jgi.p|Nanoce1779_2|636240, mRNA_971 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|636240
Unique NamemRNA_971
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length399
Alignment locationscaffold_2:893476..894239 +

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Properties
Property NameValue
TranscriptId636326
TrackFilteredModels2
ProteinId636240
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:893476..894239 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|636240gene_971Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|636240mRNA_971-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_971CDS_971Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_971 ID=mRNA_971|Name=jgi.p|Nanoce1779_2|636240|organism=Nannochloropsis oceanica|type=mRNA|length=399bp
ATGCAAGAAGGAAAAGTCTCCGCGCATGCCGGCGTCCACATATTATTGCC
CACATATCAGCTGCGTCCGCGCGAGGATGAAAAGTTCTCCCCGGCTGTAG
CGCAACGATTAGCGGAGCAGGTGTTAGTAGATGAGTTGAAGGGGAAAGCT
TATGACGATGAAAGTGTGACGAATTGGGCCATCGTTGTCGCAGATGCGGT
CAAGAAAGGGGTGAAAGCACAAAATATACCAAGGTTCAAAGTTGTGGTGC
AAGTCGTGTTGGGGGAGGTGCGAGAGCAGGGAGTGTGGGTAGCTTCCCGG
TGCTTGTGGGATTCGATCACCGACAATCACACCTCCGCAACATTTATTAA
TGAGAGCTTGTGGTGTACTGTCTTGATTTTTGCTGTCTACACGGACTGA
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protein sequence of jgi.p|Nanoce1779_2|636240

>mRNA_971-protein ID=mRNA_971-protein|Name=jgi.p|Nanoce1779_2|636240|organism=Nannochloropsis oceanica|type=polypeptide|length=133bp
MQEGKVSAHAGVHILLPTYQLRPREDEKFSPAVAQRLAEQVLVDELKGKA
YDDESVTNWAIVVADAVKKGVKAQNIPRFKVVVQVVLGEVREQGVWVASR
CLWDSITDNHTSATFINESLWCTVLIFAVYTD*
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mRNA from alignment at scaffold_2:893476..894239+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_971 ID=mRNA_971|Name=jgi.p|Nanoce1779_2|636240|organism=Nannochloropsis oceanica|type=mRNA|length=764bp|location=Sequence derived from alignment at scaffold_2:893476..894239+ (Nannochloropsis oceanica)
ATGCAAGAAGGAAAAGTCTCCGCGCATGCCGGCGTCCACATATTATTGCC
CACATATCAGCTGCGTCCGCGCGAGGATGAAAAGTTCTCCCCGGCTGTAG
CGCAACGATTAGCGGAGCAGGTGTTAGTAGATGAGTTGAAGGGGAAAGCT
TATGACGATGAAAGTGTGACGAATTGGGCCATCGTTGTCGCAGATGCGGT
CAAGAAAGGGGTGAAAGGTGGGCTTGATCGAAGGGGAGGGAGGAGAGGAT
CCAGGATACGGTGGGCGGATAGGAAGCTTAATGTCTGTCTAATTAGTAGC
TAGGCAGAAAGTATACATATCCAGTAAAAAAATCTTGTATTCACATATAT
ATACTTCATATTCCATCAAAGCACAAAATATACCAAGGTTCAAAGTTGTG
GTGCAAGTCGTGTTGGGGGAGGTGCGAGAGCAGGGAGTGTGGGTAGCTTC
CCGGTGCTTGTGGGATTCGATCACCGACAATCACACCTCCGCAACATTTA
TTAATGTACGTTTTAAAAGAGCGACGCTTTTGGTCGCGACAAAGAGCTAA
TAAATATGCCCTAAATATTACTACTTCGCTCACCCATATCCTTGCTACCT
CGCTCACCTATAACCTTATCCTTATATCCTTATCCTCATATCGTTATCCT
TAATCCTTATTCACTATCTATCTATCCTTATCCTTACATTCTAAACTTAT
TTTCCGCCACCCACAGGAGAGCTTGTGGTGTACTGTCTTGATTTTTGCTG
TCTACACGGACTGA
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Coding sequence (CDS) from alignment at scaffold_2:893476..894239+

>mRNA_971 ID=mRNA_971|Name=jgi.p|Nanoce1779_2|636240|organism=Nannochloropsis oceanica|type=CDS|length=1197bp|location=Sequence derived from alignment at scaffold_2:893476..894239+ (Nannochloropsis oceanica)
ATGCAAGAAGGAAAAGTCTCCGCGCATGCCGGCGTCCACATATTATTGCC
CACATATCAGCTGCGTCCGCGCGAGGATGAAAAGTTCTCCCCGGCTGTAG
CGCAACGATTAGCGGAGCAGGTGTTAGTAGATGAGTTGAAGGGGAAAGCT
TATGACGATGAAAGTGTGACGAATTGGGCCATCGTTGTCGCAGATGCGGT
CAAGAAAGGGGTGAAAGCACAAAATATACCAAGGTTCAAAGTTGTGGTGC
AAGTCGTGTTGGGGGAGGTGCGAGAGCAGGGAGTGTGGGTAGCTTCCCGG
TGCTTGTGGGATTCGATCACCGACAATCACACCTCCGCAACATTTATTAA
TGAGAGCTTGTGGTGTACTGTCTTGATTTTTGCTGTCTACACGGACTGAA
TGCAAGAAGGAAAAGTCTCCGCGCATGCCGGCGTCCACATATTATTGCCC
ACATATCAGCTGCGTCCGCGCGAGGATGAAAAGTTCTCCCCGGCTGTAGC
GCAACGATTAGCGGAGCAGGTGTTAGTAGATGAGTTGAAGGGGAAAGCTT
ATGACGATGAAAGTGTGACGAATTGGGCCATCGTTGTCGCAGATGCGGTC
AAGAAAGGGGTGAAAGCACAAAATATACCAAGGTTCAAAGTTGTGGTGCA
AGTCGTGTTGGGGGAGGTGCGAGAGCAGGGAGTGTGGGTAGCTTCCCGGT
GCTTGTGGGATTCGATCACCGACAATCACACCTCCGCAACATTTATTAAT
GAGAGCTTGTGGTGTACTGTCTTGATTTTTGCTGTCTACACGGACTGAAT
GCAAGAAGGAAAAGTCTCCGCGCATGCCGGCGTCCACATATTATTGCCCA
CATATCAGCTGCGTCCGCGCGAGGATGAAAAGTTCTCCCCGGCTGTAGCG
CAACGATTAGCGGAGCAGGTGTTAGTAGATGAGTTGAAGGGGAAAGCTTA
TGACGATGAAAGTGTGACGAATTGGGCCATCGTTGTCGCAGATGCGGTCA
AGAAAGGGGTGAAAGCACAAAATATACCAAGGTTCAAAGTTGTGGTGCAA
GTCGTGTTGGGGGAGGTGCGAGAGCAGGGAGTGTGGGTAGCTTCCCGGTG
CTTGTGGGATTCGATCACCGACAATCACACCTCCGCAACATTTATTAATG
AGAGCTTGTGGTGTACTGTCTTGATTTTTGCTGTCTACACGGACTGA
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Synonyms
Publications