jgi.p|Nanoce1779_2|607463, mRNA_9713 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|607463
Unique NamemRNA_9713
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1503
Alignment locationscaffold_38:201923..203649 -

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Properties
Property NameValue
TranscriptId607549
TrackFilteredModels2
ProteinId607463
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_38supercontigscaffold_38:201923..203649 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|607463gene_9713Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|607463mRNA_9713-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9713CDS_9713Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9713 ID=mRNA_9713|Name=jgi.p|Nanoce1779_2|607463|organism=Nannochloropsis oceanica|type=mRNA|length=1503bp
ACGTGTTTGTTGTCAACAAGACGATTATCAAGGCCTGTGTCTGTGTATAA
TACAGCTGGAAGCAAGACGGCACGTAAGGTCAACAAGCGATATCGCCGCC
GTCGCAGTAGTTTGTGTGGTCTGAGGAGCCGACTACTTTGTGTCTCGTAG
CCCCGGTCTTGTGTGCGGCATCACGCTCAATATGACTAGCAGCGCCATGC
AGAGGTACAGTGTTTTGTTATGTGGGTCTATCTCGATTGTGCCGGTGTCG
TGTGGGTGGTGGTGGGGATTGGGGGGCCTCCGCTTCCATGCGTCATCATC
AAGCAAGCCTCCTTTTCTCGCCTTTGGTCTTGCCCTTTGGCAGCACCAGT
GGGCATTCGCGTAGCCACTACTGTGTGGTCTAGCATACGGACGATGACAG
TATCGTTGTAACTCTGTGGCGGATTTGGTTTCAACCATCGTTGTGCGCTT
GGAAACCGACGTCAAACCCTCATTCGCCATCCCTCCCCACACATGACATG
CACTGCTTGCTTGCTGCCTCCACCGACCACGACCACCGGAGGGAATCTCG
AGAGCATGCTTTGGAGCTCTGGCATAAAGGGTGCAGCCATGGTGTGGAGA
GGGGGCGCAGATTTCTGGTCCGGGAAGGGACGCGTACTGCGGGGGGCGTT
TTCCTCGACAGGCCACAGGGGGACGGACACGGGCTATGGAGGGAGCTCTC
GGACACAGTCGATCGACAAATACGAAGTAGTCAAGGTGGCGGTAACCGTC
ATCGGCACAATTGCGGCGGTTTCGAGCTTTATCTCATACGGCGTCCGTAT
CGTCGACGAGAGAGAGAATAGGGCTGAGATCGCGCGTGTGCAGAACGAGG
CGGCTACGGAGATCAGGCGGATCGAGGGGGAGTGGAAGTCGAAAGAGCGC
CAGTGGAAGTCTAAAGAGGGCCAGTGGAAGGCGGAAGTCGCGCGCATCGA
GGGGGAGTGGAAAATGTCGGAGCGATTGTGGAAGGCGGAGGTGGAGCGAT
ATAAGCGCGACCTCCAATTGGCCCATACTCGTGACTATGAGCCGTATCAG
GCGGCGATATCGCAGAAAGGGGAAAGAACAACGGGGGCAGGAAGCGGAGG
ACTGGAGAAGGAAGAGAAGAAGAACTAGCTTTTGGTATCCTGCGTAGATT
AACAAGAAAGTGTACAGTGGCCAGAGTAAACATAGGCAAAAGACATAGGT
AAAGACATGTACAGTGGCCGGGGCGAATAAGGATAGATGGTTGTGAGGGG
GTTGGTACTCCTACACCACCAATGCAATAAGGAGGGCTCCCCAAAATGTT
CAAGCAGCGAGTTCTTCTTCCTCTTATCATTATTCTTTACTATCATCATG
ATCATCATCATCCTTCTTCTTGGTCGTTTTGTTCTTCTTCTTCTTTTTCT
TCTTTTTCTTCTTGTTCTTGTTCTTGCTCTTGTTCTTCTTCTTCTTCTTC
TTCTTCTTCTTCTTTCTTCTTCTTCTTCTTCTTCTTCTTGTTCTTCTTCT
TCT
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protein sequence of jgi.p|Nanoce1779_2|607463

>mRNA_9713-protein ID=mRNA_9713-protein|Name=jgi.p|Nanoce1779_2|607463|organism=Nannochloropsis oceanica|type=polypeptide|length=212bp
MTCTACLLPPPTTTTGGNLESMLWSSGIKGAAMVWRGGADFWSGKGRVLR
GAFSSTGHRGTDTGYGGSSRTQSIDKYEVVKVAVTVIGTIAAVSSFISYG
VRIVDERENRAEIARVQNEAATEIRRIEGEWKSKERQWKSKEGQWKAEVA
RIEGEWKMSERLWKAEVERYKRDLQLAHTRDYEPYQAAISQKGERTTGAG
SGGLEKEEKKN*
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mRNA from alignment at scaffold_38:201923..203649-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9713 ID=mRNA_9713|Name=jgi.p|Nanoce1779_2|607463|organism=Nannochloropsis oceanica|type=mRNA|length=1727bp|location=Sequence derived from alignment at scaffold_38:201923..203649- (Nannochloropsis oceanica)
ACGTGTTTGTTGTCAACAAGACGATTATCAAGGCCTGTGTCTGTGTATAA
TACAGCTGGAAGCAAGACGGCACGTAAGGTCAACAAGCGATATCGCCGCC
GTCGCAGTAGTTTGTGTGGTCTGAGGAGCCGACTACTTTGTGTCTCGTAG
CCCCGGTCTTGTGTGCGGCATCACGCTCAATATGACTAGCAGCGCCATGC
AGAGGTACAGTGTTTTGTTATGTGGGTCTATCTCGATTGTGCCGGTGTCG
TGTGGGTGGTGGTGGGGATTGGGGGGCCTCCGCTTCCATGCGTCATCATC
AAGCAAGCCTCCTTTTCTCGCCTTTGGTCTTGCCCTTTGGCAGCACCAGT
GGGCATTCGCGTAGCCACTACTGTGTGGTCTAGCATACGGACGATGACAG
TATCGTTGTAACTCTGTGGCGGATTTGGTTTCAACCATCGTTGTGCGCTT
GGAAACCGACGTCAAACCCTCATTCGCCATCCCTCCCCACACATGACATG
CACTGCTTGCTTGCTGCCTCCACCGACCACGACCACCGGAGGGAATCTCG
AGAGCATGCTTTGGAGCTCTGGCATAAAGGGTGCAGCCATGGTGTGGAGA
GGGGGCGCAGATTTCTGGTCCGGTAAGGTGGATTGTGTAATGGATATTGG
AGGGAGGGCAAGATTTGGTCTTTTGGGAGGGGGGGGGAGGGGAAGGGAGG
AGAGGGTGTTCGGTACACGCGACCGCACACTGCGCGAGGCATGTTGATCG
ACTCCCGTCTGATATAGTGTCTATTCCGTCTGAGATACGATGTGTGTGAT
GGGGGTAAGTTTTCTACGCACAAGCCCAAATTCACGCACACAACAGGGAA
GGGACGCGTACTGCGGGGGGCGTTTTCCTCGACAGGCCACAGGGGGACGG
ACACGGGCTATGGAGGGAGCTCTCGGACACAGTCGATCGACAAATACGAA
GTAGTCAAGGTGGCGGTAACCGTCATCGGCACAATTGCGGCGGTTTCGAG
CTTTATCTCATACGGCGTCCGTATCGTCGACGAGAGAGAGAATAGGGCTG
AGATCGCGCGTGTGCAGAACGAGGCGGCTACGGAGATCAGGCGGATCGAG
GGGGAGTGGAAGTCGAAAGAGCGCCAGTGGAAGTCTAAAGAGGGCCAGTG
GAAGGCGGAAGTCGCGCGCATCGAGGGGGAGTGGAAAATGTCGGAGCGAT
TGTGGAAGGCGGAGGTGGAGCGATATAAGCGCGACCTCCAATTGGCCCAT
ACTCGTGACTATGAGCCGTATCAGGCGGCGATATCGCAGAAAGGGGAAAG
AACAACGGGGGCAGGAAGCGGAGGACTGGAGAAGGAAGAGAAGAAGAACT
AGCTTTTGGTATCCTGCGTAGATTAACAAGAAAGTGTACAGTGGCCAGAG
TAAACATAGGCAAAAGACATAGGTAAAGACATGTACAGTGGCCGGGGCGA
ATAAGGATAGATGGTTGTGAGGGGGTTGGTACTCCTACACCACCAATGCA
ATAAGGAGGGCTCCCCAAAATGTTCAAGCAGCGAGTTCTTCTTCCTCTTA
TCATTATTCTTTACTATCATCATGATCATCATCATCCTTCTTCTTGGTCG
TTTTGTTCTTCTTCTTCTTTTTCTTCTTTTTCTTCTTGTTCTTGTTCTTG
CTCTTGTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTTCTTCTTCTTCT
TCTTCTTCTTCTTGTTCTTCTTCTTCT
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Coding sequence (CDS) from alignment at scaffold_38:201923..203649-

>mRNA_9713 ID=mRNA_9713|Name=jgi.p|Nanoce1779_2|607463|organism=Nannochloropsis oceanica|type=CDS|length=1272bp|location=Sequence derived from alignment at scaffold_38:201923..203649- (Nannochloropsis oceanica)
GGAAGGGACGCGTACTGCGGGGGGCGTTTTCCTCGACAGGCCACAGGGGG
ACGGACACGGGCTATGGAGGGAGCTCTCGGACACAGTCGATCGACAAATA
CGAAGTAGTCAAGGTGGCGGTAACCGTCATCGGCACAATTGCGGCGGTTT
CGAGCTTTATCTCATACGGCGTCCGTATCGTCGACGAGAGAGAGAATAGG
GCTGAGATCGCGCGTGTGCAGAACGAGGCGGCTACGGAGATCAGGCGGAT
CGAGGGGGAGTGGAAGTCGAAAGAGCGCCAGTGGAAGTCTAAAGAGGGCC
AGTGGAAGGCGGAAGTCGCGCGCATCGAGGGGGAGTGGAAAATGTCGGAG
CGATTGTGGAAGGCGGAGGTGGAGCGATATAAGCGCGACCTCCAATTGGC
CCATACTCGTGACTATGAGCCGTATCAGGCGGCGATATCGCAGAAAGGGG
AAAGAACAACGGGGGCAGGAAGCGGAGGACTGGAGAAGGAAGAGAAGAAG
AACTAGATGACATGCACTGCTTGCTTGCTGCCTCCACCGACCACGACCAC
CGGAGGGAATCTCGAGAGCATGCTTTGGAGCTCTGGCATAAAGGGTGCAG
CCATGGTGTGGAGAGGGGGCGCAGATTTCTGGTCCGGGAAGGGACGCGTA
CTGCGGGGGGCGTTTTCCTCGACAGGCCACAGGGGGACGGACACGGGCTA
TGGAGGGAGCTCTCGGACACAGTCGATCGACAAATACGAAGTAGTCAAGG
TGGCGGTAACCGTCATCGGCACAATTGCGGCGGTTTCGAGCTTTATCTCA
TACGGCGTCCGTATCGTCGACGAGAGAGAGAATAGGGCTGAGATCGCGCG
TGTGCAGAACGAGGCGGCTACGGAGATCAGGCGGATCGAGGGGGAGTGGA
AGTCGAAAGAGCGCCAGTGGAAGTCTAAAGAGGGCCAGTGGAAGGCGGAA
GTCGCGCGCATCGAGGGGGAGTGGAAAATGTCGGAGCGATTGTGGAAGGC
GGAGGTGGAGCGATATAAGCGCGACCTCCAATTGGCCCATACTCGTGACT
ATGAGCCGTATCAGGCGGCGATATCGCAGAAAGGGGAAAGAACAACGGGG
GCAGGAAGCGGAGGACTGGAGAAGGAAGAGAAGAAGAACTAGATGACATG
CACTGCTTGCTTGCTGCCTCCACCGACCACGACCACCGGAGGGAATCTCG
AGAGCATGCTTTGGAGCTCTGGCATAAAGGGTGCAGCCATGGTGTGGAGA
GGGGGCGCAGATTTCTGGTCCG
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Synonyms
Publications