jgi.p|Nanoce1779_2|606913, mRNA_9722 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|606913
Unique NamemRNA_9722
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length541
Alignment locationscaffold_37:9991..11065 +

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Properties
Property NameValue
TranscriptId606999
TrackFilteredModels2
ProteinId606913
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_37supercontigscaffold_37:9991..11065 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|606913gene_9722Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|606913mRNA_9722-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9722CDS_9722Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9722 ID=mRNA_9722|Name=jgi.p|Nanoce1779_2|606913|organism=Nannochloropsis oceanica|type=mRNA|length=541bp
ACAGATACACACGCAACCATGCCTCACTCGTTTGGGTACCGGGCGCGGAC
GCGCTCCATGTTCCGCCGGGCCTTTGGTGAGCACGGTGTGAACCCCTTGT
CTATCTACATGCGCAACTACAAGGTCGGCGATGTCGTGGACATCAAGGCC
AACTCATCCATCCAGAAGGGTATGCCCTTCAAGGGCTACCACGGCCGCAC
GGGTGTGGTGTACAACGTGACGAAGCGCGCCCTCGGCGTGGAGGTGAATA
AGCTGGTGAATGGCAAGATCATCAAGAAGAAGATTAATATCCGCGTAGAG
CACCTTCGGCCCACGACTTCTCGTAAGGAGTGGATCGAGCGCGTCCGTCA
GAATGAGCTGCAGAAGAAGGCACTCAAGGCAGGGGAGAAGGAATTCAGGC
AGTTGAAACGCCTACCGAAGGCGCCCAAGGAGGCCTTTATGCTGAAATAC
GAGGAGAAGGAGGTGCAGACGATTCAGGCGATTCCCTTCGTGGACTTGGT
CTAAGCTGAGGGAGGGTGGGAGGGAGGGAAAGAGGAAGAGG
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protein sequence of jgi.p|Nanoce1779_2|606913

>mRNA_9722-protein ID=mRNA_9722-protein|Name=jgi.p|Nanoce1779_2|606913|organism=Nannochloropsis oceanica|type=polypeptide|length=162bp
MPHSFGYRARTRSMFRRAFGEHGVNPLSIYMRNYKVGDVVDIKANSSIQK
GMPFKGYHGRTGVVYNVTKRALGVEVNKLVNGKIIKKKINIRVEHLRPTT
SRKEWIERVRQNELQKKALKAGEKEFRQLKRLPKAPKEAFMLKYEEKEVQ
TIQAIPFVDLV*
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mRNA from alignment at scaffold_37:9991..11065+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9722 ID=mRNA_9722|Name=jgi.p|Nanoce1779_2|606913|organism=Nannochloropsis oceanica|type=mRNA|length=1075bp|location=Sequence derived from alignment at scaffold_37:9991..11065+ (Nannochloropsis oceanica)
ACAGATACACACGCAACCATGCCTCACTCGTTTGGGTACCGGGCGCGGAC
GCGCTCCATGTTCCGCCGGGCCTTTGGTGAGCACGGTGTGAACCCCTTGT
CTATCTACATGCGCAACTACAAGGTACGTTTGGGTTTCTTCGCAGTGTTA
GGGCGTAGATTGTGGCTGGGAGAGTGAGTATGCGCGGAGAGAGACAACGC
TGGGCAGCGGGGAAAGGCTGGTTTGAAAGGGCTGAGGTGCTGCGTCATAT
GATGATGGAGGGAGAAGCTCGGCGTGGTCTTGGCTTTGGTATCTTGTTCG
GCAGTATTGATGCCACAGAGTTCTTGCAAACGTGGAAACTGAGGGATTGA
TAGAGGGCACAAATCTTTATTGAGCCTTCATAAGCCTTCGTGCCCGGCGT
GGTGCCTGACAGGAGCCTTGTGCTGGCGCTGATGCTTGATGCGGAGCGTG
AAGACAACGTTGGGAGCGGGCGGAAGGGGAGGACGGATGGAGGGAGGGAA
AGAGAGGGGGAAAAGGAAACTTGCGAAATCAGTGGAGTATACTTGATTGA
GTCTGGAAAATAACGGCTGGATGGGTCTTTCTTGAAGCAATATTCTCATT
CCTCAATTTCTCCCTCTTTCCTTTCCTCCCTCCTTCCTTCTCCTCATTAT
CCCCTAGGTCGGCGATGTCGTGGACATCAAGGCCAACTCATCCATCCAGA
AGGGTATGCCCTTCAAGGGCTACCACGGCCGCACGGGTGTGGTGTACAAC
GTGACGAAGCGCGCCCTCGGCGTGGAGGTGAATAAGCTGGTGAATGGCAA
GATCATCAAGAAGAAGATTAATATCCGCGTAGAGCACCTTCGGCCCACGA
CTTCTCGTAAGGAGTGGATCGAGCGCGTCCGTCAGAATGAGCTGCAGAAG
AAGGCACTCAAGGCAGGGGAGAAGGAATTCAGGCAGTTGAAACGCCTACC
GAAGGCGCCCAAGGAGGCCTTTATGCTGAAATACGAGGAGAAGGAGGTGC
AGACGATTCAGGCGATTCCCTTCGTGGACTTGGTCTAAGCTGAGGGAGGG
TGGGAGGGAGGGAAAGAGGAAGAGG
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Coding sequence (CDS) from alignment at scaffold_37:9991..11065+

>mRNA_9722 ID=mRNA_9722|Name=jgi.p|Nanoce1779_2|606913|organism=Nannochloropsis oceanica|type=CDS|length=972bp|location=Sequence derived from alignment at scaffold_37:9991..11065+ (Nannochloropsis oceanica)
ATGCCTCACTCGTTTGGGTACCGGGCGCGGACGCGCTCCATGTTCCGCCG
GGCCTTTGGTGAGCACGGTGTGAACCCCTTGTCTATCTACATGCGCAACT
ACAAGGTCGGCGATGTCGTGGACATCAAGGCCAACTCATCCATCCAGAAG
GGTATGCCCTTCAAGGGCTACCACGGCCGCACGGGTGTGGTGTACAACGT
GACGAAGCGCGCCCTCGGCGTGGAGGTGAATAAGCTGGTGAATGGCAAGA
TCATCAAGAAGAAGATTAATATCCGCGTAGAGCACCTTCGGCCCACGACT
TCTCGTAAGGAGTGGATCGAGCGCGTCCGTCAGAATGAGCTGCAGAAGAA
GGCACTCAAGGCAGGGGAGAAGGAATTCAGGCAGTTGAAACGCCTACCGA
AGGCGCCCAAGGAGGCCTTTATGCTGAAATACGAGGAGAAGGAGGTGCAG
ACGATTCAGGCGATTCCCTTCGTGGACTTGGTCTAAATGCCTCACTCGTT
TGGGTACCGGGCGCGGACGCGCTCCATGTTCCGCCGGGCCTTTGGTGAGC
ACGGTGTGAACCCCTTGTCTATCTACATGCGCAACTACAAGGTCGGCGAT
GTCGTGGACATCAAGGCCAACTCATCCATCCAGAAGGGTATGCCCTTCAA
GGGCTACCACGGCCGCACGGGTGTGGTGTACAACGTGACGAAGCGCGCCC
TCGGCGTGGAGGTGAATAAGCTGGTGAATGGCAAGATCATCAAGAAGAAG
ATTAATATCCGCGTAGAGCACCTTCGGCCCACGACTTCTCGTAAGGAGTG
GATCGAGCGCGTCCGTCAGAATGAGCTGCAGAAGAAGGCACTCAAGGCAG
GGGAGAAGGAATTCAGGCAGTTGAAACGCCTACCGAAGGCGCCCAAGGAG
GCCTTTATGCTGAAATACGAGGAGAAGGAGGTGCAGACGATTCAGGCGAT
TCCCTTCGTGGACTTGGTCTAA
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Synonyms
Publications