jgi.p|Nanoce1779_2|281480, mRNA_9714 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|281480
Unique NamemRNA_9714
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length577
Alignment locationscaffold_38:205745..206321 +

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Properties
Property NameValue
TranscriptId281566
TrackFilteredModels2
ProteinId281480
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_38supercontigscaffold_38:205745..206321 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|281480gene_9714Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|281480mRNA_9714-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9714CDS_9714Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9714 ID=mRNA_9714|Name=jgi.p|Nanoce1779_2|281480|organism=Nannochloropsis oceanica|type=mRNA|length=577bp
CACCATCCCCACTCCCATCACCACCACGGGCCCTCGCCTCCTCTACCAAG
ACCATTTCCACTAACATCTCCAAGCCTTTTCTGTTATTCTCTCATGTTGT
CCTTCTTATTATGCCTCTCATTCTCGGCCTGTTGCTCTTCTGCTTTATGC
AGCGACTGCCACCAACCTCCCCCTTGCACATCCTCGAACCATTCCTCCTC
CTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCCCTTCGTCCTCCGCAT
TCTCACCACGCTCTCCTCTTTGACCTCCAGTCTCACTGCGCCTCCCCGCT
TGAGCAGGGCCGAAAAAAAGCCGTCAAGTACGCCAATGCCAAGCAACGGC
TTCGATACACGCGACAAAAATACCACCGGAAAAAGTCGCAAATTTACAAG
GAGCTCACGGAGGAGGAGCAGACAGATGTGAAGGCAAGAATGATGGCGAG
AAAGAAGGAAAGGAAGGAGAGGTTTACGGCTCTGCTTGCGGTGGACGCGG
GATGGTTGAAGAAGAGGAAGGAAAGCAGGAGGACAAAGAGGGAAGCAAGG
GAAATGGCCAAGAGAGAAGAGGAGGAG
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protein sequence of jgi.p|Nanoce1779_2|281480

>mRNA_9714-protein ID=mRNA_9714-protein|Name=jgi.p|Nanoce1779_2|281480|organism=Nannochloropsis oceanica|type=polypeptide|length=107bp
MPLILGLLLFCFMQRLPPTSPLHILEPFLLLLLLLLLLLLLPFVLRILTT
LSSLTSSLTAPPRLSRAEKKPSSTPMPSNGFDTRDKNTTGKSRKFTRSSR
RRSRQM*
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mRNA from alignment at scaffold_38:205745..206321+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9714 ID=mRNA_9714|Name=jgi.p|Nanoce1779_2|281480|organism=Nannochloropsis oceanica|type=mRNA|length=577bp|location=Sequence derived from alignment at scaffold_38:205745..206321+ (Nannochloropsis oceanica)
CACCATCCCCACTCCCATCACCACCACGGGCCCTCGCCTCCTCTACCAAG
ACCATTTCCACTAACATCTCCAAGCCTTTTCTGTTATTCTCTCATGTTGT
CCTTCTTATTATGCCTCTCATTCTCGGCCTGTTGCTCTTCTGCTTTATGC
AGCGACTGCCACCAACCTCCCCCTTGCACATCCTCGAACCATTCCTCCTC
CTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCCCTTCGTCCTCCGCAT
TCTCACCACGCTCTCCTCTTTGACCTCCAGTCTCACTGCGCCTCCCCGCT
TGAGCAGGGCCGAAAAAAAGCCGTCAAGTACGCCAATGCCAAGCAACGGC
TTCGATACACGCGACAAAAATACCACCGGAAAAAGTCGCAAATTTACAAG
GAGCTCACGGAGGAGGAGCAGACAGATGTGAAGGCAAGAATGATGGCGAG
AAAGAAGGAAAGGAAGGAGAGGTTTACGGCTCTGCTTGCGGTGGACGCGG
GATGGTTGAAGAAGAGGAAGGAAAGCAGGAGGACAAAGAGGGAAGCAAGG
GAAATGGCCAAGAGAGAAGAGGAGGAG
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Coding sequence (CDS) from alignment at scaffold_38:205745..206321+

>mRNA_9714 ID=mRNA_9714|Name=jgi.p|Nanoce1779_2|281480|organism=Nannochloropsis oceanica|type=CDS|length=321bp|location=Sequence derived from alignment at scaffold_38:205745..206321+ (Nannochloropsis oceanica)
ATGCCTCTCATTCTCGGCCTGTTGCTCTTCTGCTTTATGCAGCGACTGCC
ACCAACCTCCCCCTTGCACATCCTCGAACCATTCCTCCTCCTCCTCCTCC
TCCTCCTCCTCCTCCTCCTCCTCCCCTTCGTCCTCCGCATTCTCACCACG
CTCTCCTCTTTGACCTCCAGTCTCACTGCGCCTCCCCGCTTGAGCAGGGC
CGAAAAAAAGCCGTCAAGTACGCCAATGCCAAGCAACGGCTTCGATACAC
GCGACAAAAATACCACCGGAAAAAGTCGCAAATTTACAAGGAGCTCACGG
AGGAGGAGCAGACAGATGTGA
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Synonyms
Publications