jgi.p|Nanoce1779_2|607449, mRNA_9711 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|607449
Unique NamemRNA_9711
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length471
Alignment locationscaffold_38:197383..198245 -

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Properties
Property NameValue
TranscriptId607535
TrackFilteredModels2
ProteinId607449
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_38supercontigscaffold_38:197383..198245 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|607449gene_9711Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|607449mRNA_9711-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9711CDS_9711Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9711 ID=mRNA_9711|Name=jgi.p|Nanoce1779_2|607449|organism=Nannochloropsis oceanica|type=mRNA|length=471bp
AGGCACCGTTTCCAAGCTATTCAAGCCTGAAGCGCCAAGTCAACCTCATT
GCCGACACTCTGCACCTTTTAGCCTCCCAAGCCACCACCACCCCAACGAA
GTCACCACCCAGTCAGTCAAGCAAATAAGATGAACCCCATTCAGAACATT
CCACCGCACCAGCGCCAAGAATTTATGCGCACCTTGGAGGAGCTCCAGGT
CAAGGACTCGTTGCTCATGTACAATCGGCTGGTAGAGCGATGCTTCAAGG
AATGCGTCACACGTTTTCGTTCCAAGAAGATGGACGACGGAGAGCTCTCG
TGCGTTTCTCGTTGCGCTGAGAAATATCTCAAGTTGACTTCACGGGCAGG
CTTTCGCTTTGCAGAATTTCAATCGCAACAATCAGGGGCTGAGGGGGGGG
GCATGCCGCCACCTTCGTAGGAGGAGGGAGAGGAGGGCACAAGAGAAAAG
AAGAAGAAGAAGAAGAAGAAG
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protein sequence of jgi.p|Nanoce1779_2|607449

>mRNA_9711-protein ID=mRNA_9711-protein|Name=jgi.p|Nanoce1779_2|607449|organism=Nannochloropsis oceanica|type=polypeptide|length=97bp
MNPIQNIPPHQRQEFMRTLEELQVKDSLLMYNRLVERCFKECVTRFRSKK
MDDGELSCVSRCAEKYLKLTSRAGFRFAEFQSQQSGAEGGGMPPPS*
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mRNA from alignment at scaffold_38:197383..198245-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9711 ID=mRNA_9711|Name=jgi.p|Nanoce1779_2|607449|organism=Nannochloropsis oceanica|type=mRNA|length=863bp|location=Sequence derived from alignment at scaffold_38:197383..198245- (Nannochloropsis oceanica)
AGGCACCGTTTCCAAGCTATTCAAGCCTGAAGCGCCAAGTCAACCTCATT
GCCGACACTCTGCACCTTTTAGCCTCCCAAGCCACCACCACCCCAACGAA
GTCACCACCCAGTCAGTCAAGCAAATAAGATGAACCCCATTCAGAACATT
CCACCGCACCAGCGCCAAGAATTTATGCGCACCTTGGAGGAGCTCCAGGT
CAAGGACTCGTTGCTGTGAGTGTGCGCTCGATAGGGAAGAGGAGGGGAAA
AGGGAAGGAGAGCGGTGGTGTGGAGGGGAGGTCGGAGAGACGGGATGACA
TGCATACTTTCTCCGCATAAACATACACTTACACGAACACACGACAGCAT
GTACAATCGGCTGGTAGAGCGATGCTTCAAGGAATGCGTCACAGTACGTT
TCTTAATTTTCTGGACATTGGTTTTGGCGCGTGGATATTGGGAAATAGGC
ATTGATTGCGTTTTATGTGGGCGAGAGGCGGATGGAGTCAAGCAGCTTCG
GCTCTCTCTCTTACACCTGCACACATATATATGATAGACAGCAAACTTTC
GTCCTCTCGTAGATCTCGTTCCCTTGTTTTCTTCTTCCCCCTGTTCTCTC
ATTGAGCCCGCCCTCCCCGCCCCACATCCACCTTCACCTTCATCACATCA
CAGCGTTTTCGTTCCAAGAAGATGGACGACGGAGAGCTCTCGTGCGTTTC
TCGTTGCGCTGAGAAATATCTCAAGTTGACTTCACGGGCAGGCTTTCGCT
TTGCAGAATTTCAATCGCAACAATCAGGGGCTGAGGGGGGGGGCATGCCG
CCACCTTCGTAGGAGGAGGGAGAGGAGGGCACAAGAGAAAAGAAGAAGAA
GAAGAAGAAGAAG
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Coding sequence (CDS) from alignment at scaffold_38:197383..198245-

>mRNA_9711 ID=mRNA_9711|Name=jgi.p|Nanoce1779_2|607449|organism=Nannochloropsis oceanica|type=CDS|length=873bp|location=Sequence derived from alignment at scaffold_38:197383..198245- (Nannochloropsis oceanica)
CGTTTTCGTTCCAAGAAGATGGACGACGGAGAGCTCTCGTGCGTTTCTCG
TTGCGCTGAGAAATATCTCAAGTTGACTTCACGGGCAGGCTTTCGCTTTG
CAGAATTTCAATCGCAACAATCAGGGGCTGAGGGGGGGGGCATGCCGCCA
CCTTCGTAGCATGTACAATCGGCTGGTAGAGCGATGCTTCAAGGAATGCG
TCACAATGAACCCCATTCAGAACATTCCACCGCACCAGCGCCAAGAATTT
ATGCGCACCTTGGAGGAGCTCCAGGTCAAGGACTCGTTGCTCGTTTTCGT
TCCAAGAAGATGGACGACGGAGAGCTCTCGTGCGTTTCTCGTTGCGCTGA
GAAATATCTCAAGTTGACTTCACGGGCAGGCTTTCGCTTTGCAGAATTTC
AATCGCAACAATCAGGGGCTGAGGGGGGGGGCATGCCGCCACCTTCGTAG
CATGTACAATCGGCTGGTAGAGCGATGCTTCAAGGAATGCGTCACAATGA
ACCCCATTCAGAACATTCCACCGCACCAGCGCCAAGAATTTATGCGCACC
TTGGAGGAGCTCCAGGTCAAGGACTCGTTGCTCGTTTTCGTTCCAAGAAG
ATGGACGACGGAGAGCTCTCGTGCGTTTCTCGTTGCGCTGAGAAATATCT
CAAGTTGACTTCACGGGCAGGCTTTCGCTTTGCAGAATTTCAATCGCAAC
AATCAGGGGCTGAGGGGGGGGGCATGCCGCCACCTTCGTAGCATGTACAA
TCGGCTGGTAGAGCGATGCTTCAAGGAATGCGTCACAATGAACCCCATTC
AGAACATTCCACCGCACCAGCGCCAAGAATTTATGCGCACCTTGGAGGAG
CTCCAGGTCAAGGACTCGTTGCT
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Synonyms
Publications