jgi.p|Nanoce1779_2|607480, mRNA_9717 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|607480
Unique Name	mRNA_9717
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1319
Alignment location	scaffold_38:211125..213307 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	607566
Track	FilteredModels2
ProteinId	607480

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_38	supercontig	scaffold_38:211125..213307 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|607480	gene_9717	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|607480	mRNA_9717-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_9717	CDS_9717	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_38:211125..213307+
coding sequence from alignment at scaffold_38:211125..213307+

mRNA sequence

>mRNA_9717 ID=mRNA_9717|Name=jgi.p|Nanoce1779_2|607480|organism=Nannochloropsis oceanica|type=mRNA|length=1319bp
GGGTTCGTGTCCTTCTTGCGTCCTTCATATACCGCCACCTATACGACCTC
CCATCCTCCCATTCCCATCACAACACGTAAAATCTAAGGATAACGATCTG
CACCTTCTCCACGATGGCGCCGTCGCAGTGGCGGAGGGAAAATTTCCGCG
GGCCCAGCGCCAACACCACCATGCCTCTTCTCCTTCTGCTTCCCTCTCTC
TTTCTCCTTGTCTGCCTGCCCTCCCCCCTGCACGCCTTGGACTTCCAGGA
CATCCGCGACGGCTTCTCAGGGGCATCGGATGACATTAGAAAGGGCATGA
ATGGGCTGCGGTTGCCGGGCATGTGCGCCTACTACGACCCCATCGAGGAT
CGTTGCCACGTCAACAGCAACAATGGCGTCCGCACTGAGGTGGCTGGCAG
GTGTGGCGACAACATGAAAGACATCATCCCCACCTGTCGCGGACACCCTG
ACGCCTATATGCCACAACCCCAAGTGCCTACTACGCCCGCAAAGCCTTTG
CCGGTACCACCTAAGACGCCTGTGGAAGTGAAGCCAGATGGAGAGATCCC
GGGCTCTCCAACGCCGTTGTTGCCGCCGCCTCCGCAGAAACCGACGTCGG
AACGTCCTGTCCGAGCACCCACCGGCAAGCAGGGCACTCAGAACCCTCCT
CGCTGGCCTCCCTTGTCAGGAAAAGACAGCGGAGAGCCCGTGGCGGACGT
GGTAGAGGAGGAGAAGGAGAGAAGGAGGAGAGGCTTGAAAGGATTCGCTC
TCTTCGGCGTTCTCATTGGAACGGCCATCTGTGTGGCGATTCTCTCCGTG
TTGGGCGTGGGGTATTACGCGTATCGCACCAGGCAGAAGACTATGCGACT
GCGAGAGCAAGTCCTTACAGCTCGTGAGGCTCGGGCGCATGTCACATTCG
CCGGCATATCTCCCTCGTTGCCATCAGTCCCGACGCCTCGCTCCTTAGGA
TTGTAAATTAGACCGAGGAATGTAAATAATTGAGTGAGAGGACAGTGATG
CAAGAGGGAAAAAACTAACTAAAACGACCAGAGAAAATAAAGAGGTAGAG
CACTTACTGTCGCATTCTCTTTCCTTTGCCGCCGCTTGCTTCCCCTTGTG
CTGTTCTTCGAGCTGTACCGCCACATCGTCCAGACCGGCAGTGTACTATG
ATAAGGGACGTGATCTTGATCCCACCCTCTGTGCTGGCGCCCTGCTTCAC
GGTATTATCTCGATTCATGTAAGGTGGGTAGTGGAGAGGAAGGCAGCAAG
GGAGCATATATGCAAGTTATATCCTGTTTTCTTCGTCGTTTCGCTGTTCA
TCACTTATTAGCATTTATT

protein sequence of jgi.p|Nanoce1779_2|607480

>mRNA_9717-protein ID=mRNA_9717-protein|Name=jgi.p|Nanoce1779_2|607480|organism=Nannochloropsis oceanica|type=polypeptide|length=281bp
MAPSQWRRENFRGPSANTTMPLLLLLPSLFLLVCLPSPLHALDFQDIRDG
FSGASDDIRKGMNGLRLPGMCAYYDPIEDRCHVNSNNGVRTEVAGRCGDN
MKDIIPTCRGHPDAYMPQPQVPTTPAKPLPVPPKTPVEVKPDGEIPGSPT
PLLPPPPQKPTSERPVRAPTGKQGTQNPPRWPPLSGKDSGEPVADVVEEE
KERRRRGLKGFALFGVLIGTAICVAILSVLGVGYYAYRTRQKTMRLREQV
LTAREARAHVTFAGISPSLPSVPTPRSLGL*

mRNA from alignment at scaffold_38:211125..213307+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9717 ID=mRNA_9717|Name=jgi.p|Nanoce1779_2|607480|organism=Nannochloropsis oceanica|type=mRNA|length=2183bp|location=Sequence derived from alignment at scaffold_38:211125..213307+ (Nannochloropsis oceanica)
GGGTTCGTGTCCTTCTTGCGTCCTTCATATACCGCCACCTATACGACCTC
CCATCCTCCCATTCCCATCACAACACGTAAAATCTAAGGATAACGATCTG
CACCTTCTCCACGATGGCGCCGTCGCAGTGGCGGAGGGAAAATTTCCGCG
GGCCCAGCGCCAACACCACCATGCCTCTTCTCCTTCTGCTTCCCTCTCTC
TTTCTCCTTGTCTGCCTGCCCTCCCCCCTGCACGCCTTGGACTTCCAGGA
CATCCGCGACGGCTTCTCAGGGGCATCGGATGACATTAGAAAGGGCATGA
ATGGGCTGCGGTTGCCGGGCATGTGCGCGTACGTCCGTCTTTTTCTCTGC
ATGTTTTCCCACTTCGCCTTCTCACGTTTCTCCTTCCCTGGTCATGGTTC
CATGAGTCCATGTCTCATGTCCCACTTTCTCTCAAATTTCATGTATGGGT
ATGCCCATATATCAATACATTTTATAAGCACAGAAATATATGTACGGATT
CTGGCATCCAGCATGTGTGAATATACGTGTACCTTCCCCTGTCCTTTTGT
CATCCTTCGAGCCCTTTCATCCACTCCCTTTCATCTCATGCTCAGTCACT
ACCTATCAACCCTACCTTCCCTCCTTGTACTCCTGCCTCATCAGCTACTA
CGACCCCATCGAGGATCGTTGCCACGTCAACAGCAACAATGGCGTCCGCA
CTGAGGTGGCTGGCAGGTGTGGCGACAACATGAAAGACATCATCCCCACC
TGTCGCGGACACCCTGACGCCTATATGCCACAACCCCAAGTGCCTACTAC
GCCCGCAAAGCCTTTGCCGGTACCACCTAAGACGCCTGTGGAAGTGAAGC
CAGATGGAGAGATCCCGGGCTCTCCAACGCCGTTGTTGCCGCCGCCTCCG
CAGGTACGCCCCTGTTGATGTGTCTCATGTGATAAGCCTTTGCCGCTATT
CCCATTAATGCATCTTTTTGATAAAATTAAATCCTTTTCCCCTTTCTCGT
TCAACGAATCTGTTCCTTTTGGTTGTCCCTTGGTGTTGTCTGCCTTGAAT
ATATTTATTTACCTTCCTTTCCCCAACCCCCTTAAATCTGCCACCTCCTT
TACCCTCTTCACATCTAACCCACCCCCGACCATTATCCCTTCACGGACAC
AGAAACCGACGTCGGAACGTCCTGTCCGAGCACCCACCGGCAAGCAGGGC
ACTCAGAACCCTCCTCGCTGGCCTCCCTTGTCAGGAAAAGACAGCGGAGA
GCCCGTGGCGGACGTGGTAGAGGAGGAGAAGGAGAGAAGGAGGAGAGGCT
TGAAAGGATTCGCTCTCTTCGGCGTTCTCATTGGAACGGCCATCTGTGTG
GCGATTCTCTCCGTGTTGGGCGTGGGGTATTACGCGTATCGCACCAGGCA
GAAGACTATGCGACTGCGAGGTAGGTCGAGGGGGGCGATGAGCGGTTGAG
AGGAGAAGGCGGCAGCCGCATGCGTGTGTGAATGGGCGGCACTTCTTTTT
TCTCAAAATTTTGGGAGTGCATTACGCGACATGCGAGGCTGGACCCGCGT
TTAATGTCAACGTTGCGGGCTAACATGTCATTGGCGGAAGACTGGTTGCG
AACACATTCGTGACGCAGATGGATGATCCTTCCTTTGTCCTTCTCTCTCC
TCTCATCCCTACCCCCTTCGTTTCTCTATTCCCCGCTCCCATATCACATC
TCTTTATTCCCCTTAACAGAGCAAGTCCTTACAGCTCGTGAGGCTCGGGC
GCATGTCACATTCGCCGGCATATCTCCCTCGTTGCCATCAGTCCCGACGC
CTCGCTCCTTAGGATTGTAAATTAGACCGAGGAATGTAAATAATTGAGTG
AGAGGACAGTGATGCAAGAGGGAAAAAACTAACTAAAACGACCAGAGAAA
ATAAAGAGGTAGAGCACTTACTGTCGCATTCTCTTTCCTTTGCCGCCGCT
TGCTTCCCCTTGTGCTGTTCTTCGAGCTGTACCGCCACATCGTCCAGACC
GGCAGTGTACTATGATAAGGGACGTGATCTTGATCCCACCCTCTGTGCTG
GCGCCCTGCTTCACGGTATTATCTCGATTCATGTAAGGTGGGTAGTGGAG
AGGAAGGCAGCAAGGGAGCATATATGCAAGTTATATCCTGTTTTCTTCGT
CGTTTCGCTGTTCATCACTTATTAGCATTTATT

Coding sequence (CDS) from alignment at scaffold_38:211125..213307+

>mRNA_9717 ID=mRNA_9717|Name=jgi.p|Nanoce1779_2|607480|organism=Nannochloropsis oceanica|type=CDS|length=3372bp|location=Sequence derived from alignment at scaffold_38:211125..213307+ (Nannochloropsis oceanica)
ATGGCGCCGTCGCAGTGGCGGAGGGAAAATTTCCGCGGGCCCAGCGCCAA
CACCACCATGCCTCTTCTCCTTCTGCTTCCCTCTCTCTTTCTCCTTGTCT
GCCTGCCCTCCCCCCTGCACGCCTTGGACTTCCAGGACATCCGCGACGGC
TTCTCAGGGGCATCGGATGACATTAGAAAGGGCATGAATGGGCTGCGGTT
GCCGGGCATGTGCGCCTACTACGACCCCATCGAGGATCGTTGCCACGTCA
ACAGCAACAATGGCGTCCGCACTGAGGTGGCTGGCAGGTGTGGCGACAAC
ATGAAAGACATCATCCCCACCTGTCGCGGACACCCTGACGCCTATATGCC
ACAACCCCAAGTGCCTACTACGCCCGCAAAGCCTTTGCCGGTACCACCTA
AGACGCCTGTGGAAGTGAAGCCAGATGGAGAGATCCCGGGCTCTCCAACG
CCGTTGTTGCCGCCGCCTCCGCAGAAACCGACGTCGGAACGTCCTGTCCG
AGCACCCACCGGCAAGCAGGGCACTCAGAACCCTCCTCGCTGGCCTCCCT
TGTCAGGAAAAGACAGCGGAGAGCCCGTGGCGGACGTGGTAGAGGAGGAG
AAGGAGAGAAGGAGGAGAGGCTTGAAAGGATTCGCTCTCTTCGGCGTTCT
CATTGGAACGGCCATCTGTGTGGCGATTCTCTCCGTGTTGGGCGTGGGGT
ATTACGCGTATCGCACCAGGCAGAAGACTATGCGACTGCGAGAGCAAGTC
CTTACAGCTCGTGAGGCTCGGGCGCATGTCACATTCGCCGGCATATCTCC
CTCGTTGCCATCAGTCCCGACGCCTCGCTCCTTAGGATTGTAAATGGCGC
CGTCGCAGTGGCGGAGGGAAAATTTCCGCGGGCCCAGCGCCAACACCACC
ATGCCTCTTCTCCTTCTGCTTCCCTCTCTCTTTCTCCTTGTCTGCCTGCC
CTCCCCCCTGCACGCCTTGGACTTCCAGGACATCCGCGACGGCTTCTCAG
GGGCATCGGATGACATTAGAAAGGGCATGAATGGGCTGCGGTTGCCGGGC
ATGTGCGCCTACTACGACCCCATCGAGGATCGTTGCCACGTCAACAGCAA
CAATGGCGTCCGCACTGAGGTGGCTGGCAGGTGTGGCGACAACATGAAAG
ACATCATCCCCACCTGTCGCGGACACCCTGACGCCTATATGCCACAACCC
CAAGTGCCTACTACGCCCGCAAAGCCTTTGCCGGTACCACCTAAGACGCC
TGTGGAAGTGAAGCCAGATGGAGAGATCCCGGGCTCTCCAACGCCGTTGT
TGCCGCCGCCTCCGCAGAAACCGACGTCGGAACGTCCTGTCCGAGCACCC
ACCGGCAAGCAGGGCACTCAGAACCCTCCTCGCTGGCCTCCCTTGTCAGG
AAAAGACAGCGGAGAGCCCGTGGCGGACGTGGTAGAGGAGGAGAAGGAGA
GAAGGAGGAGAGGCTTGAAAGGATTCGCTCTCTTCGGCGTTCTCATTGGA
ACGGCCATCTGTGTGGCGATTCTCTCCGTGTTGGGCGTGGGGTATTACGC
GTATCGCACCAGGCAGAAGACTATGCGACTGCGAGAGCAAGTCCTTACAG
CTCGTGAGGCTCGGGCGCATGTCACATTCGCCGGCATATCTCCCTCGTTG
CCATCAGTCCCGACGCCTCGCTCCTTAGGATTGTAAATGGCGCCGTCGCA
GTGGCGGAGGGAAAATTTCCGCGGGCCCAGCGCCAACACCACCATGCCTC
TTCTCCTTCTGCTTCCCTCTCTCTTTCTCCTTGTCTGCCTGCCCTCCCCC
CTGCACGCCTTGGACTTCCAGGACATCCGCGACGGCTTCTCAGGGGCATC
GGATGACATTAGAAAGGGCATGAATGGGCTGCGGTTGCCGGGCATGTGCG
CCTACTACGACCCCATCGAGGATCGTTGCCACGTCAACAGCAACAATGGC
GTCCGCACTGAGGTGGCTGGCAGGTGTGGCGACAACATGAAAGACATCAT
CCCCACCTGTCGCGGACACCCTGACGCCTATATGCCACAACCCCAAGTGC
CTACTACGCCCGCAAAGCCTTTGCCGGTACCACCTAAGACGCCTGTGGAA
GTGAAGCCAGATGGAGAGATCCCGGGCTCTCCAACGCCGTTGTTGCCGCC
GCCTCCGCAGAAACCGACGTCGGAACGTCCTGTCCGAGCACCCACCGGCA
AGCAGGGCACTCAGAACCCTCCTCGCTGGCCTCCCTTGTCAGGAAAAGAC
AGCGGAGAGCCCGTGGCGGACGTGGTAGAGGAGGAGAAGGAGAGAAGGAG
GAGAGGCTTGAAAGGATTCGCTCTCTTCGGCGTTCTCATTGGAACGGCCA
TCTGTGTGGCGATTCTCTCCGTGTTGGGCGTGGGGTATTACGCGTATCGC
ACCAGGCAGAAGACTATGCGACTGCGAGAGCAAGTCCTTACAGCTCGTGA
GGCTCGGGCGCATGTCACATTCGCCGGCATATCTCCCTCGTTGCCATCAG
TCCCGACGCCTCGCTCCTTAGGATTGTAAATGGCGCCGTCGCAGTGGCGG
AGGGAAAATTTCCGCGGGCCCAGCGCCAACACCACCATGCCTCTTCTCCT
TCTGCTTCCCTCTCTCTTTCTCCTTGTCTGCCTGCCCTCCCCCCTGCACG
CCTTGGACTTCCAGGACATCCGCGACGGCTTCTCAGGGGCATCGGATGAC
ATTAGAAAGGGCATGAATGGGCTGCGGTTGCCGGGCATGTGCGCCTACTA
CGACCCCATCGAGGATCGTTGCCACGTCAACAGCAACAATGGCGTCCGCA
CTGAGGTGGCTGGCAGGTGTGGCGACAACATGAAAGACATCATCCCCACC
TGTCGCGGACACCCTGACGCCTATATGCCACAACCCCAAGTGCCTACTAC
GCCCGCAAAGCCTTTGCCGGTACCACCTAAGACGCCTGTGGAAGTGAAGC
CAGATGGAGAGATCCCGGGCTCTCCAACGCCGTTGTTGCCGCCGCCTCCG
CAGAAACCGACGTCGGAACGTCCTGTCCGAGCACCCACCGGCAAGCAGGG
CACTCAGAACCCTCCTCGCTGGCCTCCCTTGTCAGGAAAAGACAGCGGAG
AGCCCGTGGCGGACGTGGTAGAGGAGGAGAAGGAGAGAAGGAGGAGAGGC
TTGAAAGGATTCGCTCTCTTCGGCGTTCTCATTGGAACGGCCATCTGTGT
GGCGATTCTCTCCGTGTTGGGCGTGGGGTATTACGCGTATCGCACCAGGC
AGAAGACTATGCGACTGCGAGAGCAAGTCCTTACAGCTCGTGAGGCTCGG
GCGCATGTCACATTCGCCGGCATATCTCCCTCGTTGCCATCAGTCCCGAC
GCCTCGCTCCTTAGGATTGTAA

Synonyms

Publications