jgi.p|Nanoce1779_2|606941, mRNA_9729 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|606941
Unique NamemRNA_9729
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1174
Alignment locationscaffold_37:34631..35804 -

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Properties
Property NameValue
TranscriptId607027
TrackFilteredModels2
ProteinId606941
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_37supercontigscaffold_37:34631..35804 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|606941gene_9729Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|606941mRNA_9729-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9729CDS_9729Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9729 ID=mRNA_9729|Name=jgi.p|Nanoce1779_2|606941|organism=Nannochloropsis oceanica|type=mRNA|length=1174bp
ACAGCTTTCAAGCCTGATCAAGCACTTCCATACCAACCATCATGCGCTGT
TTTTTCGTTTTCACCACTCTCGTAGCCGCGACCAGCCATTTATCCCTCTT
TACGGCTGCGGACTCGCCTGCAAATGATGAGCAGCCCCTGGGAGGAGAGG
ACTTATCCTGGTACAATGGGGACAAGATTCTTCTGGGCGGAGAGAAGCCA
TCGGGGTACAACGGGCACAAGCAGCCGTCATATTATAATGAGCATAAGCA
GTACCAGGCCTTGGCGGGAGAGGACGAATTAGCCTGGTACCACGGGGACA
AGCAATACATGGGCGATAAGACATTATTCCGCGACCACCACGACGTGCCA
AAGTACGATAACGACAAGTACTACCACGAGCCCAAACACGCCTCCAAGTA
CGATGACGACAAGTACTACCACGAGCCCAAGCATGTCTCCAAGTACGACG
ATGACAAGTACTACCACGAGCCCAAGCATGTCTCCAAGTACGATGACGAC
AAGTACTACCACGAGCCCAAGCCTGTCTCCAAGTACGACGATGACAAGTA
CTATAAGGAGGCCAAGTACGTCTCCAAGTACGATGATGACAAGAATTACG
ACTATAAGCCCCAGACCATCTCCAAGTACGATGACAACAAGTACTACGAC
GATGAGCCCGAGCAAGGCTCCGAGTATGACCACGAAGAACACTACTACAA
GCCCATGCCTAATTCCAAGGGCAAAGGTAAGGTAGACAAGGGCCAAGGCA
AGGGAGGCTGGATGCAGAAGGGTCAGCCTAAAAAGAATCTGCGCAAGGGA
GGTTATAACAAGCTTTAAAGCAGCGAGGGAGACTATGATAACCTTTAAAG
TAGCAAACCATCATTTAGAGATGAAACAGGGTGGATGGGGTGATATATAT
ATAGAGGGTGATAAAGGCAAAATAGGAAGATAGCATTACACGGAACTTGA
CACTTTCATTCAAGCGAGGAACGACCGCGAGGAAAATGAAGTAAAGGGAC
CATTCTCTTTCACGCTTTTCCTGTCCTCCCATTTTGATTTTTGGGGGCCG
CTACTCGCCTTCACACCTGACATACAGTTTGGTGTAGATAAGAGAGGAAT
TAGGACAAGGGGGATTTCAAAGCGTATATACAACCGAAATTTAAGGAAGT
CTGCAAAATCAAAAAGAATAACTA
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protein sequence of jgi.p|Nanoce1779_2|606941

>mRNA_9729-protein ID=mRNA_9729-protein|Name=jgi.p|Nanoce1779_2|606941|organism=Nannochloropsis oceanica|type=polypeptide|length=259bp
MRCFFVFTTLVAATSHLSLFTAADSPANDEQPLGGEDLSWYNGDKILLGG
EKPSGYNGHKQPSYYNEHKQYQALAGEDELAWYHGDKQYMGDKTLFRDHH
DVPKYDNDKYYHEPKHASKYDDDKYYHEPKHVSKYDDDKYYHEPKHVSKY
DDDKYYHEPKPVSKYDDDKYYKEAKYVSKYDDDKNYDYKPQTISKYDDNK
YYDDEPEQGSEYDHEEHYYKPMPNSKGKGKVDKGQGKGGWMQKGQPKKNL
RKGGYNKL*
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mRNA from alignment at scaffold_37:34631..35804-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9729 ID=mRNA_9729|Name=jgi.p|Nanoce1779_2|606941|organism=Nannochloropsis oceanica|type=mRNA|length=1174bp|location=Sequence derived from alignment at scaffold_37:34631..35804- (Nannochloropsis oceanica)
ACAGCTTTCAAGCCTGATCAAGCACTTCCATACCAACCATCATGCGCTGT
TTTTTCGTTTTCACCACTCTCGTAGCCGCGACCAGCCATTTATCCCTCTT
TACGGCTGCGGACTCGCCTGCAAATGATGAGCAGCCCCTGGGAGGAGAGG
ACTTATCCTGGTACAATGGGGACAAGATTCTTCTGGGCGGAGAGAAGCCA
TCGGGGTACAACGGGCACAAGCAGCCGTCATATTATAATGAGCATAAGCA
GTACCAGGCCTTGGCGGGAGAGGACGAATTAGCCTGGTACCACGGGGACA
AGCAATACATGGGCGATAAGACATTATTCCGCGACCACCACGACGTGCCA
AAGTACGATAACGACAAGTACTACCACGAGCCCAAACACGCCTCCAAGTA
CGATGACGACAAGTACTACCACGAGCCCAAGCATGTCTCCAAGTACGACG
ATGACAAGTACTACCACGAGCCCAAGCATGTCTCCAAGTACGATGACGAC
AAGTACTACCACGAGCCCAAGCCTGTCTCCAAGTACGACGATGACAAGTA
CTATAAGGAGGCCAAGTACGTCTCCAAGTACGATGATGACAAGAATTACG
ACTATAAGCCCCAGACCATCTCCAAGTACGATGACAACAAGTACTACGAC
GATGAGCCCGAGCAAGGCTCCGAGTATGACCACGAAGAACACTACTACAA
GCCCATGCCTAATTCCAAGGGCAAAGGTAAGGTAGACAAGGGCCAAGGCA
AGGGAGGCTGGATGCAGAAGGGTCAGCCTAAAAAGAATCTGCGCAAGGGA
GGTTATAACAAGCTTTAAAGCAGCGAGGGAGACTATGATAACCTTTAAAG
TAGCAAACCATCATTTAGAGATGAAACAGGGTGGATGGGGTGATATATAT
ATAGAGGGTGATAAAGGCAAAATAGGAAGATAGCATTACACGGAACTTGA
CACTTTCATTCAAGCGAGGAACGACCGCGAGGAAAATGAAGTAAAGGGAC
CATTCTCTTTCACGCTTTTCCTGTCCTCCCATTTTGATTTTTGGGGGCCG
CTACTCGCCTTCACACCTGACATACAGTTTGGTGTAGATAAGAGAGGAAT
TAGGACAAGGGGGATTTCAAAGCGTATATACAACCGAAATTTAAGGAAGT
CTGCAAAATCAAAAAGAATAACTA
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Coding sequence (CDS) from alignment at scaffold_37:34631..35804-

>mRNA_9729 ID=mRNA_9729|Name=jgi.p|Nanoce1779_2|606941|organism=Nannochloropsis oceanica|type=CDS|length=777bp|location=Sequence derived from alignment at scaffold_37:34631..35804- (Nannochloropsis oceanica)
ATGCGCTGTTTTTTCGTTTTCACCACTCTCGTAGCCGCGACCAGCCATTT
ATCCCTCTTTACGGCTGCGGACTCGCCTGCAAATGATGAGCAGCCCCTGG
GAGGAGAGGACTTATCCTGGTACAATGGGGACAAGATTCTTCTGGGCGGA
GAGAAGCCATCGGGGTACAACGGGCACAAGCAGCCGTCATATTATAATGA
GCATAAGCAGTACCAGGCCTTGGCGGGAGAGGACGAATTAGCCTGGTACC
ACGGGGACAAGCAATACATGGGCGATAAGACATTATTCCGCGACCACCAC
GACGTGCCAAAGTACGATAACGACAAGTACTACCACGAGCCCAAACACGC
CTCCAAGTACGATGACGACAAGTACTACCACGAGCCCAAGCATGTCTCCA
AGTACGACGATGACAAGTACTACCACGAGCCCAAGCATGTCTCCAAGTAC
GATGACGACAAGTACTACCACGAGCCCAAGCCTGTCTCCAAGTACGACGA
TGACAAGTACTATAAGGAGGCCAAGTACGTCTCCAAGTACGATGATGACA
AGAATTACGACTATAAGCCCCAGACCATCTCCAAGTACGATGACAACAAG
TACTACGACGATGAGCCCGAGCAAGGCTCCGAGTATGACCACGAAGAACA
CTACTACAAGCCCATGCCTAATTCCAAGGGCAAAGGTAAGGTAGACAAGG
GCCAAGGCAAGGGAGGCTGGATGCAGAAGGGTCAGCCTAAAAAGAATCTG
CGCAAGGGAGGTTATAACAAGCTTTAA
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Synonyms
Publications