jgi.p|Nanoce1779_2|574834, mRNA_972 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|574834
Unique NamemRNA_972
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1923
Alignment locationscaffold_2:894364..896389 -

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Properties
Property NameValue
TranscriptId574920
TrackFilteredModels2
ProteinId574834
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:894364..896389 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|574834gene_972Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|574834mRNA_972-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_972CDS_972Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_972 ID=mRNA_972|Name=jgi.p|Nanoce1779_2|574834|organism=Nannochloropsis oceanica|type=mRNA|length=1923bp
ACTGTAATTTATCTTCTCTACTTTGTGGAAAAAATTGCCTCCTCAAGCAC
CAAGCCGAGGGAGGACATCTGGAAAACAAATTTTTAGGTCATAGCCATCC
GACATAAGGTTATCCATCTAACTTTTTTGAAGGCATCCGAATAAATTTAT
TTTATACTCTTACACTTTGTACAAGAACGCTTAATGGAGGGCGAACTACA
TGACCCTTTTTTTTTTTTAACACCTTTATGAGAGCCTTCTTGGCCGAGTT
GACGTCCCCCTCTTCTTCATTTCCACAATGTGGACATTTTTAGACTTTGG
TGTTCCATAGCATTCTGTTCGCCTGACCACAAGAGCTGCATGTTTTACTC
GTTCCATGCTCCTCGAGATCCAAAAACGACTTTTCCACACGCCTCAGCCT
TCAGGGCCGCCCAAGAAACGCGTTGGCGCGCCGGCTCACTGCCCCGTGTC
GTGGGGGTAAACGAGGTCACGGTCGGCCAGAAATCGAGGCCTTCGAGGTG
CGAGGACGCTTGCACCCACGCAAGGGCTTCGTTACTTTGCGGCTCGAGTT
ACCGTTAACACGCTCTACTAACTCGTGTACGAAGACTGCCGAAGTCATGG
AGTGCGCCACGCTCCGTACGGTCCGTCGCACCTTTTTCACCATGACTCTC
ACCTTCATATTACAGACAGACACAGCCACACATACACAGAAAACCATAAA
CAGACAAACGCAAAGGCAGGCATGTATACAGACACACATACATGCAGACA
CAGACACGCGCTGATACAAACACAGAGACAGACACACAATCCCCTCTCCC
AAACCTCCCCCAAGACAGACACAGACTATCACAGAATAGAGAATAGAATA
ACACGTCAAGAACGAGTCCAGTGAGCACATGAATCGTTTTAAGGAGACAA
GGAAGCAGGATCAGCTGGAGGTGGCAGAAAAGCAGAGTAGGAGCCTTCTT
CCCAATGGCTACCATGATGATGAGGACTACTTGAGCGGTACGTTTGTTGA
CCAGCAGCCGACCACAAACATTGGTAGCAAGAGGGCTGTTCAGCCTCGGC
CTTCTAAAGCAACGTCCAAAAAATCTAAGGCAGCAAATGCGGAGGAGAAA
TTGCGAGAGGGAATGAATACACCATTGCCTCAGGACAATGTAGGGTTGCG
GATGCTGAAATTGATGGGCTACAAGGAAGGCCATGGTATTGGCAAGAGCG
CAGACGGTATCACGGCGCCAATTGCCGTGGTAAAGAAGACAGACCGCGCG
GGGCTTGGCCAGGCAGAGCGCCAGAGCGAAGCGCACCAGCGGCTGGAGCA
ATGGACACAGGCGCGGGTTGAACTTCTTGAGCAATGCAAAGAAGACTTCC
AGGTGGCCATGTCTAATCGGTTTGCGGAGCGGCGCGTTGCGTCGAATTTG
ACAAAGGCGATGAAGACAATCGAAACTTTAGATACGCGGGCGGGTCGGGA
GATGTCCTGTTTGTGGTGGACCAGCATAGAGGAGGAGGAAAACAAGGGGA
TGGATGCGAGGATCAGAGATCGAAGGAAGGAGGGGGTGGACGAGCCATCT
AACGCCCTATTGGCCACGGGAACAGAAACACACACAGTGCATACTCAAGA
GGAGGCGGCCGCTGCCGTGCCGCAGGGACAAACGGAATGTGGAGGAGAAG
AAGAAAGAGAAGGCTTAGCTATAGTAGATGGCAAGCACGAACTTTGGGAC
ACGTTGAGCACATCAGAGAAATTAAGCGTGGCGACTGCTTACTTGCGGCA
GGAGCACCGCTATTGTCTCTTTTGCGGACATCAGTACGGTAGCATAGACG
AATTACGAAAAGAATGCCCGGGAAAAAGCGAAGATGACCACTAATTGACA
AGCAAGGCTGTTCATGCGACCGATAGACCAATGTGAACAAAACGGGGGGA
ATGTACAGTAAATGCCCGGCTTG
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protein sequence of jgi.p|Nanoce1779_2|574834

>mRNA_972-protein ID=mRNA_972-protein|Name=jgi.p|Nanoce1779_2|574834|organism=Nannochloropsis oceanica|type=polypeptide|length=322bp
MNRFKETRKQDQLEVAEKQSRSLLPNGYHDDEDYLSGTFVDQQPTTNIGS
KRAVQPRPSKATSKKSKAANAEEKLREGMNTPLPQDNVGLRMLKLMGYKE
GHGIGKSADGITAPIAVVKKTDRAGLGQAERQSEAHQRLEQWTQARVELL
EQCKEDFQVAMSNRFAERRVASNLTKAMKTIETLDTRAGREMSCLWWTSI
EEEENKGMDARIRDRRKEGVDEPSNALLATGTETHTVHTQEEAAAAVPQG
QTECGGEEEREGLAIVDGKHELWDTLSTSEKLSVATAYLRQEHRYCLFCG
HQYGSIDELRKECPGKSEDDH*
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mRNA from alignment at scaffold_2:894364..896389-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_972 ID=mRNA_972|Name=jgi.p|Nanoce1779_2|574834|organism=Nannochloropsis oceanica|type=mRNA|length=2026bp|location=Sequence derived from alignment at scaffold_2:894364..896389- (Nannochloropsis oceanica)
ACTGTAATTTATCTTCTCTACTTTGTGGAAAAAATTGCCTCCTCAAGCAC
CAAGCCGAGGGAGGACATCTGGAAAACAAATTTTTAGGTCATAGCCATCC
GACATAAGGTTATCCATCTAACTTTTTTGAAGGCATCCGAATAAATTTAT
TTTATACTCTTACACTTTGTACAAGAACGCTTAATGGAGGGCGAACTACA
TGACCCTTTTTTTTTTTTAACACCTTTATGAGAGCCTTCTTGGCCGAGTT
GACGTCCCCCTCTTCTTCATTTCCACAATGTGGACATTTTTAGACTTTGG
TGTTCCATAGCATTCTGTTCGCCTGACCACAAGAGCTGCATGTTTTACTC
GTTCCATGCTCCTCGAGATCCAAAAACGACTTTTCCACACGCCTCAGCCT
TCAGGGCCGCCCAAGAAACGCGTTGGCGCGCCGGCTCACTGCCCCGTGTC
GTGGGGGTAAACGAGGTCACGGTCGGCCAGAAATCGAGGCCTTCGAGGTG
CGAGGACGCTTGCACCCACGCAAGGGCTTCGTTACTTTGCGGCTCGAGTT
ACCGTTAACACGCTCTACTAACTCGTGTACGAAGACTGCCGAAGTCATGG
AGTGCGCCACGCTCCGTACGGTCCGTCGCACCTTTTTCACCATGACTCTC
ACCTTCATATTACAGACAGACACAGCCACACATACACAGAAAACCATAAA
CAGACAAACGCAAAGGCAGGCATGTATACAGACACACATACATGCAGACA
CAGACACGCGCTGATACAAACACAGAGACAGACACACAATCCCCTCTCCC
AAACCTCCCCCAAGACAGACACAGACTATCACAGAATAGAGAATAGAATA
ACACGTCAAGAACGAGTCCAGTGAGCACATGAATCGTTTTAAGGAGACAA
GGAAGCAGGATCAGCTGGAGGTGGCAGAAAAGCAGAGTAGGAGCCTTCTT
CCCAATGGCTACCATGATGATGAGGACTACTTGAGCGGTACGTTTGTTGA
CCAGCAGCCGACCACAAACATTGGTAGCAAGAGGGCTGTTCAGCCTCGGC
CTTCTAAAGCAACGTCCAAAAAATCTAAGGCAGCAAATGCGGAGGAGAAA
TTGCGAGAGGGAATGAATACACCATTGCCTCAGGTAATGATTGTCCTCGA
GACGTGCCGCTCGCTTCTCCAGGCCATCTGTCCGCCCTCCTCAACTCTTC
TCATGTTCGCTCTACACCCCTCCTTTACCCTTACAGGACAATGTAGGGTT
GCGGATGCTGAAATTGATGGGCTACAAGGAAGGCCATGGTATTGGCAAGA
GCGCAGACGGTATCACGGCGCCAATTGCCGTGGTAAAGAAGACAGACCGC
GCGGGGCTTGGCCAGGCAGAGCGCCAGAGCGAAGCGCACCAGCGGCTGGA
GCAATGGACACAGGCGCGGGTTGAACTTCTTGAGCAATGCAAAGAAGACT
TCCAGGTGGCCATGTCTAATCGGTTTGCGGAGCGGCGCGTTGCGTCGAAT
TTGACAAAGGCGATGAAGACAATCGAAACTTTAGATACGCGGGCGGGTCG
GGAGATGTCCTGTTTGTGGTGGACCAGCATAGAGGAGGAGGAAAACAAGG
GGATGGATGCGAGGATCAGAGATCGAAGGAAGGAGGGGGTGGACGAGCCA
TCTAACGCCCTATTGGCCACGGGAACAGAAACACACACAGTGCATACTCA
AGAGGAGGCGGCCGCTGCCGTGCCGCAGGGACAAACGGAATGTGGAGGAG
AAGAAGAAAGAGAAGGCTTAGCTATAGTAGATGGCAAGCACGAACTTTGG
GACACGTTGAGCACATCAGAGAAATTAAGCGTGGCGACTGCTTACTTGCG
GCAGGAGCACCGCTATTGTCTCTTTTGCGGACATCAGTACGGTAGCATAG
ACGAATTACGAAAAGAATGCCCGGGAAAAAGCGAAGATGACCACTAATTG
ACAAGCAAGGCTGTTCATGCGACCGATAGACCAATGTGAACAAAACGGGG
GGAATGTACAGTAAATGCCCGGCTTG
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Coding sequence (CDS) from alignment at scaffold_2:894364..896389-

>mRNA_972 ID=mRNA_972|Name=jgi.p|Nanoce1779_2|574834|organism=Nannochloropsis oceanica|type=CDS|length=1932bp|location=Sequence derived from alignment at scaffold_2:894364..896389- (Nannochloropsis oceanica)
GACAATGTAGGGTTGCGGATGCTGAAATTGATGGGCTACAAGGAAGGCCA
TGGTATTGGCAAGAGCGCAGACGGTATCACGGCGCCAATTGCCGTGGTAA
AGAAGACAGACCGCGCGGGGCTTGGCCAGGCAGAGCGCCAGAGCGAAGCG
CACCAGCGGCTGGAGCAATGGACACAGGCGCGGGTTGAACTTCTTGAGCA
ATGCAAAGAAGACTTCCAGGTGGCCATGTCTAATCGGTTTGCGGAGCGGC
GCGTTGCGTCGAATTTGACAAAGGCGATGAAGACAATCGAAACTTTAGAT
ACGCGGGCGGGTCGGGAGATGTCCTGTTTGTGGTGGACCAGCATAGAGGA
GGAGGAAAACAAGGGGATGGATGCGAGGATCAGAGATCGAAGGAAGGAGG
GGGTGGACGAGCCATCTAACGCCCTATTGGCCACGGGAACAGAAACACAC
ACAGTGCATACTCAAGAGGAGGCGGCCGCTGCCGTGCCGCAGGGACAAAC
GGAATGTGGAGGAGAAGAAGAAAGAGAAGGCTTAGCTATAGTAGATGGCA
AGCACGAACTTTGGGACACGTTGAGCACATCAGAGAAATTAAGCGTGGCG
ACTGCTTACTTGCGGCAGGAGCACCGCTATTGTCTCTTTTGCGGACATCA
GTACGGTAGCATAGACGAATTACGAAAAGAATGCCCGGGAAAAAGCGAAG
ATGACCACTAAATGAATCGTTTTAAGGAGACAAGGAAGCAGGATCAGCTG
GAGGTGGCAGAAAAGCAGAGTAGGAGCCTTCTTCCCAATGGCTACCATGA
TGATGAGGACTACTTGAGCGGTACGTTTGTTGACCAGCAGCCGACCACAA
ACATTGGTAGCAAGAGGGCTGTTCAGCCTCGGCCTTCTAAAGCAACGTCC
AAAAAATCTAAGGCAGCAAATGCGGAGGAGAAATTGCGAGAGGGAATGAA
TACACCATTGCCTCAGGACAATGTAGGGTTGCGGATGCTGAAATTGATGG
GCTACAAGGAAGGCCATGGTATTGGCAAGAGCGCAGACGGTATCACGGCG
CCAATTGCCGTGGTAAAGAAGACAGACCGCGCGGGGCTTGGCCAGGCAGA
GCGCCAGAGCGAAGCGCACCAGCGGCTGGAGCAATGGACACAGGCGCGGG
TTGAACTTCTTGAGCAATGCAAAGAAGACTTCCAGGTGGCCATGTCTAAT
CGGTTTGCGGAGCGGCGCGTTGCGTCGAATTTGACAAAGGCGATGAAGAC
AATCGAAACTTTAGATACGCGGGCGGGTCGGGAGATGTCCTGTTTGTGGT
GGACCAGCATAGAGGAGGAGGAAAACAAGGGGATGGATGCGAGGATCAGA
GATCGAAGGAAGGAGGGGGTGGACGAGCCATCTAACGCCCTATTGGCCAC
GGGAACAGAAACACACACAGTGCATACTCAAGAGGAGGCGGCCGCTGCCG
TGCCGCAGGGACAAACGGAATGTGGAGGAGAAGAAGAAAGAGAAGGCTTA
GCTATAGTAGATGGCAAGCACGAACTTTGGGACACGTTGAGCACATCAGA
GAAATTAAGCGTGGCGACTGCTTACTTGCGGCAGGAGCACCGCTATTGTC
TCTTTTGCGGACATCAGTACGGTAGCATAGACGAATTACGAAAAGAATGC
CCGGGAAAAAGCGAAGATGACCACTAAATGAATCGTTTTAAGGAGACAAG
GAAGCAGGATCAGCTGGAGGTGGCAGAAAAGCAGAGTAGGAGCCTTCTTC
CCAATGGCTACCATGATGATGAGGACTACTTGAGCGGTACGTTTGTTGAC
CAGCAGCCGACCACAAACATTGGTAGCAAGAGGGCTGTTCAGCCTCGGCC
TTCTAAAGCAACGTCCAAAAAATCTAAGGCAGCAAATGCGGAGGAGAAAT
TGCGAGAGGGAATGAATACACCATTGCCTCAG
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Synonyms
Publications