jgi.p|Nanoce1779_2|574836, mRNA_973 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|574836
Unique NamemRNA_973
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length873
Alignment locationscaffold_2:896390..897262 -

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Properties
Property NameValue
TranscriptId574922
TrackFilteredModels2
ProteinId574836
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:896390..897262 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|574836gene_973Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|574836mRNA_973-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_973CDS_973Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_973 ID=mRNA_973|Name=jgi.p|Nanoce1779_2|574836|organism=Nannochloropsis oceanica|type=mRNA|length=873bp
GCCTATTACTACATGCAGCAGCAACAACAACAAGCACTGCAGCAGCAGCA
GCAGCAGCAACAACAACAACAACAACGACATCATCAAGAACAGCAGCAAC
AACAACAGCTGCAACAACAACAACAACAACAACAGCAACAACATCAGCAG
CAGCAAGCTATGATGCAGGCACAGTTGCTAATGCTGCAGGCGCAGCAGCA
GCAGCAGATGCAGGAGGAACAACGGCACCAGTCCATCATCCATGCGGACA
ATGCGGCCGAAGGGTTGGGTGGTGGTGGAGACGTAGACAATGGGCAGCAG
CTTTCAGTGATTTCTCAGGATTTGCTTGATCGATTCGAGGCGTATTTGGG
GAACTATTTCCCCCAGCCGCAGATATGGGCGACTTTGCGTGACGTGGTGA
GCTTGACGCCCAATATCATGAAGGAGGCGGGGGAGCACATCTTTTTGCAA
GATCCGCACGCTGTCACAAGTTTTTTCGATCGGCATTATGCCCATCCTCT
GGTGGTGGCAAATGTGCAACAGATCAAACATTTCTACGACTTCTGTCGTG
CCTCCTCATGACAGTTACATGAAATTTAAAAAGGAAGAAGGAAGAGAATT
GATTCACACAAAGAGAGCGGAGAGGACGACCAGCAAGTGATACAGAGGCT
TCATGCTCTCGTTGCGTTGTGCAGCAGGCAAAGACAATAGCATGGTTATT
GGAGTCATGAGCTATTTGTCATGAGCAAGAAAATTTGTTCTATTGGTCAT
GCAAATGAATAAACCGCACCAAACAAGGCTAATATCATCGAAATAAAAAT
CAAGATTGAAACAAGGTTGATTGAAAGCAAGTAGAGTTGTAACATTGATT
ATTGCTCTGCAATTCGCCTTCCA
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protein sequence of jgi.p|Nanoce1779_2|574836

>mRNA_973-protein ID=mRNA_973-protein|Name=jgi.p|Nanoce1779_2|574836|organism=Nannochloropsis oceanica|type=polypeptide|length=183bp
MQQQQQQALQQQQQQQQQQQQRHHQEQQQQQQLQQQQQQQQQQHQQQQAM
MQAQLLMLQAQQQQQMQEEQRHQSIIHADNAAEGLGGGGDVDNGQQLSVI
SQDLLDRFEAYLGNYFPQPQIWATLRDVVSLTPNIMKEAGEHIFLQDPHA
VTSFFDRHYAHPLVVANVQQIKHFYDFCRASS*
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mRNA from alignment at scaffold_2:896390..897262-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_973 ID=mRNA_973|Name=jgi.p|Nanoce1779_2|574836|organism=Nannochloropsis oceanica|type=mRNA|length=873bp|location=Sequence derived from alignment at scaffold_2:896390..897262- (Nannochloropsis oceanica)
GCCTATTACTACATGCAGCAGCAACAACAACAAGCACTGCAGCAGCAGCA
GCAGCAGCAACAACAACAACAACAACGACATCATCAAGAACAGCAGCAAC
AACAACAGCTGCAACAACAACAACAACAACAACAGCAACAACATCAGCAG
CAGCAAGCTATGATGCAGGCACAGTTGCTAATGCTGCAGGCGCAGCAGCA
GCAGCAGATGCAGGAGGAACAACGGCACCAGTCCATCATCCATGCGGACA
ATGCGGCCGAAGGGTTGGGTGGTGGTGGAGACGTAGACAATGGGCAGCAG
CTTTCAGTGATTTCTCAGGATTTGCTTGATCGATTCGAGGCGTATTTGGG
GAACTATTTCCCCCAGCCGCAGATATGGGCGACTTTGCGTGACGTGGTGA
GCTTGACGCCCAATATCATGAAGGAGGCGGGGGAGCACATCTTTTTGCAA
GATCCGCACGCTGTCACAAGTTTTTTCGATCGGCATTATGCCCATCCTCT
GGTGGTGGCAAATGTGCAACAGATCAAACATTTCTACGACTTCTGTCGTG
CCTCCTCATGACAGTTACATGAAATTTAAAAAGGAAGAAGGAAGAGAATT
GATTCACACAAAGAGAGCGGAGAGGACGACCAGCAAGTGATACAGAGGCT
TCATGCTCTCGTTGCGTTGTGCAGCAGGCAAAGACAATAGCATGGTTATT
GGAGTCATGAGCTATTTGTCATGAGCAAGAAAATTTGTTCTATTGGTCAT
GCAAATGAATAAACCGCACCAAACAAGGCTAATATCATCGAAATAAAAAT
CAAGATTGAAACAAGGTTGATTGAAAGCAAGTAGAGTTGTAACATTGATT
ATTGCTCTGCAATTCGCCTTCCA
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Coding sequence (CDS) from alignment at scaffold_2:896390..897262-

>mRNA_973 ID=mRNA_973|Name=jgi.p|Nanoce1779_2|574836|organism=Nannochloropsis oceanica|type=CDS|length=549bp|location=Sequence derived from alignment at scaffold_2:896390..897262- (Nannochloropsis oceanica)
ATGCAGCAGCAACAACAACAAGCACTGCAGCAGCAGCAGCAGCAGCAACA
ACAACAACAACAACGACATCATCAAGAACAGCAGCAACAACAACAGCTGC
AACAACAACAACAACAACAACAGCAACAACATCAGCAGCAGCAAGCTATG
ATGCAGGCACAGTTGCTAATGCTGCAGGCGCAGCAGCAGCAGCAGATGCA
GGAGGAACAACGGCACCAGTCCATCATCCATGCGGACAATGCGGCCGAAG
GGTTGGGTGGTGGTGGAGACGTAGACAATGGGCAGCAGCTTTCAGTGATT
TCTCAGGATTTGCTTGATCGATTCGAGGCGTATTTGGGGAACTATTTCCC
CCAGCCGCAGATATGGGCGACTTTGCGTGACGTGGTGAGCTTGACGCCCA
ATATCATGAAGGAGGCGGGGGAGCACATCTTTTTGCAAGATCCGCACGCT
GTCACAAGTTTTTTCGATCGGCATTATGCCCATCCTCTGGTGGTGGCAAA
TGTGCAACAGATCAAACATTTCTACGACTTCTGTCGTGCCTCCTCATGA
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Synonyms
Publications