCCTGTACCGCTCATGCATTACATAAAAATTTATTCTACGACTAGATT
CAATAACTACGTTTCAGAAGTTGCGTGACTTGCAGCACCGGTAGAATAAT
CTGTTCAGCTCGGGAAGACGTATCCATGAATTGTCTGCAATATTTAAATA
CTTGATGTAATAGGGCTAGATACTTGACGCCGAGAGACAGTATATAAAGG
CGTTGATTGTGAAAAGTGTCTTGAAAAATGAGGAGTAGGATGAATCGTCA
AGTCAACGATGTTCCTGCATTGATCGCGATATGCGTAAGTACGTCCTCCA
GGGTGGGGAGGTTACTAACATGGCAAACTTTTTGTTGGGCCGATGAAATT
GTCCCCAGTCTTGCTGAGTGTCTTTCAAATAATGAGTTCAAACACATGTG
TGACAATGTGGTTGCAGACAAGGCTCTCGAGAAAAGACATAGCAAGCTCT
TTGTCCATCCCGAGTCTAGGAGTCGAGTCTTGGATCAACGTGATCCCAGC
ATCAGCCATGCCCACGTCCTGCACCACGATCGTGCCCTCCGCAATGTTGA
TTTTCGTGGCTTCATAGTGCAATACTGGTGCATTAGCTGCCAAACGGGTG
AAAGGCTACCTGCGACCGGCGCCCTCGACAGAGGAATACGGTCAATTCTT
ATTCTGGGGCTATTCCTCTTGCTCCTCATCGTCGTCATTGTCCGATCCCT
TGTCCTTATCCTCGTCTTAGCTCTTGTCATCGTCCTCGATGAAACTCCAG
TTCCCTAAAGAGTATACTTTGATCTTTAGTTACTACACCTTTTTTCTCTT
CCTGGAATGGAAGAGATCGGTGCGGACCGTTTTACTGCAAGAATGC
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protein sequence of jgi.p|Nanoce1779_2|606948

>mRNA_9731-protein ID=mRNA_9731-protein|Name=jgi.p|Nanoce1779_2|606948|organism=Nannochloropsis oceanica|type=polypeptide|length=177bp
MRSRMNRQVNDVPALIAICVSTSSRVGRLLTWQTFCWADEIVPSLAECLS
NNEFKHMCDNVVADKALEKRHSKLFVHPESRSRVLDQRDPSISHAHVLHH
DRALRNVDFRGFIVQYWCISCQTGERLPATGALDRGIRSILILGLFLLLL
IVVIVRSLVLILVLALVIVLDETPVP*
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mRNA from alignment at scaffold_37:39397..40292-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9731 ID=mRNA_9731|Name=jgi.p|Nanoce1779_2|606948|organism=Nannochloropsis oceanica|type=mRNA|length=896bp|location=Sequence derived from alignment at scaffold_37:39397..40292- (Nannochloropsis oceanica)
GGCGAGACTACTAGCTCAGGGTGTGTTGTTGGGGATCGAAACATGCACGT
TGCCCTGTACCGCTCATGCATTACATAAAAATTTATTCTACGACTAGATT
CAATAACTACGTTTCAGAAGTTGCGTGACTTGCAGCACCGGTAGAATAAT
CTGTTCAGCTCGGGAAGACGTATCCATGAATTGTCTGCAATATTTAAATA
CTTGATGTAATAGGGCTAGATACTTGACGCCGAGAGACAGTATATAAAGG
CGTTGATTGTGAAAAGTGTCTTGAAAAATGAGGAGTAGGATGAATCGTCA
AGTCAACGATGTTCCTGCATTGATCGCGATATGCGTAAGTACGTCCTCCA
GGGTGGGGAGGTTACTAACATGGCAAACTTTTTGTTGGGCCGATGAAATT
GTCCCCAGTCTTGCTGAGTGTCTTTCAAATAATGAGTTCAAACACATGTG
TGACAATGTGGTTGCAGACAAGGCTCTCGAGAAAAGACATAGCAAGCTCT
TTGTCCATCCCGAGTCTAGGAGTCGAGTCTTGGATCAACGTGATCCCAGC
ATCAGCCATGCCCACGTCCTGCACCACGATCGTGCCCTCCGCAATGTTGA
TTTTCGTGGCTTCATAGTGCAATACTGGTGCATTAGCTGCCAAACGGGTG
AAAGGCTACCTGCGACCGGCGCCCTCGACAGAGGAATACGGTCAATTCTT
ATTCTGGGGCTATTCCTCTTGCTCCTCATCGTCGTCATTGTCCGATCCCT
TGTCCTTATCCTCGTCTTAGCTCTTGTCATCGTCCTCGATGAAACTCCAG
TTCCCTAAAGAGTATACTTTGATCTTTAGTTACTACACCTTTTTTCTCTT
CCTGGAATGGAAGAGATCGGTGCGGACCGTTTTACTGCAAGAATGC
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Coding sequence (CDS) from alignment at scaffold_37:39397..40292-

>mRNA_9731 ID=mRNA_9731|Name=jgi.p|Nanoce1779_2|606948|organism=Nannochloropsis oceanica|type=CDS|length=531bp|location=Sequence derived from alignment at scaffold_37:39397..40292- (Nannochloropsis oceanica)
ATGAGGAGTAGGATGAATCGTCAAGTCAACGATGTTCCTGCATTGATCGC
GATATGCGTAAGTACGTCCTCCAGGGTGGGGAGGTTACTAACATGGCAAA
CTTTTTGTTGGGCCGATGAAATTGTCCCCAGTCTTGCTGAGTGTCTTTCA
AATAATGAGTTCAAACACATGTGTGACAATGTGGTTGCAGACAAGGCTCT
CGAGAAAAGACATAGCAAGCTCTTTGTCCATCCCGAGTCTAGGAGTCGAG
TCTTGGATCAACGTGATCCCAGCATCAGCCATGCCCACGTCCTGCACCAC
GATCGTGCCCTCCGCAATGTTGATTTTCGTGGCTTCATAGTGCAATACTG
GTGCATTAGCTGCCAAACGGGTGAAAGGCTACCTGCGACCGGCGCCCTCG
ACAGAGGAATACGGTCAATTCTTATTCTGGGGCTATTCCTCTTGCTCCTC
ATCGTCGTCATTGTCCGATCCCTTGTCCTTATCCTCGTCTTAGCTCTTGT
CATCGTCCTCGATGAAACTCCAGTTCCCTAA
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Synonyms
Publications