jgi.p|Nanoce1779_2|607488, mRNA_9718 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|607488
Unique NamemRNA_9718
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length527
Alignment locationscaffold_38:213380..214055 -

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Properties
Property NameValue
TranscriptId607574
TrackFilteredModels2
ProteinId607488
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_38supercontigscaffold_38:213380..214055 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|607488gene_9718Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|607488mRNA_9718-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9718CDS_9718Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9718 ID=mRNA_9718|Name=jgi.p|Nanoce1779_2|607488|organism=Nannochloropsis oceanica|type=mRNA|length=527bp
AGGCGAAAGGCGTGAGATGGTCGCAATCTACACAAGCAGGGGAGGCATGT
CCCCTCCCGACGCCACACTAGTCATTGACACCCTCCTCCAGTACCCTCGG
TTCTTCATCGACAACATGGTGGTGTGGGAGCTTGGGCTGCTGCCTTTCAC
GAAAGATTTCAGTGTTCTGCGCGGGACTGTCGCTCTATTCTCCTCCCTTT
TTGCCGGCATCATCCCCTTGCTGCCCTTCTGCTTTCGCCCTCTCTCCTCC
TCTTTGCCTTCCCATCTCCCCGTCTATCTTTCCGCCGCCTTTGCCTTCCT
CCTCCTCTTTGGGCTGGGCGTGACCAAGGCCCGTCTGCTTGACCAGCCGC
GTGCTTCCACCGTCGGTGTTTTATTCGGAATGGGGACTGCTGTAGCTGCT
ATTAGTCTCGGTATCGGTGCCGGGCTCGGCGCAGTGTTGGTTTGAGTGAA
AGTGTGAAAGAAGGAACGAAAGGAGGGATGGAGGGACAGAGCAACAGCGA
TGTGTGTATAGAACAGAATGAGGTACA
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protein sequence of jgi.p|Nanoce1779_2|607488

>mRNA_9718-protein ID=mRNA_9718-protein|Name=jgi.p|Nanoce1779_2|607488|organism=Nannochloropsis oceanica|type=polypeptide|length=143bp
MVAIYTSRGGMSPPDATLVIDTLLQYPRFFIDNMVVWELGLLPFTKDFSV
LRGTVALFSSLFAGIIPLLPFCFRPLSSSLPSHLPVYLSAAFAFLLLFGL
GVTKARLLDQPRASTVGVLFGMGTAVAAISLGIGAGLGAVLV*
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mRNA from alignment at scaffold_38:213380..214055-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9718 ID=mRNA_9718|Name=jgi.p|Nanoce1779_2|607488|organism=Nannochloropsis oceanica|type=mRNA|length=676bp|location=Sequence derived from alignment at scaffold_38:213380..214055- (Nannochloropsis oceanica)
AGGCGAAAGGCGTGAGATGGTCGCAATCTACACAAGCAGGGGAGGCATGT
CCCCTCCCGACGCCACACTAGTCATTGACACCCTCCTCCAGTACCCTCGG
TTCTTCATCGACAACATGGTGGTGTGGGAGCTTGGGCTGCTGCCTTTCAC
GAAAGATTTCAGTGTTCTGCGCGGTTAGGAGAGAGGGAGGGAAGGGAGGA
AGGCATTAAGGGAGGGGGAAAAGGAGGGAATGGGCATGTACTTCGCATCG
CCGCTTCAACCGTTGACTTTGAACACTCTTCTCTCCACTTCCCTCCTATC
CTCCATGCTACGCGCGAAACAGGGACTGTCGCTCTATTCTCCTCCCTTTT
TGCCGGCATCATCCCCTTGCTGCCCTTCTGCTTTCGCCCTCTCTCCTCCT
CTTTGCCTTCCCATCTCCCCGTCTATCTTTCCGCCGCCTTTGCCTTCCTC
CTCCTCTTTGGGCTGGGCGTGACCAAGGCCCGTCTGCTTGACCAGCCGCG
TGCTTCCACCGTCGGTGTTTTATTCGGAATGGGGACTGCTGTAGCTGCTA
TTAGTCTCGGTATCGGTGCCGGGCTCGGCGCAGTGTTGGTTTGAGTGAAA
GTGTGAAAGAAGGAACGAAAGGAGGGATGGAGGGACAGAGCAACAGCGAT
GTGTGTATAGAACAGAATGAGGTACA
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Coding sequence (CDS) from alignment at scaffold_38:213380..214055-

>mRNA_9718 ID=mRNA_9718|Name=jgi.p|Nanoce1779_2|607488|organism=Nannochloropsis oceanica|type=CDS|length=858bp|location=Sequence derived from alignment at scaffold_38:213380..214055- (Nannochloropsis oceanica)
GGACTGTCGCTCTATTCTCCTCCCTTTTTGCCGGCATCATCCCCTTGCTG
CCCTTCTGCTTTCGCCCTCTCTCCTCCTCTTTGCCTTCCCATCTCCCCGT
CTATCTTTCCGCCGCCTTTGCCTTCCTCCTCCTCTTTGGGCTGGGCGTGA
CCAAGGCCCGTCTGCTTGACCAGCCGCGTGCTTCCACCGTCGGTGTTTTA
TTCGGAATGGGGACTGCTGTAGCTGCTATTAGTCTCGGTATCGGTGCCGG
GCTCGGCGCAGTGTTGGTTTGAATGGTCGCAATCTACACAAGCAGGGGAG
GCATGTCCCCTCCCGACGCCACACTAGTCATTGACACCCTCCTCCAGTAC
CCTCGGTTCTTCATCGACAACATGGTGGTGTGGGAGCTTGGGCTGCTGCC
TTTCACGAAAGATTTCAGTGTTCTGCGCGGGACTGTCGCTCTATTCTCCT
CCCTTTTTGCCGGCATCATCCCCTTGCTGCCCTTCTGCTTTCGCCCTCTC
TCCTCCTCTTTGCCTTCCCATCTCCCCGTCTATCTTTCCGCCGCCTTTGC
CTTCCTCCTCCTCTTTGGGCTGGGCGTGACCAAGGCCCGTCTGCTTGACC
AGCCGCGTGCTTCCACCGTCGGTGTTTTATTCGGAATGGGGACTGCTGTA
GCTGCTATTAGTCTCGGTATCGGTGCCGGGCTCGGCGCAGTGTTGGTTTG
AATGGTCGCAATCTACACAAGCAGGGGAGGCATGTCCCCTCCCGACGCCA
CACTAGTCATTGACACCCTCCTCCAGTACCCTCGGTTCTTCATCGACAAC
ATGGTGGTGTGGGAGCTTGGGCTGCTGCCTTTCACGAAAGATTTCAGTGT
TCTGCGCG
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Synonyms
Publications