jgi.p|Nanoce1779_2|606939, mRNA_9728 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|606939
Unique NamemRNA_9728
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length596
Alignment locationscaffold_37:34035..34630 -

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Properties
Property NameValue
TranscriptId607025
TrackFilteredModels2
ProteinId606939
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_37supercontigscaffold_37:34035..34630 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|606939gene_9728Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|606939mRNA_9728-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9728CDS_9728Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9728 ID=mRNA_9728|Name=jgi.p|Nanoce1779_2|606939|organism=Nannochloropsis oceanica|type=mRNA|length=596bp
CGATGTCTCTTTTTAAGTGTCACGCCTCAAATGGCAATCAAACTTATTCG
TTTTCTGTTCGTCGTTTTTTTCCTGTCTTGGCTAACTGATTCCTTGTCGC
GTAATCTCTCGCCATCTTGTCTCATTGCTGTTACATACATCAAAATCTTT
CTTCTCCTCATTTCTACTACCTCCTTCCATTTTCATCAAAGTCTGCCGCT
TGAAGAATCTGTTTTTCCAACCAGTCACCCTCAGCAAATACTCCGTATCG
ACGTTCTTCCCTCTGCCCATGCTGCGGTTGTTGCTGCATGCGTGGCGCTC
TAGTTACTCGTCGCTCCCAACAAAAATTCCTCATCGTCGTCCTCGTCCCC
TTGTCCATGCTGATGATGGCGATGGTAATGGTGTTGGTGGTGGTGCTGCC
CCCTCCTCCTCACCCCCTGACTTTGCTGCGGCTGCGGATCATCCCCCCCG
CCCTGCGTCCCTCCCCCCGTCAACGTCACACTCTGACTTGACGACATGGG
CACAACTGTAGGACTCCCAGAGATGGTCTGCAGCTCTTCTCTCCCTCCTC
CTCCAGCTACTCCTCCCCCTCCCTCCCCCCCCCCCCTCCACCTGCC
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protein sequence of jgi.p|Nanoce1779_2|606939

>mRNA_9728-protein ID=mRNA_9728-protein|Name=jgi.p|Nanoce1779_2|606939|organism=Nannochloropsis oceanica|type=polypeptide|length=91bp
MAIKLIRFLFVVFFLSWLTDSLSRNLSPSCLIAVTYIKIFLLLISTTSFH
FHQSLPLEESVFPTSHPQQILRIDVLPSAHAAVVAACVAL*
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mRNA from alignment at scaffold_37:34035..34630-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9728 ID=mRNA_9728|Name=jgi.p|Nanoce1779_2|606939|organism=Nannochloropsis oceanica|type=mRNA|length=596bp|location=Sequence derived from alignment at scaffold_37:34035..34630- (Nannochloropsis oceanica)
CGATGTCTCTTTTTAAGTGTCACGCCTCAAATGGCAATCAAACTTATTCG
TTTTCTGTTCGTCGTTTTTTTCCTGTCTTGGCTAACTGATTCCTTGTCGC
GTAATCTCTCGCCATCTTGTCTCATTGCTGTTACATACATCAAAATCTTT
CTTCTCCTCATTTCTACTACCTCCTTCCATTTTCATCAAAGTCTGCCGCT
TGAAGAATCTGTTTTTCCAACCAGTCACCCTCAGCAAATACTCCGTATCG
ACGTTCTTCCCTCTGCCCATGCTGCGGTTGTTGCTGCATGCGTGGCGCTC
TAGTTACTCGTCGCTCCCAACAAAAATTCCTCATCGTCGTCCTCGTCCCC
TTGTCCATGCTGATGATGGCGATGGTAATGGTGTTGGTGGTGGTGCTGCC
CCCTCCTCCTCACCCCCTGACTTTGCTGCGGCTGCGGATCATCCCCCCCG
CCCTGCGTCCCTCCCCCCGTCAACGTCACACTCTGACTTGACGACATGGG
CACAACTGTAGGACTCCCAGAGATGGTCTGCAGCTCTTCTCTCCCTCCTC
CTCCAGCTACTCCTCCCCCTCCCTCCCCCCCCCCCCTCCACCTGCC
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Coding sequence (CDS) from alignment at scaffold_37:34035..34630-

>mRNA_9728 ID=mRNA_9728|Name=jgi.p|Nanoce1779_2|606939|organism=Nannochloropsis oceanica|type=CDS|length=273bp|location=Sequence derived from alignment at scaffold_37:34035..34630- (Nannochloropsis oceanica)
ATGGCAATCAAACTTATTCGTTTTCTGTTCGTCGTTTTTTTCCTGTCTTG
GCTAACTGATTCCTTGTCGCGTAATCTCTCGCCATCTTGTCTCATTGCTG
TTACATACATCAAAATCTTTCTTCTCCTCATTTCTACTACCTCCTTCCAT
TTTCATCAAAGTCTGCCGCTTGAAGAATCTGTTTTTCCAACCAGTCACCC
TCAGCAAATACTCCGTATCGACGTTCTTCCCTCTGCCCATGCTGCGGTTG
TTGCTGCATGCGTGGCGCTCTAG
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Synonyms
Publications