jgi.p|Nanoce1779_2|275603, mRNA_9727 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|275603
Unique Name	mRNA_9727
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1752
Alignment location	scaffold_37:32085..34276 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	275689
Track	FilteredModels2
ProteinId	275603

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_37	supercontig	scaffold_37:32085..34276 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|275603	gene_9727	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|275603	mRNA_9727-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_9727	CDS_9727	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_37:32085..34276+
coding sequence from alignment at scaffold_37:32085..34276+

mRNA sequence

>mRNA_9727 ID=mRNA_9727|Name=jgi.p|Nanoce1779_2|275603|organism=Nannochloropsis oceanica|type=mRNA|length=1752bp
CAGGAAGCAGGGGACAAAAGAAGACTGGCCAACAACGCACCAGGCCTCGG
CCTCTCGTCCTCATCCTCCCTCTCGCCTTCCATCCCTACCTACCCCCCCC
CGCCGGTCAACCCCCCTCCCCCTCCGCCACCTCCGTCGTTCGCATCGGCC
TTACCTGGGTTTAGCATGCTGCGGCTTTTGGACGTCGGGTTGGAAATTGG
TCGGGGGTTAGGATTTGTGCGCTCCACGTCTTTTGTGGAGGAAATGGAGA
CTCTGGTCTTCCGGTACACTTCCTCCCTCCTGGCCACCGCCCTGAAGCTG
CTTCAGTACCTCTTCCTCGGCCTCGCTCTTCTGACCTCCGCCACCGCTAT
CTATGCAGTTGCGTACCAACTGATCATGCCTACCAAATTACACGAAAAAG
AGCTGTTTTTTGACTATTTCCCACCTGCTGTCAGCGCTGTTGGTACCGTT
GAATATGGCAGAGGAGGGCCAGGTGGCTGGCCAGGGCCTTACCCTGCTGC
GGCGGCGGCGGCGACGGCAGCGGCAAGTGCCGACGCCACTGGTGCTGGTG
CTGGCTATGGTAGCTCCTTCAATTCGCCTGAGAAGGCGAATGCGGCCGCC
GCTCATTCGGTTACGATGATTACGGGGGAAAACCCTCCATCCCCTTCTGC
GCCTCCTCCCCCTCAAGACGCCGTCGACTCCTCCTCCCCCTCCTCCTCTC
CCTCCACACCCTCCTCTCCACCCTCCAACACCTGCGCTTCCCCCACTCCT
CCGTTCTTTCCTCCCTCCTACCATCACCCCTTCCCCCACGCCACTGTCGA
CTTCCTCTCCAAGCACAACCAATGGCATGCCTCCCCCCTCACCAAAACCG
ATACTCCCCTCGACCGTATCCTCCGCCCGGACCGTGTATACGTCATTGAC
ATCGAGATGACCCTTCCTGATTCGGAGCCCAACGCTTTTCTCGGGAATTT
TATGGTCTCGGTCGATTTATTTACGCGGGGAAATGAGCTTCTGGCCCGGT
CGGCTCGGCCTTTGATTCTCCTGTACAGGTCCCATTGGGTGCGGATAATA
CGGTCTTTCTTCCTGGCGCCTTTTTGGGCCTTGGGCCTGTCGCAGGAAGC
GCAGGTGGTCCGGGTTACCCTCTTCGATCGCTTCCGAGAGTCAGGTGCTC
ATCCCATGGCCTGGGCGCGGGTCACACTCTCGTCCCCTCAAGTGCATGTG
TACAAGGCGACATTGTCCATCACTGCCCAATTGAATTGGCTGCAATTTGT
CATGTCGTATTATTTTTATTCGACTGCGTTTTGCGCGATTCTTTTGCTCG
CAACCATGCTTGCAGCGGTGGTGGGCTTTGTCTACGTGTGGACCGAACTG
GAGGGGGAGGAGGAGGAGGCTCGGCAGGGAGGGAGGGAGGACGAAGAGGA
GGATGCTTGGGGGAATGGAGGGGGTTTGATGGCGGGAGGAAGTGGTAGAA
GAGGAGGAGGGAGGGGAAGAGGAAGAGAGGGAGGCGGCTTTGGTGCGGGA
AGTCATCACTACCAGCAGCAGAACGCGGCGAACGATGAGACGGAGACTAG
CTGGAGGAGGAGGGAGAGAAGAGCTGCAGACCATCTCTGGGAGTCCTACA
GTTGTGCCCATGTCGTCAAGTCAGAGTGTGACGTTGACGGGGGGAGGGAC
GCAGGGCGGGGGGGATGATCCGCAGCCGCAGCAAAGTCAGGGGGTGAGGA
GGAGGGGGCAGCACCACCACCAACACCATTACCATCGCCATCATCAGCAT
GG

protein sequence of jgi.p|Nanoce1779_2|275603

>mRNA_9727-protein ID=mRNA_9727-protein|Name=jgi.p|Nanoce1779_2|275603|organism=Nannochloropsis oceanica|type=polypeptide|length=501bp
MLRLLDVGLEIGRGLGFVRSTSFVEEMETLVFRYTSSLLATALKLLQYLF
LGLALLTSATAIYAVAYQLIMPTKLHEKELFFDYFPPAVSAVGTVEYGRG
GPGGWPGPYPAAAAAATAAASADATGAGAGYGSSFNSPEKANAAAAHSVT
MITGENPPSPSAPPPPQDAVDSSSPSSSPSTPSSPPSNTCASPTPPFFPP
SYHHPFPHATVDFLSKHNQWHASPLTKTDTPLDRILRPDRVYVIDIEMTL
PDSEPNAFLGNFMVSVDLFTRGNELLARSARPLILLYRSHWVRIIRSFFL
APFWALGLSQEAQVVRVTLFDRFRESGAHPMAWARVTLSSPQVHVYKATL
SITAQLNWLQFVMSYYFYSTAFCAILLLATMLAAVVGFVYVWTELEGEEE
EARQGGREDEEEDAWGNGGGLMAGGSGRRGGGRGRGREGGGFGAGSHHYQ
QQNAANDETETSWRRRERRAADHLWESYSCAHVVKSECDVDGGRDAGRGG
*

mRNA from alignment at scaffold_37:32085..34276+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9727 ID=mRNA_9727|Name=jgi.p|Nanoce1779_2|275603|organism=Nannochloropsis oceanica|type=mRNA|length=2192bp|location=Sequence derived from alignment at scaffold_37:32085..34276+ (Nannochloropsis oceanica)
CAGGAAGCAGGGGACAAAAGAAGACTGGCCAACAACGCACCAGGCCTCGG
CCTCTCGTCCTCATCCTCCCTCTCGCCTTCCATCCCTACCTACCCCCCCC
CGCCGGTCAACCCCCCTCCCCCTCCGCCACCTCCGTCGTTCGCATCGGCC
TTACCTGGGTTTAGCATGCTGCGGCTTTTGGACGTCGGGTTGGAAATTGG
TCGGGGGTTAGGATTTGTGCGCTCCACGTCTTTTGTGGAGGTAAGGGGGA
AAGGGGGGATAGGCTAGATAGGGGAGGAGGGAGGATGGAGAGAAGTATGA
AGAAAGGTCGGACGCGTGATTATTTTATGCGGAGCGACGTTGGCTCATGA
TTAAATGTGAGACTGAAGGGGGGTCTCATGCGAGCATGAGCAACAGCAAG
CTGCCTTGCAAATCATTTTCCGTATTCCCTCCTTCCCTTTCCTCTCCTCC
CTCCCAGGAAATGGAGACTCTGGTCTTCCGGTACACTTCCTCCCTCCTGG
CCACCGCCCTGAAGCTGCTTCAGTACCTCTTCCTCGGCCTCGCTCTTCTG
ACCTCCGCCACCGCTATCTATGCAGTTGCGTACCAACTGATCATGCCTAC
CAAATTACACGAAAAAGAGCTGTTTTTTGACTATTTCCCACCTGCTGTCA
GCGCTGTTGGTACCGTTGAATATGGCAGAGGAGGGCCAGGTGGCTGGCCA
GGGCCTTACCCTGCTGCGGCGGCGGCGGCGACGGCAGCGGCAAGTGCCGA
CGCCACTGGTGCTGGTGCTGGCTATGGTAGCTCCTTCAATTCGCCTGAGA
AGGCGAATGCGGCCGCCGCTCATTCGGTTACGATGATTACGGGGGAAAAC
CCTCCATCCCCTTCTGCGCCTCCTCCCCCTCAAGACGCCGTCGACTCCTC
CTCCCCCTCCTCCTCTCCCTCCACACCCTCCTCTCCACCCTCCAACACCT
GCGCTTCCCCCACTCCTCCGTTCTTTCCTCCCTCCTACCATCACCCCTTC
CCCCACGCCACTGTCGACTTCCTCTCCAAGCACAACCAATGGCATGCCTC
CCCCCTCACCAAAACCGATACTCCCCTCGACCGTATCCTCCGCCCGGACC
GTGTATACGTCATTGACATCGAGATGACCCTTCCTGATTCGGAGCCCAAC
GCTTTTCTCGGGAATTTTATGGTCTCGGTCGATTTATTTACGCGGGGAAA
TGAGCTTCTGGCCCGGTCGGCTCGGCCTTTGATTCTCCTGTACAGGTCCC
ATTGGGTGCGGATAATACGGTCTTTCTTCCTGGCGCCTTTTTGGGCCTTG
GGCCTGTCGCAGGAAGCGCAGGTGGTCCGGGTTACCCTCTTCGATCGCTT
CCGAGAGTCAGGTGCTCATCCCATGGCCTGGGCGCGGGTCACACTCTCGT
CCCCTCAAGTGCATGTGTACAAGGCGACATTGTCCATCACTGCCCAATTG
AATTGGCTGCAATTTGTCATGTCGTATTATTTTTATTCGACTGCGTTTTG
CGCGATTCTTTTGCTCGCAACCATGCTTGCAGCGGTGGTGGGCTTTGTCT
ACGTGTGGACCGAACTGGAGGGGGAGGAGGAGGAGGCTCGGCAGGGAGGG
AGGGAGGACGAAGAGGAGGATGCTTGGGGGAATGGAGGGGGTTTGATGGC
GGGAGGAAGTGGTAGAAGAGGAGGAGGGAGGGGAAGAGGAAGAGAGGGAG
GCGGCTTTGGTGCGGGAAGTCATCACTACCAGCAGCAGAACGCGGCGAAC
GATGAGACGGAGACGTTGTTAGGGGCGGAAGGAGGGAGGGAGGGAGAGAT
GGACCGGGGGGAGGGGGAGAGCGATGGTACAGGTAGCAGAGGGAGGAGAT
GGGGGAGGCAGGGAAGAAGGGGAGGGGGGAAGAGGAGGAGACTTGTCGTC
GCCGGCGTCAATGACCACTAGGAGTGTGTTTTTGGTCGATGATGATGGAG
GGCAGGTGGAGGGGGGGGGGGGAGGGAGGGGGAGGAGTAGCTGGAGGAGG
AGGGAGAGAAGAGCTGCAGACCATCTCTGGGAGTCCTACAGTTGTGCCCA
TGTCGTCAAGTCAGAGTGTGACGTTGACGGGGGGAGGGACGCAGGGCGGG
GGGGATGATCCGCAGCCGCAGCAAAGTCAGGGGGTGAGGAGGAGGGGGCA
GCACCACCACCAACACCATTACCATCGCCATCATCAGCATGG

Coding sequence (CDS) from alignment at scaffold_37:32085..34276+

>mRNA_9727 ID=mRNA_9727|Name=jgi.p|Nanoce1779_2|275603|organism=Nannochloropsis oceanica|type=CDS|length=4509bp|location=Sequence derived from alignment at scaffold_37:32085..34276+ (Nannochloropsis oceanica)
ATGCTGCGGCTTTTGGACGTCGGGTTGGAAATTGGTCGGGGGTTAGGATT
TGTGCGCTCCACGTCTTTTGTGGAGGAAATGGAGACTCTGGTCTTCCGGT
ACACTTCCTCCCTCCTGGCCACCGCCCTGAAGCTGCTTCAGTACCTCTTC
CTCGGCCTCGCTCTTCTGACCTCCGCCACCGCTATCTATGCAGTTGCGTA
CCAACTGATCATGCCTACCAAATTACACGAAAAAGAGCTGTTTTTTGACT
ATTTCCCACCTGCTGTCAGCGCTGTTGGTACCGTTGAATATGGCAGAGGA
GGGCCAGGTGGCTGGCCAGGGCCTTACCCTGCTGCGGCGGCGGCGGCGAC
GGCAGCGGCAAGTGCCGACGCCACTGGTGCTGGTGCTGGCTATGGTAGCT
CCTTCAATTCGCCTGAGAAGGCGAATGCGGCCGCCGCTCATTCGGTTACG
ATGATTACGGGGGAAAACCCTCCATCCCCTTCTGCGCCTCCTCCCCCTCA
AGACGCCGTCGACTCCTCCTCCCCCTCCTCCTCTCCCTCCACACCCTCCT
CTCCACCCTCCAACACCTGCGCTTCCCCCACTCCTCCGTTCTTTCCTCCC
TCCTACCATCACCCCTTCCCCCACGCCACTGTCGACTTCCTCTCCAAGCA
CAACCAATGGCATGCCTCCCCCCTCACCAAAACCGATACTCCCCTCGACC
GTATCCTCCGCCCGGACCGTGTATACGTCATTGACATCGAGATGACCCTT
CCTGATTCGGAGCCCAACGCTTTTCTCGGGAATTTTATGGTCTCGGTCGA
TTTATTTACGCGGGGAAATGAGCTTCTGGCCCGGTCGGCTCGGCCTTTGA
TTCTCCTGTACAGGTCCCATTGGGTGCGGATAATACGGTCTTTCTTCCTG
GCGCCTTTTTGGGCCTTGGGCCTGTCGCAGGAAGCGCAGGTGGTCCGGGT
TACCCTCTTCGATCGCTTCCGAGAGTCAGGTGCTCATCCCATGGCCTGGG
CGCGGGTCACACTCTCGTCCCCTCAAGTGCATGTGTACAAGGCGACATTG
TCCATCACTGCCCAATTGAATTGGCTGCAATTTGTCATGTCGTATTATTT
TTATTCGACTGCGTTTTGCGCGATTCTTTTGCTCGCAACCATGCTTGCAG
CGGTGGTGGGCTTTGTCTACGTGTGGACCGAACTGGAGGGGGAGGAGGAG
GAGGCTCGGCAGGGAGGGAGGGAGGACGAAGAGGAGGATGCTTGGGGGAA
TGGAGGGGGTTTGATGGCGGGAGGAAGTGGTAGAAGAGGAGGAGGGAGGG
GAAGAGGAAGAGAGGGAGGCGGCTTTGGTGCGGGAAGTCATCACTACCAG
CAGCAGAACGCGGCGAACGATGAGACGGAGACTAGCTGGAGGAGGAGGGA
GAGAAGAGCTGCAGACCATCTCTGGGAGTCCTACAGTTGTGCCCATGTCG
TCAAGTCAGAGTGTGACGTTGACGGGGGGAGGGACGCAGGGCGGGGGGGA
TGAATGCTGCGGCTTTTGGACGTCGGGTTGGAAATTGGTCGGGGGTTAGG
ATTTGTGCGCTCCACGTCTTTTGTGGAGGAAATGGAGACTCTGGTCTTCC
GGTACACTTCCTCCCTCCTGGCCACCGCCCTGAAGCTGCTTCAGTACCTC
TTCCTCGGCCTCGCTCTTCTGACCTCCGCCACCGCTATCTATGCAGTTGC
GTACCAACTGATCATGCCTACCAAATTACACGAAAAAGAGCTGTTTTTTG
ACTATTTCCCACCTGCTGTCAGCGCTGTTGGTACCGTTGAATATGGCAGA
GGAGGGCCAGGTGGCTGGCCAGGGCCTTACCCTGCTGCGGCGGCGGCGGC
GACGGCAGCGGCAAGTGCCGACGCCACTGGTGCTGGTGCTGGCTATGGTA
GCTCCTTCAATTCGCCTGAGAAGGCGAATGCGGCCGCCGCTCATTCGGTT
ACGATGATTACGGGGGAAAACCCTCCATCCCCTTCTGCGCCTCCTCCCCC
TCAAGACGCCGTCGACTCCTCCTCCCCCTCCTCCTCTCCCTCCACACCCT
CCTCTCCACCCTCCAACACCTGCGCTTCCCCCACTCCTCCGTTCTTTCCT
CCCTCCTACCATCACCCCTTCCCCCACGCCACTGTCGACTTCCTCTCCAA
GCACAACCAATGGCATGCCTCCCCCCTCACCAAAACCGATACTCCCCTCG
ACCGTATCCTCCGCCCGGACCGTGTATACGTCATTGACATCGAGATGACC
CTTCCTGATTCGGAGCCCAACGCTTTTCTCGGGAATTTTATGGTCTCGGT
CGATTTATTTACGCGGGGAAATGAGCTTCTGGCCCGGTCGGCTCGGCCTT
TGATTCTCCTGTACAGGTCCCATTGGGTGCGGATAATACGGTCTTTCTTC
CTGGCGCCTTTTTGGGCCTTGGGCCTGTCGCAGGAAGCGCAGGTGGTCCG
GGTTACCCTCTTCGATCGCTTCCGAGAGTCAGGTGCTCATCCCATGGCCT
GGGCGCGGGTCACACTCTCGTCCCCTCAAGTGCATGTGTACAAGGCGACA
TTGTCCATCACTGCCCAATTGAATTGGCTGCAATTTGTCATGTCGTATTA
TTTTTATTCGACTGCGTTTTGCGCGATTCTTTTGCTCGCAACCATGCTTG
CAGCGGTGGTGGGCTTTGTCTACGTGTGGACCGAACTGGAGGGGGAGGAG
GAGGAGGCTCGGCAGGGAGGGAGGGAGGACGAAGAGGAGGATGCTTGGGG
GAATGGAGGGGGTTTGATGGCGGGAGGAAGTGGTAGAAGAGGAGGAGGGA
GGGGAAGAGGAAGAGAGGGAGGCGGCTTTGGTGCGGGAAGTCATCACTAC
CAGCAGCAGAACGCGGCGAACGATGAGACGGAGACTAGCTGGAGGAGGAG
GGAGAGAAGAGCTGCAGACCATCTCTGGGAGTCCTACAGTTGTGCCCATG
TCGTCAAGTCAGAGTGTGACGTTGACGGGGGGAGGGACGCAGGGCGGGGG
GGATGAATGCTGCGGCTTTTGGACGTCGGGTTGGAAATTGGTCGGGGGTT
AGGATTTGTGCGCTCCACGTCTTTTGTGGAGGAAATGGAGACTCTGGTCT
TCCGGTACACTTCCTCCCTCCTGGCCACCGCCCTGAAGCTGCTTCAGTAC
CTCTTCCTCGGCCTCGCTCTTCTGACCTCCGCCACCGCTATCTATGCAGT
TGCGTACCAACTGATCATGCCTACCAAATTACACGAAAAAGAGCTGTTTT
TTGACTATTTCCCACCTGCTGTCAGCGCTGTTGGTACCGTTGAATATGGC
AGAGGAGGGCCAGGTGGCTGGCCAGGGCCTTACCCTGCTGCGGCGGCGGC
GGCGACGGCAGCGGCAAGTGCCGACGCCACTGGTGCTGGTGCTGGCTATG
GTAGCTCCTTCAATTCGCCTGAGAAGGCGAATGCGGCCGCCGCTCATTCG
GTTACGATGATTACGGGGGAAAACCCTCCATCCCCTTCTGCGCCTCCTCC
CCCTCAAGACGCCGTCGACTCCTCCTCCCCCTCCTCCTCTCCCTCCACAC
CCTCCTCTCCACCCTCCAACACCTGCGCTTCCCCCACTCCTCCGTTCTTT
CCTCCCTCCTACCATCACCCCTTCCCCCACGCCACTGTCGACTTCCTCTC
CAAGCACAACCAATGGCATGCCTCCCCCCTCACCAAAACCGATACTCCCC
TCGACCGTATCCTCCGCCCGGACCGTGTATACGTCATTGACATCGAGATG
ACCCTTCCTGATTCGGAGCCCAACGCTTTTCTCGGGAATTTTATGGTCTC
GGTCGATTTATTTACGCGGGGAAATGAGCTTCTGGCCCGGTCGGCTCGGC
CTTTGATTCTCCTGTACAGGTCCCATTGGGTGCGGATAATACGGTCTTTC
TTCCTGGCGCCTTTTTGGGCCTTGGGCCTGTCGCAGGAAGCGCAGGTGGT
CCGGGTTACCCTCTTCGATCGCTTCCGAGAGTCAGGTGCTCATCCCATGG
CCTGGGCGCGGGTCACACTCTCGTCCCCTCAAGTGCATGTGTACAAGGCG
ACATTGTCCATCACTGCCCAATTGAATTGGCTGCAATTTGTCATGTCGTA
TTATTTTTATTCGACTGCGTTTTGCGCGATTCTTTTGCTCGCAACCATGC
TTGCAGCGGTGGTGGGCTTTGTCTACGTGTGGACCGAACTGGAGGGGGAG
GAGGAGGAGGCTCGGCAGGGAGGGAGGGAGGACGAAGAGGAGGATGCTTG
GGGGAATGGAGGGGGTTTGATGGCGGGAGGAAGTGGTAGAAGAGGAGGAG
GGAGGGGAAGAGGAAGAGAGGGAGGCGGCTTTGGTGCGGGAAGTCATCAC
TACCAGCAGCAGAACGCGGCGAACGATGAGACGGAGACTAGCTGGAGGAG
GAGGGAGAGAAGAGCTGCAGACCATCTCTGGGAGTCCTACAGTTGTGCCC
ATGTCGTCAAGTCAGAGTGTGACGTTGACGGGGGGAGGGACGCAGGGCGG
GGGGGATGA

Synonyms

Publications