jgi.p|Nanoce1779_2|607444, mRNA_9710 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|607444
Unique NamemRNA_9710
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length648
Alignment locationscaffold_38:195022..195669 +

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Properties
Property NameValue
TranscriptId607530
TrackFilteredModels2
ProteinId607444
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_38supercontigscaffold_38:195022..195669 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|607444gene_9710Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|607444mRNA_9710-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9710CDS_9710Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9710 ID=mRNA_9710|Name=jgi.p|Nanoce1779_2|607444|organism=Nannochloropsis oceanica|type=mRNA|length=648bp
GACGTGAAGAGGGAATAATAGGGAATAAAAGAAAGTGAGACATGGGCGGA
CGCAGAGTGGTGATGAGGGGGGAGGAAAAATTCAGGGGCTCTAACTCACT
GCATCCTCAATAATTATTTTTGCTTTTTTTTTGTCAAGGGAGTTTTCTTC
AAATTTCTTGGTGTTTCGCGGGGGGTGGGTGGGTAGTGATTGGTATGATG
CTTGTCGATGACCGTGACGGTGATGAGGGTGCAGTTGTTGTTATTTTTGC
ATCTTTTTTCGAGAGGATGCATCCGATCCCCCTCTCTCTCTCTCCCTTGT
TCCATCCCTGACTTCTCTGTCTCCCTCCTGCACCTATCTTCCGCTTCGCT
TGGCAGGGAAAATAAAATCGAAGGGGATTGCTCGCTGCTTCTCTCTTCCA
GAGCCATCCGTATGAAACCTTTTATTTTCCCTCCTACTTCTCCTAGTCCG
CCTCCTCCTCCTCCCTTTCTCGTCATCTACACCCCTCCCTCCCTCCCTCC
CGTCCACCCCTCAATCGCAATCCAATGCCAACTTTCTTCATCCCTCCCTC
CGTCCCTCCCTCCCTCCCTCCCTCCGTCCATTCCTCCTCCTCAAGCCTTC
ACCACCTTCTTCAATTCTGGCCATTCCCGGCTGGCATAGGTGAATCCC
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protein sequence of jgi.p|Nanoce1779_2|607444

>mRNA_9710-protein ID=mRNA_9710-protein|Name=jgi.p|Nanoce1779_2|607444|organism=Nannochloropsis oceanica|type=polypeptide|length=144bp
MTVTVMRVQLLLFLHLFSRGCIRSPSLSLPCSIPDFSVSLLHLSSASLGR
ENKIEGDCSLLLSSRAIRMKPFIFPPTSPSPPPPPPFLVIYTPPSLPPVH
PSIAIQCQLSSSLPPSLPPSLPPSIPPPQAFTTFFNSGHSRLA*
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mRNA from alignment at scaffold_38:195022..195669+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9710 ID=mRNA_9710|Name=jgi.p|Nanoce1779_2|607444|organism=Nannochloropsis oceanica|type=mRNA|length=648bp|location=Sequence derived from alignment at scaffold_38:195022..195669+ (Nannochloropsis oceanica)
GACGTGAAGAGGGAATAATAGGGAATAAAAGAAAGTGAGACATGGGCGGA
CGCAGAGTGGTGATGAGGGGGGAGGAAAAATTCAGGGGCTCTAACTCACT
GCATCCTCAATAATTATTTTTGCTTTTTTTTTGTCAAGGGAGTTTTCTTC
AAATTTCTTGGTGTTTCGCGGGGGGTGGGTGGGTAGTGATTGGTATGATG
CTTGTCGATGACCGTGACGGTGATGAGGGTGCAGTTGTTGTTATTTTTGC
ATCTTTTTTCGAGAGGATGCATCCGATCCCCCTCTCTCTCTCTCCCTTGT
TCCATCCCTGACTTCTCTGTCTCCCTCCTGCACCTATCTTCCGCTTCGCT
TGGCAGGGAAAATAAAATCGAAGGGGATTGCTCGCTGCTTCTCTCTTCCA
GAGCCATCCGTATGAAACCTTTTATTTTCCCTCCTACTTCTCCTAGTCCG
CCTCCTCCTCCTCCCTTTCTCGTCATCTACACCCCTCCCTCCCTCCCTCC
CGTCCACCCCTCAATCGCAATCCAATGCCAACTTTCTTCATCCCTCCCTC
CGTCCCTCCCTCCCTCCCTCCCTCCGTCCATTCCTCCTCCTCAAGCCTTC
ACCACCTTCTTCAATTCTGGCCATTCCCGGCTGGCATAGGTGAATCCC
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Coding sequence (CDS) from alignment at scaffold_38:195022..195669+

>mRNA_9710 ID=mRNA_9710|Name=jgi.p|Nanoce1779_2|607444|organism=Nannochloropsis oceanica|type=CDS|length=432bp|location=Sequence derived from alignment at scaffold_38:195022..195669+ (Nannochloropsis oceanica)
ATGACCGTGACGGTGATGAGGGTGCAGTTGTTGTTATTTTTGCATCTTTT
TTCGAGAGGATGCATCCGATCCCCCTCTCTCTCTCTCCCTTGTTCCATCC
CTGACTTCTCTGTCTCCCTCCTGCACCTATCTTCCGCTTCGCTTGGCAGG
GAAAATAAAATCGAAGGGGATTGCTCGCTGCTTCTCTCTTCCAGAGCCAT
CCGTATGAAACCTTTTATTTTCCCTCCTACTTCTCCTAGTCCGCCTCCTC
CTCCTCCCTTTCTCGTCATCTACACCCCTCCCTCCCTCCCTCCCGTCCAC
CCCTCAATCGCAATCCAATGCCAACTTTCTTCATCCCTCCCTCCGTCCCT
CCCTCCCTCCCTCCCTCCGTCCATTCCTCCTCCTCAAGCCTTCACCACCT
TCTTCAATTCTGGCCATTCCCGGCTGGCATAG
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Synonyms
Publications